Wall clock time and date at job start Mon Mar 30 2020 00:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47210 * 2 1 4 4 N 1.46506 * 109.46992 * 179.97438 * 3 2 1 5 5 C 1.34773 * 119.99969 * 269.72101 * 4 3 2 6 6 O 1.21283 * 120.00092 * 180.02562 * 5 4 3 7 7 C 1.50702 * 120.00430 * 0.02562 * 5 4 3 8 8 C 1.52996 * 117.49684 * 248.74720 * 7 5 4 9 9 C 1.52996 * 117.50431 * 180.08354 * 7 5 4 10 10 C 1.46499 * 119.99936 * 90.00137 * 4 3 2 11 11 H 1.09001 * 110.63832 * 1.68420 * 10 4 3 12 12 C 1.55152 * 110.72029 * 125.02114 * 10 4 3 13 13 C 1.54912 * 101.58305 * 153.86569 * 12 10 4 14 14 N 1.47419 * 104.83130 * 322.99104 * 13 12 10 15 15 C 1.36938 * 125.64913 * 204.08930 * 14 13 12 16 16 H 1.08008 * 119.99964 * 180.02562 * 15 14 13 17 17 C 1.38805 * 119.99976 * 0.04519 * 15 14 13 18 18 N 1.31623 * 120.00175 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47123 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47233 * 119.99948 * 19 17 15 22 22 H 1.48499 * 109.47545 * 239.99708 * 19 17 15 23 23 C 1.47022 * 108.70361 * 24.12818 * 14 13 12 24 24 H 1.09000 * 109.46839 * 60.00324 * 1 2 3 25 25 H 1.08999 * 109.47114 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47037 * 300.00424 * 1 2 3 27 27 H 1.09000 * 109.47531 * 239.99583 * 2 1 3 28 28 H 1.09008 * 109.47250 * 120.00157 * 2 1 3 29 29 H 1.09000 * 109.46884 * 60.00289 * 3 2 1 30 30 H 1.09000 * 109.46955 * 299.99604 * 3 2 1 31 31 H 1.08999 * 115.54739 * 34.40663 * 7 5 4 32 32 H 1.08997 * 117.50067 * 359.97438 * 8 7 5 33 33 H 1.08999 * 117.49776 * 145.01697 * 8 7 5 34 34 H 1.08995 * 117.50041 * 214.97744 * 9 7 5 35 35 H 1.09007 * 117.49657 * 359.97438 * 9 7 5 36 36 H 1.09003 * 111.00389 * 271.94100 * 12 10 4 37 37 H 1.09000 * 111.00617 * 35.79182 * 12 10 4 38 38 H 1.09001 * 110.36656 * 204.15103 * 13 12 10 39 39 H 1.09001 * 110.36316 * 81.82591 * 13 12 10 40 40 H 0.96993 * 120.00114 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.88294 * 239.52302 * 23 14 13 42 42 H 1.09006 * 109.88675 * 118.35643 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1784 1.4483 1.1681 6 8 5.3912 1.4487 1.1686 7 6 3.4244 1.4543 2.4729 8 6 3.4965 2.7232 3.3246 9 6 4.2459 1.4627 3.7636 10 6 4.2381 1.4422 -1.2678 11 1 3.5475 1.4721 -2.1106 12 6 5.2338 2.6306 -1.3265 13 6 6.3055 2.0903 -2.3060 14 7 6.4180 0.6552 -1.9882 15 6 7.5099 -0.1336 -2.2346 16 1 7.4932 -1.1789 -1.9632 17 6 8.6382 0.4103 -2.8328 18 7 8.6584 1.6841 -3.1636 19 14 10.1279 -0.6656 -3.1684 20 1 9.8529 -2.0499 -2.7063 21 1 10.4113 -0.6780 -4.6260 22 1 11.3035 -0.1245 -2.4402 23 6 5.1634 0.2109 -1.3635 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 2.4869 0.8982 2.4766 32 1 4.0896 3.5535 2.9413 33 1 2.6066 3.0017 3.8890 34 1 3.8488 0.9126 4.6166 35 1 5.3319 1.4635 3.6690 36 1 4.7534 3.5235 -1.7267 37 1 5.6654 2.8276 -0.3452 38 1 7.2589 2.5917 -2.1394 39 1 5.9796 2.2260 -3.3373 40 1 9.4467 2.0640 -3.5820 41 1 5.3641 -0.1804 -0.3662 42 1 4.6950 -0.5578 -1.9783 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753311863.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:21 Heat of formation + Delta-G solvation = -0.900091 kcal Electronic energy + Delta-G solvation = -21373.889417 eV Core-core repulsion = 18354.865369 eV Total energy + Delta-G solvation = -3019.024048 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.50165 -38.87586 -37.11393 -36.87226 -34.56216 -33.23564 -31.05218 -29.20774 -27.03005 -26.79576 -24.85917 -23.31269 -22.52030 -22.15112 -21.91911 -19.65712 -18.98103 -18.14462 -17.35535 -16.75342 -16.26580 -16.10043 -15.62795 -15.43416 -15.23383 -14.87653 -14.41966 -14.05956 -13.66561 -13.57429 -13.36676 -13.08246 -12.93272 -12.78690 -12.68541 -12.51468 -12.42252 -12.18129 -12.01356 -11.99047 -11.87246 -11.62893 -11.48596 -11.42474 -11.29970 -10.77211 -10.45146 -9.56865 -8.88701 -7.78956 -5.22980 1.41364 1.44483 1.54423 1.57553 1.98406 2.48205 2.95970 3.29511 3.52079 3.72979 3.86087 3.87853 4.01024 4.01577 4.07724 4.16978 4.24551 4.31608 4.45690 4.59525 4.67666 4.74089 4.75105 4.76164 4.88460 4.94602 4.99691 5.01548 5.04509 5.09720 5.25636 5.27121 5.30257 5.40191 5.51020 5.62225 5.76475 5.80578 6.28577 6.53544 7.08706 7.33587 7.76203 8.40617 9.23276 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022261 B = 0.005434 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.476754 B = 5151.939200 C = 5676.105899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.142 4.142 3 C 0.106 3.894 4 N -0.599 5.599 5 C 0.524 3.476 6 O -0.572 6.572 7 C -0.195 4.195 8 C -0.133 4.133 9 C -0.159 4.159 10 C 0.152 3.848 11 H 0.116 0.884 12 C -0.141 4.141 13 C 0.161 3.839 14 N -0.619 5.619 15 C -0.238 4.238 16 H 0.073 0.927 17 C -0.069 4.069 18 N -0.950 5.950 19 Si 0.983 3.017 20 H -0.269 1.269 21 H -0.285 1.285 22 H -0.291 1.291 23 C 0.135 3.865 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.153 0.847 32 H 0.080 0.920 33 H 0.142 0.858 34 H 0.130 0.870 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.066 0.934 39 H -0.003 1.003 40 H 0.247 0.753 41 H 0.012 0.988 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.846 1.368 11.081 23.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.181 4.181 3 C -0.015 4.015 4 N -0.330 5.330 5 C 0.314 3.686 6 O -0.451 6.451 7 C -0.216 4.216 8 C -0.170 4.170 9 C -0.197 4.197 10 C 0.047 3.953 11 H 0.134 0.866 12 C -0.181 4.181 13 C 0.036 3.964 14 N -0.345 5.345 15 C -0.367 4.367 16 H 0.091 0.909 17 C -0.261 4.261 18 N -0.600 5.600 19 Si 0.811 3.189 20 H -0.194 1.194 21 H -0.211 1.211 22 H -0.218 1.218 23 C 0.008 3.992 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.124 0.876 30 H 0.112 0.888 31 H 0.170 0.830 32 H 0.098 0.902 33 H 0.160 0.840 34 H 0.148 0.852 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.015 0.985 40 H 0.057 0.943 41 H 0.030 0.970 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -20.046 1.362 10.987 22.899 hybrid contribution 1.404 -0.663 -0.624 1.673 sum -18.642 0.699 10.363 21.340 Atomic orbital electron populations 1.21657 0.93016 1.02372 1.02966 1.21966 0.97672 0.96581 1.01901 1.22000 0.76578 0.97720 1.05228 1.47968 1.07947 1.72780 1.04273 1.20492 0.87152 0.75134 0.85854 1.90785 1.16357 1.50201 1.87797 1.22318 1.03090 1.07301 0.88860 1.23026 1.03671 0.90045 1.00306 1.22993 0.98571 1.01996 0.96116 1.21907 0.92919 0.94244 0.86211 0.86597 1.23199 0.97070 0.97453 1.00342 1.21597 0.97616 0.84251 0.92943 1.44601 1.12230 1.07210 1.70420 1.19447 0.92342 0.92371 1.32567 0.90944 1.25660 1.01048 0.97856 1.01493 1.70077 1.29122 1.12502 1.48269 0.84941 0.78760 0.77941 0.77264 1.19368 1.21117 1.21814 1.21571 0.87057 0.95644 0.94911 0.91939 0.92462 0.90974 0.93287 0.92320 0.87619 0.88819 0.82974 0.90153 0.84037 0.85152 0.90946 0.89792 0.92269 0.91630 0.98547 0.94297 0.96981 0.96214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.91 71.98 0.71 -0.85 16 2 C -0.14 -2.40 6.15 30.59 0.19 -2.21 16 3 C 0.11 1.89 5.03 86.38 0.43 2.32 16 4 N -0.60 -17.59 2.54 -791.25 -2.01 -19.60 16 5 C 0.52 17.54 6.56 87.66 0.58 18.12 16 6 O -0.57 -26.42 12.61 -3.04 -0.04 -26.46 16 7 C -0.19 -4.30 4.79 -11.54 -0.06 -4.35 16 8 C -0.13 -2.38 10.24 30.62 0.31 -2.06 16 9 C -0.16 -3.45 10.05 30.62 0.31 -3.15 16 10 C 0.15 5.62 3.45 46.18 0.16 5.78 16 11 H 0.12 3.64 7.86 -2.39 -0.02 3.62 16 12 C -0.14 -6.10 6.39 31.99 0.20 -5.89 16 13 C 0.16 8.83 5.89 86.86 0.51 9.34 16 14 N -0.62 -35.83 3.39 -691.98 -2.35 -38.18 16 15 C -0.24 -14.82 10.27 84.03 0.86 -13.95 16 16 H 0.07 4.39 7.83 -2.91 -0.02 4.37 16 17 C -0.07 -4.20 5.49 84.86 0.47 -3.74 16 18 N -0.95 -60.64 10.09 21.65 0.22 -60.42 16 19 Si 0.98 49.09 29.55 68.60 2.03 51.12 16 20 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.28 -13.81 7.11 99.48 0.71 -13.11 16 22 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 23 C 0.13 6.41 6.49 86.73 0.56 6.98 16 24 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 1.05 7.48 -2.38 -0.02 1.03 16 29 H 0.11 1.35 6.63 -2.39 -0.02 1.33 16 30 H 0.09 1.41 7.94 -2.39 -0.02 1.40 16 31 H 0.15 2.33 6.51 -2.39 -0.02 2.31 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.07 2.12 7.67 -2.38 -0.02 2.10 16 36 H 0.08 3.03 8.14 -2.39 -0.02 3.02 16 37 H 0.06 2.86 5.80 -2.39 -0.01 2.85 16 38 H 0.07 4.12 5.87 -2.39 -0.01 4.11 16 39 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 40 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 41 H 0.01 0.64 6.30 -2.38 -0.02 0.62 16 42 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -80.54 329.82 4.08 -76.46 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.98 Total: 10.75 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 5.24 Total: 6.33 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -4.14 Total: -118.19 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.04 Total: -26.46 kcal Atomic # 14 Polarization: 49.09 SS G_CDS: 2.03 Total: 51.12 kcal Total: -80.54 4.08 -76.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753311863.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.557 kcal (2) G-P(sol) polarization free energy of solvation -80.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds