Wall clock time and date at job start Mon Mar 30 2020 01:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.47011 * 2 1 4 4 O 1.21279 * 119.99742 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99855 * 179.97438 * 3 2 1 6 6 C 1.46498 * 119.99807 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.47165 * 180.02562 * 6 5 3 8 8 H 1.08994 * 109.43218 * 59.23546 * 7 6 5 9 9 C 1.53143 * 109.43403 * 179.14657 * 7 6 5 10 10 C 1.53610 * 108.93213 * 66.13981 * 9 7 6 11 11 H 1.09000 * 112.60025 * 187.94805 * 10 9 7 12 12 C 1.54615 * 107.83377 * 312.25261 * 10 9 7 13 13 C 1.55895 * 104.89684 * 88.62400 * 12 10 9 14 14 C 1.54611 * 103.99833 * 0.02627 * 13 12 10 15 15 H 1.08996 * 112.19167 * 147.19082 * 14 13 12 16 16 C 1.53146 * 109.43370 * 299.32452 * 7 6 5 17 17 N 1.48292 * 107.25338 * 64.02391 * 10 9 7 18 18 C 1.36935 * 128.21081 * 107.43056 * 17 10 9 19 19 H 1.07997 * 120.00154 * 168.94155 * 18 17 10 20 20 C 1.38820 * 119.99850 * 348.93495 * 18 17 10 21 21 N 1.31620 * 119.99785 * 340.24884 * 20 18 17 22 22 Si 1.86789 * 120.00016 * 160.24677 * 20 18 17 23 23 H 1.48506 * 109.47358 * 84.99258 * 22 20 18 24 24 H 1.48500 * 109.47214 * 204.99656 * 22 20 18 25 25 H 1.48503 * 109.47248 * 324.99582 * 22 20 18 26 26 H 1.08998 * 109.47278 * 300.00035 * 1 2 3 27 27 H 1.08998 * 109.47469 * 60.00375 * 1 2 3 28 28 H 1.09007 * 109.47339 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47278 * 239.99965 * 2 1 3 30 30 H 1.09002 * 109.47129 * 119.99996 * 2 1 3 31 31 H 0.97000 * 120.00246 * 0.02562 * 5 3 2 32 32 H 1.08998 * 109.46954 * 60.00505 * 6 5 3 33 33 H 1.09002 * 109.47393 * 300.00573 * 6 5 3 34 34 H 1.09004 * 109.57200 * 185.99142 * 9 7 6 35 35 H 1.09001 * 109.57126 * 306.35812 * 9 7 6 36 36 H 1.08996 * 110.38155 * 207.45602 * 12 10 9 37 37 H 1.08996 * 110.38329 * 329.82740 * 12 10 9 38 38 H 1.09001 * 110.92786 * 241.36608 * 13 12 10 39 39 H 1.08999 * 110.56333 * 118.50710 * 13 12 10 40 40 H 1.09004 * 109.57095 * 53.64227 * 16 7 6 41 41 H 1.09003 * 109.56795 * 174.00542 * 16 7 6 42 42 H 0.96995 * 119.99981 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3573 1.6671 0.0005 6 6 3.8456 3.0483 0.0000 7 6 5.3757 3.0484 0.0001 8 1 5.7384 2.5223 -0.8829 9 6 5.8851 4.4924 -0.0220 10 6 5.4966 5.1782 1.2964 11 1 5.7076 6.2476 1.2904 12 6 4.0033 4.8793 1.5635 13 6 3.9991 3.5403 2.3617 14 6 5.4964 3.1767 2.4900 15 1 5.7157 2.6583 3.4234 16 6 5.8851 2.3417 1.2596 17 7 6.2113 4.4719 2.3869 18 6 7.2783 4.9114 3.1241 19 1 7.5866 4.3679 4.0050 20 6 7.9638 6.0555 2.7391 21 7 7.8662 6.4963 1.5027 22 14 9.0245 6.9693 3.9755 23 1 10.3732 6.3496 4.0244 24 1 9.1477 8.3915 3.5665 25 1 8.3959 6.8932 5.3188 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9877 0.9299 0.0005 32 1 3.4819 3.5626 0.8895 33 1 3.4826 3.5617 -0.8905 34 1 6.9699 4.4953 -0.1292 35 1 5.4325 5.0266 -0.8575 36 1 3.5572 5.6762 2.1585 37 1 3.4658 4.7603 0.6228 38 1 3.4652 2.7629 1.8152 39 1 3.5575 3.6837 3.3479 40 1 5.4325 1.3527 1.3317 41 1 6.9699 2.2460 1.2110 42 1 8.3449 7.2959 1.2338 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733557732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:31 Heat of formation + Delta-G solvation = 50.544075 kcal Electronic energy + Delta-G solvation = -21927.391140 eV Core-core repulsion = 18910.597878 eV Total energy + Delta-G solvation = -3016.793262 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.65251 -40.16566 -36.18895 -34.49529 -33.57181 -32.86137 -32.27422 -31.36753 -28.38791 -25.85306 -24.88519 -24.40279 -22.11322 -21.53530 -20.88990 -20.35487 -18.73050 -18.00349 -17.49267 -16.82595 -16.50824 -16.12614 -15.55726 -14.94383 -14.57709 -14.44364 -14.33616 -13.98681 -13.67140 -13.46584 -13.17727 -13.06892 -12.98826 -12.76629 -12.66818 -12.54843 -12.52160 -12.29732 -12.00877 -11.93618 -11.39664 -11.21861 -11.05052 -10.92861 -10.80640 -10.69898 -10.41901 -9.43460 -8.77237 -7.85155 -5.10470 1.46352 1.49394 1.57201 1.80828 2.42633 2.52921 3.31856 3.59905 3.92286 3.92971 3.97849 4.05543 4.23442 4.29685 4.33738 4.36034 4.39690 4.55328 4.62024 4.71889 4.79243 4.82876 4.90514 5.00498 5.03937 5.08654 5.11576 5.14703 5.19412 5.31178 5.37886 5.41255 5.51858 5.55474 5.59202 5.65153 5.78586 5.87772 6.25928 6.73931 7.10107 7.43467 7.79369 8.60163 9.27599 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.045592 B = 0.004914 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.999275 B = 5696.565587 C = 5754.635002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 C 0.498 3.502 4 O -0.593 6.593 5 N -0.715 5.715 6 C 0.014 3.986 7 C -0.075 4.075 8 H 0.069 0.931 9 C -0.103 4.103 10 C 0.176 3.824 11 H 0.060 0.940 12 C -0.162 4.162 13 C -0.147 4.147 14 C 0.141 3.859 15 H 0.067 0.933 16 C -0.115 4.115 17 N -0.605 5.605 18 C -0.235 4.235 19 H 0.075 0.925 20 C -0.056 4.056 21 N -0.930 5.930 22 Si 0.961 3.039 23 H -0.286 1.286 24 H -0.297 1.297 25 H -0.277 1.277 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.409 0.591 32 H 0.180 0.820 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.104 0.896 38 H 0.117 0.883 39 H 0.054 0.946 40 H 0.085 0.915 41 H 0.039 0.961 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.178 -14.512 -3.347 18.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.178 4.178 3 C 0.286 3.714 4 O -0.474 6.474 5 N -0.367 5.367 6 C -0.106 4.106 7 C -0.093 4.093 8 H 0.087 0.913 9 C -0.143 4.143 10 C 0.069 3.931 11 H 0.078 0.922 12 C -0.201 4.201 13 C -0.185 4.185 14 C 0.035 3.965 15 H 0.085 0.915 16 C -0.154 4.154 17 N -0.327 5.327 18 C -0.364 4.364 19 H 0.093 0.907 20 C -0.250 4.250 21 N -0.578 5.578 22 Si 0.791 3.209 23 H -0.213 1.213 24 H -0.223 1.223 25 H -0.203 1.203 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.246 0.754 32 H 0.195 0.805 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.121 0.879 38 H 0.135 0.865 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.058 0.942 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.513 -13.688 -3.318 17.575 hybrid contribution 1.475 0.837 0.240 1.713 sum -9.038 -12.851 -3.077 16.009 Atomic orbital electron populations 1.21530 0.93714 1.02470 1.01773 1.21704 0.98031 0.91486 1.06558 1.21537 0.81902 0.93028 0.74922 1.90677 1.56417 1.48415 1.51845 1.46255 1.07154 1.09247 1.74046 1.24747 0.94650 0.84127 1.07094 1.21120 0.93735 0.96363 0.98128 0.91254 1.21811 0.99712 0.94963 0.97828 1.21312 0.88011 0.96364 0.87440 0.92193 1.23737 0.98612 0.97079 1.00632 1.23573 0.97831 0.97454 0.99670 1.21747 0.91035 0.87366 0.96375 0.91518 1.22081 0.99685 0.98431 0.95231 1.45397 1.33202 1.14075 1.40057 1.19233 1.05613 1.07840 1.03716 0.90732 1.25384 1.01031 1.01211 0.97414 1.70140 1.46784 1.24869 1.15965 0.85367 0.78587 0.77711 0.79256 1.21335 1.22341 1.20284 0.93608 0.93732 0.89659 0.86646 0.86441 0.75412 0.80460 0.94271 0.94194 0.93460 0.93376 0.87893 0.86546 0.92697 0.89696 0.94178 0.94568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.20 71.98 0.66 -1.54 16 2 C -0.14 -1.97 6.42 29.85 0.19 -1.78 16 3 C 0.50 11.99 7.60 87.66 0.67 12.66 16 4 O -0.59 -19.96 15.98 -3.03 -0.05 -20.01 16 5 N -0.71 -16.08 4.39 -463.05 -2.03 -18.11 16 6 C 0.01 0.42 2.66 86.38 0.23 0.65 16 7 C -0.07 -2.41 2.76 -10.70 -0.03 -2.44 16 8 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 9 C -0.10 -4.32 5.32 30.85 0.16 -4.15 16 10 C 0.18 8.13 3.16 45.40 0.14 8.28 16 11 H 0.06 3.29 6.47 -2.39 -0.02 3.27 16 12 C -0.16 -6.20 5.75 32.15 0.18 -6.02 16 13 C -0.15 -5.01 5.79 32.14 0.19 -4.83 16 14 C 0.14 5.41 4.28 45.43 0.19 5.60 16 15 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 16 C -0.11 -3.73 5.27 30.88 0.16 -3.57 16 17 N -0.61 -29.56 2.82 -637.37 -1.80 -31.36 16 18 C -0.24 -12.87 10.33 84.04 0.87 -12.00 16 19 H 0.07 3.97 7.90 -2.91 -0.02 3.94 16 20 C -0.06 -3.11 5.30 84.86 0.45 -2.66 16 21 N -0.93 -54.31 11.00 21.65 0.24 -54.07 16 22 Si 0.96 45.42 29.60 68.60 2.03 47.45 16 23 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 24 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 25 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 26 H 0.04 0.88 8.10 -2.39 -0.02 0.86 16 27 H 0.04 0.85 8.10 -2.39 -0.02 0.83 16 28 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.41 6.74 7.36 -92.71 -0.68 6.05 16 32 H 0.18 5.75 1.13 -108.09 -0.12 5.62 16 33 H 0.04 1.26 7.98 -2.39 -0.02 1.24 16 34 H 0.04 1.97 8.07 -2.39 -0.02 1.95 16 35 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.10 3.64 4.83 -2.39 -0.01 3.62 16 38 H 0.12 3.47 4.04 -2.39 -0.01 3.46 16 39 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.08 2.03 6.76 -2.39 -0.02 2.02 16 41 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -67.95 311.29 2.68 -65.27 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.22 Total: 22.64 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 4.07 Total: -11.81 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -3.59 Total: -103.54 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.05 Total: -20.01 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -67.95 2.68 -65.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733557732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.812 kcal (2) G-P(sol) polarization free energy of solvation -67.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds