Wall clock time and date at job start Mon Mar 30 2020 01:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50706 * 119.99552 * 2 1 4 4 C 1.53002 * 109.46925 * 125.00457 * 3 2 1 5 5 C 1.53008 * 109.46800 * 299.99957 * 4 3 2 6 6 C 1.53005 * 109.47274 * 59.99521 * 4 3 2 7 7 C 1.50696 * 109.47300 * 180.02562 * 4 3 2 8 8 O 1.21279 * 119.99697 * 359.97438 * 7 4 3 9 9 N 1.34777 * 120.00141 * 179.97438 * 7 4 3 10 10 C 1.46496 * 119.99875 * 179.97438 * 9 7 4 11 11 H 1.09001 * 112.85351 * 334.67343 * 10 9 7 12 12 C 1.53787 * 113.61045 * 105.86724 * 10 9 7 13 13 C 1.54050 * 86.98640 * 89.16359 * 12 10 9 14 14 H 1.08992 * 113.70067 * 139.98733 * 13 12 10 15 15 N 1.46501 * 113.61088 * 270.88404 * 13 12 10 16 16 C 1.36939 * 120.00215 * 252.48920 * 15 13 12 17 17 H 1.07994 * 119.99384 * 0.02562 * 16 15 13 18 18 C 1.38813 * 120.00140 * 179.97438 * 16 15 13 19 19 N 1.31615 * 119.99784 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99730 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47244 * 90.00185 * 20 18 16 22 22 H 1.48504 * 109.46808 * 210.00138 * 20 18 16 23 23 H 1.48505 * 109.47274 * 329.99808 * 20 18 16 24 24 C 1.53785 * 87.07917 * 25.42932 * 13 12 10 25 25 H 1.08001 * 120.00035 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.00460 * 359.97438 * 1 2 3 27 27 H 1.07994 * 120.00244 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47318 * 244.99691 * 3 2 1 29 29 H 1.09000 * 109.47161 * 5.00322 * 3 2 1 30 30 H 1.09002 * 109.47288 * 60.00162 * 5 4 3 31 31 H 1.09001 * 109.46630 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47188 * 300.00076 * 5 4 3 33 33 H 1.08996 * 109.46524 * 60.00319 * 6 4 3 34 34 H 1.09001 * 109.46962 * 180.02562 * 6 4 3 35 35 H 1.08992 * 109.47199 * 300.00708 * 6 4 3 36 36 H 0.96999 * 120.00043 * 0.02562 * 9 7 4 37 37 H 1.09002 * 113.61105 * 203.65930 * 12 10 9 38 38 H 1.08994 * 113.61807 * 334.56363 * 12 10 9 39 39 H 0.97006 * 119.99809 * 72.48950 * 15 13 12 40 40 H 0.97006 * 119.99670 * 179.97438 * 19 18 16 41 41 H 1.08997 * 113.61896 * 220.02700 * 24 13 12 42 42 H 1.08998 * 113.61544 * 89.11978 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 6 2.2520 1.1962 2.4890 6 6 4.0245 0.1730 1.0558 7 6 3.7880 2.6385 1.1820 8 8 3.5694 3.4649 0.3217 9 7 4.7043 2.8876 2.1385 10 6 5.4366 4.1564 2.1385 11 1 5.5025 4.6072 1.1483 12 6 4.9739 5.1346 3.2312 13 6 6.0160 4.4718 4.1520 14 1 6.5500 5.1773 4.7884 15 7 5.4966 3.3189 4.8917 16 6 5.2601 3.4184 6.2368 17 1 5.4562 4.3469 6.7522 18 6 4.7674 2.3261 6.9376 19 7 4.5281 1.1947 6.3092 20 14 4.4442 2.4621 8.7723 21 1 3.0497 2.9205 8.9967 22 1 4.6373 1.1343 9.4087 23 1 5.3888 3.4396 9.3703 24 6 6.7845 4.0896 2.8759 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5401 0.9353 0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 2.6212 1.4028 -0.9313 29 1 1.3584 2.1317 0.0896 30 1 1.7071 0.2522 2.4890 31 1 2.9443 1.2157 3.3307 32 1 1.5470 2.0227 2.5786 33 1 4.5822 0.2706 0.1245 34 1 4.7164 0.1927 1.8979 35 1 3.4796 -0.7709 1.0557 36 1 4.8794 2.2265 2.8264 37 1 5.1928 6.1781 3.0042 38 1 3.9438 4.9770 3.5507 39 1 5.3202 2.4850 4.4285 40 1 4.1841 0.4313 6.7990 41 1 7.2151 3.0889 2.9087 42 1 7.4974 4.8478 2.5519 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661658708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:21 Heat of formation + Delta-G solvation = -12.917938 kcal Electronic energy + Delta-G solvation = -21210.822796 eV Core-core repulsion = 18191.277614 eV Total energy + Delta-G solvation = -3019.545181 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.56445 -39.76719 -37.46088 -35.47445 -34.44963 -33.17442 -31.73337 -28.30380 -27.56621 -26.57163 -26.38207 -25.13263 -23.19170 -21.11074 -20.47143 -19.72668 -19.17170 -17.72054 -17.17996 -16.65504 -16.36987 -15.93238 -15.79822 -15.66407 -14.92708 -14.83983 -14.78630 -14.30812 -13.74079 -13.53891 -13.37428 -13.23732 -13.20025 -12.98880 -12.79670 -12.61596 -12.52114 -12.15277 -12.07180 -11.83694 -11.83298 -11.75160 -11.69754 -11.14598 -10.82244 -10.63545 -10.15725 -9.92296 -8.99428 -7.93679 -5.20994 1.43220 1.49395 1.50415 1.57836 1.61613 2.23349 2.57343 3.38607 3.53846 3.67668 3.76880 3.85505 3.93002 4.01457 4.21248 4.24580 4.31759 4.36102 4.41731 4.71568 4.75115 4.79469 4.85062 4.87852 4.88998 4.94061 4.98761 5.06912 5.08368 5.13934 5.22620 5.30401 5.33311 5.37800 5.54666 5.73732 5.78758 5.94660 6.29716 6.55870 7.22292 7.36404 8.08558 8.32492 9.28668 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.016800 B = 0.006157 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.225920 B = 4546.476557 C = 5741.932153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.153 4.153 3 C -0.063 4.063 4 C -0.070 4.070 5 C -0.132 4.132 6 C -0.138 4.138 7 C 0.520 3.480 8 O -0.583 6.583 9 N -0.699 5.699 10 C 0.119 3.881 11 H 0.094 0.906 12 C -0.179 4.179 13 C 0.146 3.854 14 H 0.070 0.930 15 N -0.715 5.715 16 C -0.247 4.247 17 H 0.074 0.926 18 C -0.064 4.064 19 N -0.957 5.957 20 Si 0.966 3.034 21 H -0.293 1.293 22 H -0.295 1.295 23 H -0.273 1.273 24 C -0.144 4.144 25 H 0.114 0.886 26 H 0.090 0.910 27 H 0.127 0.873 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.042 0.958 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.404 0.596 37 H 0.105 0.895 38 H 0.037 0.963 39 H 0.373 0.627 40 H 0.252 0.748 41 H 0.066 0.934 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.302 -1.559 -11.408 11.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.171 4.171 3 C -0.101 4.101 4 C -0.073 4.073 5 C -0.189 4.189 6 C -0.195 4.195 7 C 0.308 3.692 8 O -0.464 6.464 9 N -0.350 5.350 10 C 0.013 3.987 11 H 0.112 0.888 12 C -0.221 4.221 13 C 0.036 3.964 14 H 0.088 0.912 15 N -0.355 5.355 16 C -0.379 4.379 17 H 0.092 0.908 18 C -0.257 4.257 19 N -0.606 5.606 20 Si 0.796 3.204 21 H -0.221 1.221 22 H -0.222 1.222 23 H -0.198 1.198 24 C -0.183 4.183 25 H 0.133 0.867 26 H 0.108 0.892 27 H 0.145 0.855 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.242 0.758 37 H 0.123 0.877 38 H 0.056 0.944 39 H 0.208 0.792 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.431 -0.924 -11.796 11.918 hybrid contribution -0.412 -0.401 1.386 1.501 sum -1.843 -1.325 -10.409 10.654 Atomic orbital electron populations 1.24003 0.95872 1.02414 1.00776 1.22959 0.96172 0.97878 1.00070 1.20500 0.96944 0.96157 0.96477 1.20736 0.96263 0.92429 0.97893 1.21784 0.99824 1.02627 0.94713 1.21901 0.98112 0.97165 1.02356 1.21065 0.78994 0.89032 0.80104 1.90602 1.66891 1.49626 1.39288 1.45970 1.39904 1.19405 1.29743 1.21857 0.93173 0.84844 0.98792 0.88776 1.24259 0.99906 0.99623 0.98286 1.21530 0.93490 0.89836 0.91536 0.91223 1.42327 1.76822 1.10752 1.05630 1.19597 1.35259 0.97234 0.85791 0.90811 1.25393 1.02659 0.95948 1.01694 1.69732 1.52233 1.02483 1.36183 0.85256 0.77587 0.76448 0.81095 1.22059 1.22163 1.19778 1.23757 0.95667 1.03182 0.95742 0.86746 0.89151 0.85509 0.90777 0.92596 0.89739 0.93099 0.93895 0.91471 0.92649 0.89145 0.75827 0.87709 0.94420 0.79197 0.93913 0.91538 0.85553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.76 14.32 67.79 0.97 -2.79 16 2 C -0.15 -3.19 7.65 25.65 0.20 -3.00 16 3 C -0.06 -1.65 4.02 29.85 0.12 -1.53 16 4 C -0.07 -2.03 0.64 -52.92 -0.03 -2.06 16 5 C -0.13 -4.14 8.12 71.98 0.58 -3.55 16 6 C -0.14 -3.36 8.11 71.98 0.58 -2.77 16 7 C 0.52 18.33 6.48 87.66 0.57 18.89 16 8 O -0.58 -23.46 15.60 -3.03 -0.05 -23.51 16 9 N -0.70 -24.57 4.90 -440.04 -2.16 -26.73 16 10 C 0.12 3.92 4.30 45.52 0.20 4.12 16 11 H 0.09 3.05 7.50 -2.39 -0.02 3.03 16 12 C -0.18 -6.26 7.70 31.21 0.24 -6.02 16 13 C 0.15 5.48 4.57 45.61 0.21 5.69 16 14 H 0.07 2.55 8.10 -2.39 -0.02 2.53 16 15 N -0.71 -33.64 5.18 -320.02 -1.66 -35.30 16 16 C -0.25 -13.08 9.97 84.03 0.84 -12.24 16 17 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 18 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 19 N -0.96 -54.00 13.06 21.65 0.28 -53.72 16 20 Si 0.97 44.53 29.55 68.60 2.03 46.56 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 22 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 24 C -0.14 -4.31 7.58 31.12 0.24 -4.08 16 25 H 0.11 1.78 8.06 -2.91 -0.02 1.75 16 26 H 0.09 1.82 7.84 -2.91 -0.02 1.79 16 27 H 0.13 2.21 6.81 -2.91 -0.02 2.19 16 28 H 0.07 1.96 8.10 -2.39 -0.02 1.94 16 29 H 0.06 1.63 7.75 -2.39 -0.02 1.61 16 30 H 0.08 2.29 7.22 -2.39 -0.02 2.27 16 31 H 0.05 1.89 7.56 -2.39 -0.02 1.87 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.05 1.47 7.57 -2.39 -0.02 1.45 16 35 H 0.09 1.80 6.52 -2.39 -0.02 1.79 16 36 H 0.40 15.02 5.00 -92.71 -0.46 14.56 16 37 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 38 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.37 18.10 5.34 -92.70 -0.50 17.60 16 40 H 0.25 13.92 8.31 -92.70 -0.77 13.15 16 41 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.13 2.88 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -62.14 336.93 3.66 -58.47 By element: Atomic # 1 Polarization: 46.51 SS G_CDS: 0.04 Total: 46.55 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: 5.17 Total: -12.33 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -3.53 Total: -115.74 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.05 Total: -23.51 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -62.14 3.66 -58.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661658708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.556 kcal (2) G-P(sol) polarization free energy of solvation -62.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds