Wall clock time and date at job start Mon Mar 30 2020 00:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99653 * 2 1 4 4 C 1.53005 * 109.47102 * 124.99629 * 3 2 1 5 5 C 1.50698 * 109.47045 * 179.97438 * 4 3 2 6 6 O 1.21290 * 119.99834 * 359.97438 * 5 4 3 7 7 N 1.34772 * 120.00296 * 179.97438 * 5 4 3 8 8 C 1.46494 * 120.00318 * 185.19000 * 7 5 4 9 9 C 1.53005 * 109.47145 * 183.95049 * 8 7 5 10 10 C 1.52999 * 109.46969 * 63.95184 * 8 7 5 11 11 N 1.46500 * 109.47030 * 59.99927 * 10 8 7 12 12 C 1.36937 * 120.00138 * 180.02562 * 11 10 8 13 13 H 1.08003 * 120.00269 * 359.97438 * 12 11 10 14 14 C 1.38808 * 120.00284 * 180.02562 * 12 11 10 15 15 N 1.31617 * 119.99832 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00092 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47249 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47336 * 119.99621 * 16 14 12 19 19 H 1.48503 * 109.46889 * 239.99326 * 16 14 12 20 20 C 1.52998 * 109.47600 * 303.95445 * 8 7 5 21 21 C 1.53001 * 117.51697 * 228.44987 * 20 8 7 22 22 C 1.53005 * 117.49462 * 297.07847 * 20 8 7 23 23 H 1.08002 * 120.00005 * 180.02562 * 1 2 3 24 24 H 1.07998 * 120.00334 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.00334 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.47626 * 4.99185 * 3 2 1 27 27 H 1.09006 * 109.46762 * 244.99147 * 3 2 1 28 28 H 1.09002 * 109.47185 * 60.00061 * 4 3 2 29 29 H 1.08998 * 109.46973 * 299.99726 * 4 3 2 30 30 H 0.97001 * 119.99979 * 5.20019 * 7 5 4 31 31 H 1.09003 * 109.46706 * 180.02562 * 9 8 7 32 32 H 1.09000 * 109.47099 * 299.99868 * 9 8 7 33 33 H 1.08993 * 109.46980 * 60.00226 * 9 8 7 34 34 H 1.09004 * 109.47388 * 179.97438 * 10 8 7 35 35 H 1.08993 * 109.47268 * 299.99898 * 10 8 7 36 36 H 0.96996 * 120.00435 * 359.97438 * 11 10 8 37 37 H 0.97008 * 119.99757 * 180.02562 * 15 14 12 38 38 H 1.08999 * 115.55380 * 82.74298 * 20 8 7 39 39 H 1.09002 * 117.50163 * 214.96480 * 21 20 8 40 40 H 1.08997 * 117.50077 * 359.97438 * 21 20 8 41 41 H 1.08998 * 117.49808 * 359.97048 * 22 20 8 42 42 H 1.08998 * 117.49901 * 144.97755 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1817 5 6 3.7887 2.6381 1.1813 6 8 3.5708 3.4641 0.3203 7 7 4.7051 2.8873 2.1377 8 6 5.3555 4.1982 2.2052 9 6 6.4148 4.1856 3.3092 10 6 4.3095 5.2711 2.5142 11 7 3.6718 4.9756 3.7996 12 6 2.6959 5.8038 4.2863 13 1 2.3967 6.6753 3.7228 14 6 2.0920 5.5241 5.5044 15 7 2.4570 4.4625 6.1914 16 14 0.7614 6.6544 6.1686 17 1 0.5367 7.7692 5.2136 18 1 -0.4988 5.8879 6.3407 19 1 1.1887 7.2050 7.4799 20 6 6.0215 4.5069 0.8628 21 6 7.4702 4.9984 0.8890 22 6 7.1514 3.5821 0.4056 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3585 2.1317 0.0894 27 1 2.6213 1.4026 -0.9314 28 1 3.7399 0.5067 1.0922 29 1 2.4770 1.2358 2.1130 30 1 4.9341 2.1986 2.7812 31 1 6.8984 5.1612 3.3597 32 1 5.9403 3.9658 4.2656 33 1 7.1599 3.4213 3.0891 34 1 4.7935 6.2465 2.5649 35 1 3.5549 5.2801 1.7278 36 1 3.9402 4.1928 4.3056 37 1 2.0347 4.2668 7.0426 38 1 5.3648 4.9166 0.0954 39 1 7.7667 5.7314 0.1387 40 1 7.9490 5.1022 1.8626 41 1 7.4206 2.7541 1.0614 42 1 7.2379 3.3832 -0.6626 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753515094.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:31 Heat of formation + Delta-G solvation = 12.552554 kcal Electronic energy + Delta-G solvation = -20992.315877 eV Core-core repulsion = 17973.875179 eV Total energy + Delta-G solvation = -3018.440698 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.00254 -37.73207 -35.27042 -34.84405 -33.35445 -31.43394 -30.35100 -29.13157 -26.15623 -24.48040 -23.60541 -22.21700 -21.35096 -20.24692 -19.71285 -18.61533 -17.23353 -16.68251 -15.95789 -15.58116 -15.12787 -14.63368 -14.38356 -14.12072 -13.72160 -13.36496 -13.09959 -12.83396 -12.45460 -12.30444 -12.05061 -11.84474 -11.81142 -11.23474 -11.02916 -10.96132 -10.90530 -10.85792 -10.80669 -10.57265 -10.20723 -10.09133 -9.85012 -9.62446 -9.39714 -9.09795 -8.78893 -8.48149 -6.83943 -5.73388 -2.99434 2.29122 3.16231 3.45444 3.51600 3.53050 3.54383 4.18566 4.60974 4.81605 4.93402 5.04078 5.14251 5.22145 5.28458 5.36524 5.41672 5.49431 5.52868 5.63441 5.71371 5.74219 5.79156 5.91095 5.97508 6.05298 6.10595 6.25451 6.27509 6.28935 6.33069 6.56959 6.61809 6.65143 6.65981 6.81335 6.94139 7.16228 7.75997 8.01936 8.46543 8.75806 9.58027 10.16104 10.52015 11.49949 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.011157 B = 0.007266 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.092589 B = 3852.620173 C = 5832.153267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C -0.077 4.077 4 C -0.137 4.137 5 C 0.523 3.477 6 O -0.540 6.540 7 N -0.712 5.712 8 C 0.200 3.800 9 C -0.154 4.154 10 C 0.147 3.853 11 N -0.726 5.726 12 C -0.230 4.230 13 H 0.069 0.931 14 C -0.016 4.016 15 N -0.936 5.936 16 Si 0.904 3.096 17 H -0.281 1.281 18 H -0.293 1.293 19 H -0.292 1.292 20 C -0.139 4.139 21 C -0.185 4.185 22 C -0.175 4.175 23 H 0.094 0.906 24 H 0.097 0.903 25 H 0.106 0.894 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.396 0.604 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.024 0.976 35 H 0.038 0.962 36 H 0.382 0.618 37 H 0.253 0.747 38 H 0.115 0.885 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.971 -8.403 -10.667 15.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.171 4.171 3 C -0.115 4.115 4 C -0.177 4.177 5 C 0.310 3.690 6 O -0.417 6.417 7 N -0.363 5.363 8 C 0.114 3.886 9 C -0.212 4.212 10 C 0.018 3.982 11 N -0.371 5.371 12 C -0.361 4.361 13 H 0.087 0.913 14 C -0.212 4.212 15 N -0.586 5.586 16 Si 0.736 3.264 17 H -0.206 1.206 18 H -0.220 1.220 19 H -0.220 1.220 20 C -0.159 4.159 21 C -0.222 4.222 22 C -0.212 4.212 23 H 0.113 0.887 24 H 0.116 0.884 25 H 0.124 0.876 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.229 0.771 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.056 0.944 36 H 0.216 0.784 37 H 0.062 0.938 38 H 0.133 0.867 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.107 0.893 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.682 -7.639 -11.262 15.160 hybrid contribution -0.625 -0.063 1.021 1.199 sum 6.057 -7.703 -10.241 14.174 Atomic orbital electron populations 1.23873 0.96067 1.01801 1.01457 1.22982 0.96084 0.98377 0.99651 1.20473 0.97919 0.95248 0.97828 1.21608 0.98871 0.95874 1.01327 1.20404 0.79072 0.88626 0.80930 1.90627 1.65436 1.48260 1.37367 1.45976 1.42201 1.15210 1.32875 1.19995 0.92451 0.83602 0.92510 1.22123 0.97746 1.02309 0.98988 1.20997 0.93391 0.93894 0.89883 1.42268 1.44581 1.30929 1.19302 1.19289 1.11304 1.04198 1.01305 0.91318 1.24674 1.00508 0.98281 0.97697 1.69655 1.45668 1.27874 1.15412 0.86138 0.81698 0.79950 0.78601 1.20625 1.21990 1.21977 1.22593 0.90378 1.03739 0.99173 1.23141 0.98966 0.97150 1.02952 1.22779 1.04074 0.93602 1.00748 0.88741 0.88434 0.87602 0.90608 0.90563 0.89574 0.88611 0.77054 0.90813 0.90690 0.92927 0.95800 0.94435 0.78427 0.93762 0.86724 0.89279 0.88240 0.89296 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.15 14.32 29.02 0.42 -1.74 16 2 C -0.15 -1.72 9.52 -36.02 -0.34 -2.06 16 3 C -0.08 -1.01 4.95 -27.88 -0.14 -1.15 16 4 C -0.14 -1.80 5.68 -27.88 -0.16 -1.96 16 5 C 0.52 8.65 7.24 -10.99 -0.08 8.57 16 6 O -0.54 -10.57 12.80 5.55 0.07 -10.50 16 7 N -0.71 -11.05 4.71 -47.61 -0.22 -11.28 16 8 C 0.20 3.32 0.54 -131.82 -0.07 3.25 16 9 C -0.15 -2.29 7.04 37.16 0.26 -2.03 16 10 C 0.15 3.15 5.02 -4.04 -0.02 3.13 16 11 N -0.73 -18.32 5.17 -59.91 -0.31 -18.63 16 12 C -0.23 -6.54 9.99 -15.06 -0.15 -6.69 16 13 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 14 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 15 N -0.94 -28.04 13.06 55.49 0.72 -27.32 16 16 Si 0.90 22.82 29.55 -169.99 -5.02 17.80 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 20 C -0.14 -2.11 4.05 -90.62 -0.37 -2.48 16 21 C -0.18 -2.31 9.62 -26.73 -0.26 -2.56 16 22 C -0.17 -2.19 9.81 -26.73 -0.26 -2.45 16 23 H 0.09 0.88 8.06 -52.49 -0.42 0.46 16 24 H 0.10 1.12 7.84 -52.49 -0.41 0.71 16 25 H 0.11 1.00 8.06 -52.49 -0.42 0.58 16 26 H 0.08 1.15 7.75 -51.93 -0.40 0.75 16 27 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 28 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.40 5.30 8.48 -40.82 -0.35 4.96 16 31 H 0.07 1.08 6.84 -51.93 -0.36 0.72 16 32 H 0.07 1.27 6.86 -51.93 -0.36 0.92 16 33 H 0.05 0.65 7.01 -51.93 -0.36 0.28 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.04 0.90 6.64 -51.93 -0.35 0.56 16 36 H 0.38 9.80 6.35 -40.82 -0.26 9.54 16 37 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.11 2.00 7.18 -51.93 -0.37 1.63 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.10 1.18 5.87 -51.93 -0.31 0.87 16 41 H 0.09 1.05 7.42 -51.93 -0.39 0.66 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 339.20 15.07 5.11 5.11 Total: -1.00 -31.94 339.20 -7.74 -39.68 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -6.83 Total: 13.89 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -1.27 Total: -8.75 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.19 Total: -57.23 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.07 Total: -10.50 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.94 -7.74 -39.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753515094.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.235 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds