Wall clock time and date at job start Mon Mar 30 2020 01:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.47011 * 2 1 4 4 O 1.21279 * 119.99742 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99855 * 179.97438 * 3 2 1 6 6 C 1.46498 * 119.99807 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.47165 * 180.02562 * 6 5 3 8 8 H 1.08994 * 109.43218 * 59.23546 * 7 6 5 9 9 C 1.53143 * 109.43403 * 179.14657 * 7 6 5 10 10 C 1.53610 * 108.93213 * 66.13981 * 9 7 6 11 11 H 1.09000 * 112.60025 * 187.94805 * 10 9 7 12 12 C 1.54615 * 107.83377 * 312.25261 * 10 9 7 13 13 C 1.55895 * 104.89684 * 88.62400 * 12 10 9 14 14 C 1.54611 * 103.99833 * 0.02627 * 13 12 10 15 15 H 1.08996 * 112.19167 * 147.19082 * 14 13 12 16 16 C 1.53146 * 109.43370 * 299.32452 * 7 6 5 17 17 N 1.48292 * 107.25338 * 64.02391 * 10 9 7 18 18 C 1.36935 * 128.21081 * 107.43056 * 17 10 9 19 19 H 1.07997 * 120.00154 * 168.94155 * 18 17 10 20 20 C 1.38820 * 119.99850 * 348.93495 * 18 17 10 21 21 N 1.31620 * 119.99785 * 340.24884 * 20 18 17 22 22 Si 1.86789 * 120.00016 * 160.24677 * 20 18 17 23 23 H 1.48506 * 109.47358 * 84.99258 * 22 20 18 24 24 H 1.48500 * 109.47214 * 204.99656 * 22 20 18 25 25 H 1.48503 * 109.47248 * 324.99582 * 22 20 18 26 26 H 1.08998 * 109.47278 * 300.00035 * 1 2 3 27 27 H 1.08998 * 109.47469 * 60.00375 * 1 2 3 28 28 H 1.09007 * 109.47339 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47278 * 239.99965 * 2 1 3 30 30 H 1.09002 * 109.47129 * 119.99996 * 2 1 3 31 31 H 0.97000 * 120.00246 * 0.02562 * 5 3 2 32 32 H 1.08998 * 109.46954 * 60.00505 * 6 5 3 33 33 H 1.09002 * 109.47393 * 300.00573 * 6 5 3 34 34 H 1.09004 * 109.57200 * 185.99142 * 9 7 6 35 35 H 1.09001 * 109.57126 * 306.35812 * 9 7 6 36 36 H 1.08996 * 110.38155 * 207.45602 * 12 10 9 37 37 H 1.08996 * 110.38329 * 329.82740 * 12 10 9 38 38 H 1.09001 * 110.92786 * 241.36608 * 13 12 10 39 39 H 1.08999 * 110.56333 * 118.50710 * 13 12 10 40 40 H 1.09004 * 109.57095 * 53.64227 * 16 7 6 41 41 H 1.09003 * 109.56795 * 174.00542 * 16 7 6 42 42 H 0.96995 * 119.99981 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3573 1.6671 0.0005 6 6 3.8456 3.0483 0.0000 7 6 5.3757 3.0484 0.0001 8 1 5.7384 2.5223 -0.8829 9 6 5.8851 4.4924 -0.0220 10 6 5.4966 5.1782 1.2964 11 1 5.7076 6.2476 1.2904 12 6 4.0033 4.8793 1.5635 13 6 3.9991 3.5403 2.3617 14 6 5.4964 3.1767 2.4900 15 1 5.7157 2.6583 3.4234 16 6 5.8851 2.3417 1.2596 17 7 6.2113 4.4719 2.3869 18 6 7.2783 4.9114 3.1241 19 1 7.5866 4.3679 4.0050 20 6 7.9638 6.0555 2.7391 21 7 7.8662 6.4963 1.5027 22 14 9.0245 6.9693 3.9755 23 1 10.3732 6.3496 4.0244 24 1 9.1477 8.3915 3.5665 25 1 8.3959 6.8932 5.3188 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9877 0.9299 0.0005 32 1 3.4819 3.5626 0.8895 33 1 3.4826 3.5617 -0.8905 34 1 6.9699 4.4953 -0.1292 35 1 5.4325 5.0266 -0.8575 36 1 3.5572 5.6762 2.1585 37 1 3.4658 4.7603 0.6228 38 1 3.4652 2.7629 1.8152 39 1 3.5575 3.6837 3.3479 40 1 5.4325 1.3527 1.3317 41 1 6.9699 2.2460 1.2110 42 1 8.3449 7.2959 1.2338 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733557732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:32 Heat of formation + Delta-G solvation = 69.075573 kcal Electronic energy + Delta-G solvation = -21926.587554 eV Core-core repulsion = 18910.597878 eV Total energy + Delta-G solvation = -3015.989676 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.18101 -38.97955 -34.71242 -32.96983 -32.52100 -31.36646 -30.64891 -29.65992 -26.82526 -24.46194 -23.33461 -23.03472 -20.63361 -20.27884 -19.40315 -18.72570 -17.15436 -16.82229 -16.03673 -15.57659 -15.08600 -14.46993 -14.04034 -13.78506 -13.10114 -13.03045 -12.68759 -12.64092 -12.44408 -11.91753 -11.80934 -11.71205 -11.54389 -11.35786 -11.26175 -11.15151 -10.87037 -10.78110 -10.53791 -10.13989 -9.86942 -9.64275 -9.47125 -9.41934 -9.35285 -9.20550 -8.55762 -8.11706 -6.84579 -5.79507 -3.05325 2.83557 3.39008 3.46471 3.47454 3.48648 4.48934 4.80979 5.01825 5.02589 5.23294 5.29945 5.43746 5.47016 5.51138 5.59794 5.69509 5.74864 5.84178 5.84807 5.91977 6.07916 6.10341 6.13145 6.19662 6.30136 6.43212 6.47010 6.57859 6.63923 6.69082 6.78373 6.88502 6.96013 7.06446 7.11775 7.52494 7.56850 7.74833 7.76372 8.20736 8.45173 9.12509 9.77395 10.56238 11.34481 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.045592 B = 0.004914 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.999275 B = 5696.565587 C = 5754.635002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.146 4.146 3 C 0.502 3.498 4 O -0.547 6.547 5 N -0.724 5.724 6 C 0.003 3.997 7 C -0.086 4.086 8 H 0.050 0.950 9 C -0.110 4.110 10 C 0.182 3.818 11 H 0.104 0.896 12 C -0.170 4.170 13 C -0.161 4.161 14 C 0.151 3.849 15 H 0.064 0.936 16 C -0.124 4.124 17 N -0.583 5.583 18 C -0.226 4.226 19 H 0.075 0.925 20 C -0.003 4.003 21 N -0.905 5.905 22 Si 0.902 3.098 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.282 1.282 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.393 0.607 32 H 0.193 0.807 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.040 0.960 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.051 0.949 40 H 0.041 0.959 41 H 0.062 0.938 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.102 -11.653 -3.425 15.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.187 4.187 3 C 0.288 3.712 4 O -0.425 6.425 5 N -0.375 5.375 6 C -0.116 4.116 7 C -0.105 4.105 8 H 0.068 0.932 9 C -0.150 4.150 10 C 0.075 3.925 11 H 0.122 0.878 12 C -0.209 4.209 13 C -0.200 4.200 14 C 0.043 3.957 15 H 0.082 0.918 16 C -0.164 4.164 17 N -0.304 5.304 18 C -0.354 4.354 19 H 0.093 0.907 20 C -0.201 4.201 21 N -0.551 5.551 22 Si 0.732 3.268 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.208 1.208 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.227 0.773 32 H 0.208 0.792 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.435 -10.771 -3.404 14.718 hybrid contribution 1.170 -0.029 0.274 1.202 sum -8.266 -10.800 -3.130 13.956 Atomic orbital electron populations 1.21507 0.93290 1.01186 1.03350 1.21643 0.98521 0.94495 1.03996 1.20695 0.82479 0.91547 0.76430 1.90684 1.55357 1.46569 1.49918 1.46427 1.06658 1.10107 1.74283 1.25209 0.95987 0.82305 1.08119 1.21266 0.92903 0.98946 0.97345 0.93169 1.22001 1.02170 0.92190 0.98624 1.21407 0.85977 0.98530 0.86621 0.87833 1.23785 1.01133 0.96285 0.99660 1.23645 0.99031 0.97844 0.99451 1.21474 0.90514 0.88674 0.95050 0.91811 1.22195 1.00793 0.96756 0.96606 1.45202 1.33481 1.11844 1.39881 1.18929 1.05224 1.07739 1.03529 0.90724 1.24703 0.99128 1.00223 0.96028 1.69972 1.45628 1.24887 1.14631 0.86311 0.79969 0.79422 0.81125 1.21656 1.21635 1.20835 0.91954 0.92120 0.92430 0.89376 0.89140 0.77323 0.79224 0.93412 0.90210 0.94090 0.92702 0.89405 0.88781 0.92979 0.94061 0.91895 0.93743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.20 37.15 0.34 -0.95 16 2 C -0.15 -1.37 6.42 -27.88 -0.18 -1.55 16 3 C 0.50 6.90 7.60 -10.98 -0.08 6.82 16 4 O -0.55 -9.74 15.98 5.56 0.09 -9.65 16 5 N -0.72 -9.57 4.39 -60.29 -0.26 -9.83 16 6 C 0.00 0.04 2.66 -4.04 -0.01 0.03 16 7 C -0.09 -1.47 2.76 -90.47 -0.25 -1.72 16 8 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 9 C -0.11 -2.27 5.32 -26.34 -0.14 -2.41 16 10 C 0.18 4.10 3.16 -65.78 -0.21 3.89 16 11 H 0.10 2.69 6.47 -51.93 -0.34 2.35 16 12 C -0.17 -3.28 5.75 -24.34 -0.14 -3.42 16 13 C -0.16 -2.90 5.79 -24.34 -0.14 -3.04 16 14 C 0.15 2.99 4.28 -65.73 -0.28 2.71 16 15 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 16 C -0.12 -2.16 5.27 -26.29 -0.14 -2.29 16 17 N -0.58 -14.05 2.82 -152.81 -0.43 -14.48 16 18 C -0.23 -6.08 10.33 -15.06 -0.16 -6.23 16 19 H 0.07 1.97 7.90 -52.49 -0.41 1.55 16 20 C 0.00 -0.09 5.30 -17.43 -0.09 -0.19 16 21 N -0.91 -25.35 11.00 55.49 0.61 -24.74 16 22 Si 0.90 21.55 29.60 -169.99 -5.03 16.52 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 26 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 27 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.39 4.26 7.36 -40.82 -0.30 3.96 16 32 H 0.19 3.28 1.13 -164.46 -0.19 3.09 16 33 H 0.05 0.82 7.98 -51.93 -0.41 0.40 16 34 H 0.08 1.91 8.07 -51.93 -0.42 1.49 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.09 1.59 4.83 -51.93 -0.25 1.34 16 38 H 0.09 1.56 4.04 -51.93 -0.21 1.35 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.04 0.59 6.76 -51.93 -0.35 0.24 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 311.29 15.07 4.69 4.69 Total: -1.00 -29.96 311.29 -8.48 -38.44 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -6.66 Total: 7.41 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -1.48 Total: -8.35 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: -0.09 Total: -49.05 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.96 -8.48 -38.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733557732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.513 kcal (2) G-P(sol) polarization free energy of solvation -29.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds