Wall clock time and date at job start Mon Mar 30 2020 01:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50706 * 119.99552 * 2 1 4 4 C 1.53002 * 109.46925 * 125.00457 * 3 2 1 5 5 C 1.53008 * 109.46800 * 299.99957 * 4 3 2 6 6 C 1.53005 * 109.47274 * 59.99521 * 4 3 2 7 7 C 1.50696 * 109.47300 * 180.02562 * 4 3 2 8 8 O 1.21279 * 119.99697 * 359.97438 * 7 4 3 9 9 N 1.34777 * 120.00141 * 179.97438 * 7 4 3 10 10 C 1.46496 * 119.99875 * 179.97438 * 9 7 4 11 11 H 1.09001 * 112.85351 * 334.67343 * 10 9 7 12 12 C 1.53787 * 113.61045 * 105.86724 * 10 9 7 13 13 C 1.54050 * 86.98640 * 89.16359 * 12 10 9 14 14 H 1.08992 * 113.70067 * 139.98733 * 13 12 10 15 15 N 1.46501 * 113.61088 * 270.88404 * 13 12 10 16 16 C 1.36939 * 120.00215 * 252.48920 * 15 13 12 17 17 H 1.07994 * 119.99384 * 0.02562 * 16 15 13 18 18 C 1.38813 * 120.00140 * 179.97438 * 16 15 13 19 19 N 1.31615 * 119.99784 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99730 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47244 * 90.00185 * 20 18 16 22 22 H 1.48504 * 109.46808 * 210.00138 * 20 18 16 23 23 H 1.48505 * 109.47274 * 329.99808 * 20 18 16 24 24 C 1.53785 * 87.07917 * 25.42932 * 13 12 10 25 25 H 1.08001 * 120.00035 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.00460 * 359.97438 * 1 2 3 27 27 H 1.07994 * 120.00244 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47318 * 244.99691 * 3 2 1 29 29 H 1.09000 * 109.47161 * 5.00322 * 3 2 1 30 30 H 1.09002 * 109.47288 * 60.00162 * 5 4 3 31 31 H 1.09001 * 109.46630 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47188 * 300.00076 * 5 4 3 33 33 H 1.08996 * 109.46524 * 60.00319 * 6 4 3 34 34 H 1.09001 * 109.46962 * 180.02562 * 6 4 3 35 35 H 1.08992 * 109.47199 * 300.00708 * 6 4 3 36 36 H 0.96999 * 120.00043 * 0.02562 * 9 7 4 37 37 H 1.09002 * 113.61105 * 203.65930 * 12 10 9 38 38 H 1.08994 * 113.61807 * 334.56363 * 12 10 9 39 39 H 0.97006 * 119.99809 * 72.48950 * 15 13 12 40 40 H 0.97006 * 119.99670 * 179.97438 * 19 18 16 41 41 H 1.08997 * 113.61896 * 220.02700 * 24 13 12 42 42 H 1.08998 * 113.61544 * 89.11978 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 6 2.2520 1.1962 2.4890 6 6 4.0245 0.1730 1.0558 7 6 3.7880 2.6385 1.1820 8 8 3.5694 3.4649 0.3217 9 7 4.7043 2.8876 2.1385 10 6 5.4366 4.1564 2.1385 11 1 5.5025 4.6072 1.1483 12 6 4.9739 5.1346 3.2312 13 6 6.0160 4.4718 4.1520 14 1 6.5500 5.1773 4.7884 15 7 5.4966 3.3189 4.8917 16 6 5.2601 3.4184 6.2368 17 1 5.4562 4.3469 6.7522 18 6 4.7674 2.3261 6.9376 19 7 4.5281 1.1947 6.3092 20 14 4.4442 2.4621 8.7723 21 1 3.0497 2.9205 8.9967 22 1 4.6373 1.1343 9.4087 23 1 5.3888 3.4396 9.3703 24 6 6.7845 4.0896 2.8759 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5401 0.9353 0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 2.6212 1.4028 -0.9313 29 1 1.3584 2.1317 0.0896 30 1 1.7071 0.2522 2.4890 31 1 2.9443 1.2157 3.3307 32 1 1.5470 2.0227 2.5786 33 1 4.5822 0.2706 0.1245 34 1 4.7164 0.1927 1.8979 35 1 3.4796 -0.7709 1.0557 36 1 4.8794 2.2265 2.8264 37 1 5.1928 6.1781 3.0042 38 1 3.9438 4.9770 3.5507 39 1 5.3202 2.4850 4.4285 40 1 4.1841 0.4313 6.7990 41 1 7.2151 3.0889 2.9087 42 1 7.4974 4.8478 2.5519 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661658708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:22 Heat of formation + Delta-G solvation = 4.147205 kcal Electronic energy + Delta-G solvation = -21210.082796 eV Core-core repulsion = 18191.277614 eV Total energy + Delta-G solvation = -3018.805181 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.18374 -38.35803 -36.22399 -33.68023 -33.11979 -31.91306 -29.88104 -27.13076 -26.51718 -25.11334 -24.70034 -23.56014 -21.77606 -19.91273 -19.07415 -18.50653 -17.32267 -16.35009 -15.82246 -15.23223 -14.85900 -14.60330 -14.38902 -14.15254 -13.58249 -13.34605 -13.23446 -13.00669 -12.61824 -12.14594 -12.04801 -11.99178 -11.77231 -11.49822 -11.40179 -10.93554 -10.89675 -10.89019 -10.82319 -10.67894 -10.24010 -10.15923 -9.87231 -9.59066 -9.32035 -9.18739 -8.95233 -8.48789 -7.08877 -5.89377 -3.17647 2.30784 3.01506 3.38012 3.43959 3.44726 3.56646 4.50110 4.79528 4.87961 5.04816 5.08011 5.21575 5.25702 5.28647 5.41999 5.43328 5.53314 5.74426 5.83988 5.86056 5.91085 5.93568 5.96429 6.06573 6.14156 6.17723 6.18829 6.28392 6.32344 6.39597 6.58715 6.62157 6.66237 6.71820 6.82149 6.85143 7.16390 7.63723 7.97876 8.30325 8.63942 9.40843 9.95131 10.28846 11.33357 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.016800 B = 0.006157 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.225920 B = 4546.476557 C = 5741.932153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.144 4.144 3 C -0.069 4.069 4 C -0.075 4.075 5 C -0.142 4.142 6 C -0.142 4.142 7 C 0.526 3.474 8 O -0.556 6.556 9 N -0.698 5.698 10 C 0.123 3.877 11 H 0.089 0.911 12 C -0.187 4.187 13 C 0.164 3.836 14 H 0.066 0.934 15 N -0.703 5.703 16 C -0.243 4.243 17 H 0.073 0.927 18 C -0.010 4.010 19 N -0.933 5.933 20 Si 0.909 3.091 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.168 4.168 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.407 0.593 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.378 0.622 40 H 0.257 0.743 41 H 0.070 0.930 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.679 -1.371 -10.828 11.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.162 4.162 3 C -0.107 4.107 4 C -0.079 4.079 5 C -0.199 4.199 6 C -0.199 4.199 7 C 0.312 3.688 8 O -0.434 6.434 9 N -0.350 5.350 10 C 0.017 3.983 11 H 0.107 0.893 12 C -0.229 4.229 13 C 0.052 3.948 14 H 0.084 0.916 15 N -0.344 5.344 16 C -0.374 4.374 17 H 0.091 0.909 18 C -0.206 4.206 19 N -0.581 5.581 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.208 4.208 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.127 0.873 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.246 0.754 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.214 0.786 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.830 -0.772 -11.206 11.380 hybrid contribution -0.280 -0.554 1.235 1.382 sum -2.110 -1.326 -9.971 10.278 Atomic orbital electron populations 1.23812 0.95971 1.01607 1.02275 1.22974 0.95943 0.98452 0.98792 1.20585 0.97479 0.95300 0.97309 1.20728 0.95975 0.93217 0.97934 1.21895 1.00610 1.02177 0.95252 1.21907 0.98525 0.97151 1.02361 1.20505 0.79253 0.88285 0.80719 1.90626 1.66041 1.48506 1.38255 1.45877 1.39838 1.19319 1.29993 1.21755 0.92596 0.85181 0.98748 0.89330 1.24322 1.02360 0.97765 0.98468 1.21258 0.92405 0.90681 0.90465 0.91589 1.42208 1.76357 1.09634 1.06199 1.19285 1.36362 0.97403 0.84314 0.90878 1.24718 1.01791 0.95864 0.98221 1.69608 1.51065 1.02143 1.35238 0.86163 0.78023 0.76745 0.85070 1.21708 1.21747 1.20728 1.23858 0.95915 1.02288 0.98709 0.88739 0.88713 0.87268 0.90554 0.90923 0.91625 0.90252 0.92589 0.92426 0.91555 0.91308 0.75375 0.90562 0.91146 0.78630 0.93367 0.91145 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.13 14.32 29.02 0.42 -1.72 16 2 C -0.14 -1.63 7.65 -36.02 -0.28 -1.91 16 3 C -0.07 -0.93 4.02 -27.88 -0.11 -1.04 16 4 C -0.08 -1.10 0.64 -155.65 -0.10 -1.20 16 5 C -0.14 -2.20 8.12 37.16 0.30 -1.90 16 6 C -0.14 -1.81 8.11 37.16 0.30 -1.51 16 7 C 0.53 9.20 6.48 -10.99 -0.07 9.13 16 8 O -0.56 -11.12 15.60 5.56 0.09 -11.04 16 9 N -0.70 -12.20 4.90 -53.02 -0.26 -12.46 16 10 C 0.12 2.09 4.30 -67.12 -0.29 1.80 16 11 H 0.09 1.50 7.50 -51.93 -0.39 1.11 16 12 C -0.19 -3.35 7.70 -25.77 -0.20 -3.55 16 13 C 0.16 3.15 4.57 -66.97 -0.31 2.85 16 14 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 15 N -0.70 -16.48 5.18 -52.50 -0.27 -16.75 16 16 C -0.24 -6.41 9.97 -15.06 -0.15 -6.56 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 19 N -0.93 -25.96 13.06 55.49 0.72 -25.23 16 20 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.17 -2.68 7.58 -25.91 -0.20 -2.88 16 25 H 0.09 0.87 8.06 -52.49 -0.42 0.44 16 26 H 0.09 1.01 7.84 -52.49 -0.41 0.60 16 27 H 0.11 1.11 6.81 -52.49 -0.36 0.75 16 28 H 0.08 1.04 8.10 -51.93 -0.42 0.61 16 29 H 0.07 1.05 7.75 -51.93 -0.40 0.65 16 30 H 0.06 0.91 7.22 -51.93 -0.37 0.54 16 31 H 0.08 1.43 7.56 -51.93 -0.39 1.04 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.89 7.57 -51.93 -0.39 0.50 16 35 H 0.07 0.76 6.52 -51.93 -0.34 0.42 16 36 H 0.41 7.43 5.00 -40.82 -0.20 7.23 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 39 H 0.38 9.01 5.34 -40.82 -0.22 8.80 16 40 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 336.93 15.07 5.08 5.08 Total: -1.00 -28.97 336.93 -7.27 -36.24 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -6.83 Total: 16.44 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -0.78 Total: -8.84 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.19 Total: -54.44 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.97 -7.27 -36.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661658708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.391 kcal (2) G-P(sol) polarization free energy of solvation -28.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds