Wall clock time and date at job start Mon Mar 30 2020 00:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99653 * 2 1 4 4 C 1.53005 * 109.47102 * 124.99629 * 3 2 1 5 5 C 1.50698 * 109.47045 * 179.97438 * 4 3 2 6 6 O 1.21290 * 119.99834 * 359.97438 * 5 4 3 7 7 N 1.34772 * 120.00296 * 179.97438 * 5 4 3 8 8 C 1.46494 * 120.00318 * 185.19000 * 7 5 4 9 9 C 1.53005 * 109.47145 * 183.95049 * 8 7 5 10 10 C 1.52999 * 109.46969 * 63.95184 * 8 7 5 11 11 N 1.46500 * 109.47030 * 59.99927 * 10 8 7 12 12 C 1.36937 * 120.00138 * 180.02562 * 11 10 8 13 13 H 1.08003 * 120.00269 * 359.97438 * 12 11 10 14 14 C 1.38808 * 120.00284 * 180.02562 * 12 11 10 15 15 N 1.31617 * 119.99832 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00092 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47249 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47336 * 119.99621 * 16 14 12 19 19 H 1.48503 * 109.46889 * 239.99326 * 16 14 12 20 20 C 1.52998 * 109.47600 * 303.95445 * 8 7 5 21 21 C 1.53001 * 117.51697 * 228.44987 * 20 8 7 22 22 C 1.53005 * 117.49462 * 297.07847 * 20 8 7 23 23 H 1.08002 * 120.00005 * 180.02562 * 1 2 3 24 24 H 1.07998 * 120.00334 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.00334 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.47626 * 4.99185 * 3 2 1 27 27 H 1.09006 * 109.46762 * 244.99147 * 3 2 1 28 28 H 1.09002 * 109.47185 * 60.00061 * 4 3 2 29 29 H 1.08998 * 109.46973 * 299.99726 * 4 3 2 30 30 H 0.97001 * 119.99979 * 5.20019 * 7 5 4 31 31 H 1.09003 * 109.46706 * 180.02562 * 9 8 7 32 32 H 1.09000 * 109.47099 * 299.99868 * 9 8 7 33 33 H 1.08993 * 109.46980 * 60.00226 * 9 8 7 34 34 H 1.09004 * 109.47388 * 179.97438 * 10 8 7 35 35 H 1.08993 * 109.47268 * 299.99898 * 10 8 7 36 36 H 0.96996 * 120.00435 * 359.97438 * 11 10 8 37 37 H 0.97008 * 119.99757 * 180.02562 * 15 14 12 38 38 H 1.08999 * 115.55380 * 82.74298 * 20 8 7 39 39 H 1.09002 * 117.50163 * 214.96480 * 21 20 8 40 40 H 1.08997 * 117.50077 * 359.97438 * 21 20 8 41 41 H 1.08998 * 117.49808 * 359.97048 * 22 20 8 42 42 H 1.08998 * 117.49901 * 144.97755 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1817 5 6 3.7887 2.6381 1.1813 6 8 3.5708 3.4641 0.3203 7 7 4.7051 2.8873 2.1377 8 6 5.3555 4.1982 2.2052 9 6 6.4148 4.1856 3.3092 10 6 4.3095 5.2711 2.5142 11 7 3.6718 4.9756 3.7996 12 6 2.6959 5.8038 4.2863 13 1 2.3967 6.6753 3.7228 14 6 2.0920 5.5241 5.5044 15 7 2.4570 4.4625 6.1914 16 14 0.7614 6.6544 6.1686 17 1 0.5367 7.7692 5.2136 18 1 -0.4988 5.8879 6.3407 19 1 1.1887 7.2050 7.4799 20 6 6.0215 4.5069 0.8628 21 6 7.4702 4.9984 0.8890 22 6 7.1514 3.5821 0.4056 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3585 2.1317 0.0894 27 1 2.6213 1.4026 -0.9314 28 1 3.7399 0.5067 1.0922 29 1 2.4770 1.2358 2.1130 30 1 4.9341 2.1986 2.7812 31 1 6.8984 5.1612 3.3597 32 1 5.9403 3.9658 4.2656 33 1 7.1599 3.4213 3.0891 34 1 4.7935 6.2465 2.5649 35 1 3.5549 5.2801 1.7278 36 1 3.9402 4.1928 4.3056 37 1 2.0347 4.2668 7.0426 38 1 5.3648 4.9166 0.0954 39 1 7.7667 5.7314 0.1387 40 1 7.9490 5.1022 1.8626 41 1 7.4206 2.7541 1.0614 42 1 7.2379 3.3832 -0.6626 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753515094.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:30 Heat of formation + Delta-G solvation = -7.810635 kcal Electronic energy + Delta-G solvation = -20993.198891 eV Core-core repulsion = 17973.875179 eV Total energy + Delta-G solvation = -3019.323712 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.31455 -38.97908 -36.61396 -36.18348 -34.97357 -33.15817 -31.69904 -30.52661 -27.76382 -25.90897 -25.17732 -23.29554 -22.87357 -21.47145 -20.66280 -20.01042 -19.21979 -17.93168 -17.22789 -16.82977 -16.60826 -16.26597 -15.65935 -15.47258 -15.06700 -15.00513 -14.65880 -14.32467 -13.65807 -13.58487 -13.41771 -13.27915 -12.97800 -12.94370 -12.82350 -12.42106 -12.14145 -12.08848 -11.97962 -11.96780 -11.88577 -11.71842 -11.32773 -11.02576 -10.97251 -10.47632 -10.17223 -9.84292 -8.96677 -7.96471 -5.22643 1.40181 1.44334 1.44898 1.54887 1.85936 2.33359 2.54391 3.10143 3.36780 3.57130 3.85871 3.96352 4.00765 4.08493 4.18665 4.24215 4.28020 4.36259 4.45215 4.47084 4.55173 4.70120 4.79352 4.89673 4.94498 4.98469 5.00678 5.04125 5.08900 5.15675 5.24036 5.31007 5.32463 5.44151 5.46785 5.73070 5.77235 5.93456 6.26674 6.77702 7.34235 7.49213 8.07750 8.37555 9.26504 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.011157 B = 0.007266 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.092589 B = 3852.620173 C = 5832.153267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C -0.074 4.074 4 C -0.129 4.129 5 C 0.512 3.488 6 O -0.577 6.577 7 N -0.707 5.707 8 C 0.208 3.792 9 C -0.145 4.145 10 C 0.149 3.851 11 N -0.728 5.728 12 C -0.245 4.245 13 H 0.061 0.939 14 C -0.067 4.067 15 N -0.961 5.961 16 Si 0.967 3.033 17 H -0.275 1.275 18 H -0.292 1.292 19 H -0.288 1.288 20 C -0.165 4.165 21 C -0.170 4.170 22 C -0.155 4.155 23 H 0.116 0.884 24 H 0.083 0.917 25 H 0.133 0.867 26 H 0.043 0.957 27 H 0.074 0.926 28 H 0.125 0.875 29 H 0.090 0.910 30 H 0.408 0.592 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.018 0.982 35 H 0.006 0.994 36 H 0.379 0.621 37 H 0.252 0.748 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.244 -9.746 -10.649 16.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.171 4.171 3 C -0.112 4.112 4 C -0.168 4.168 5 C 0.300 3.700 6 O -0.456 6.456 7 N -0.358 5.358 8 C 0.122 3.878 9 C -0.202 4.202 10 C 0.022 3.978 11 N -0.372 5.372 12 C -0.377 4.377 13 H 0.079 0.921 14 C -0.259 4.259 15 N -0.612 5.612 16 Si 0.796 3.204 17 H -0.200 1.200 18 H -0.219 1.219 19 H -0.215 1.215 20 C -0.184 4.184 21 C -0.208 4.208 22 C -0.192 4.192 23 H 0.134 0.866 24 H 0.102 0.898 25 H 0.151 0.849 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.143 0.857 29 H 0.109 0.891 30 H 0.243 0.757 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.036 0.964 35 H 0.024 0.976 36 H 0.213 0.787 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.118 0.882 40 H 0.130 0.870 41 H 0.122 0.878 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.973 -8.990 -11.248 16.459 hybrid contribution -1.038 0.401 0.959 1.469 sum 6.935 -8.588 -10.289 15.090 Atomic orbital electron populations 1.24036 0.96296 1.02266 1.01154 1.23036 0.96105 0.98168 0.99834 1.20402 0.97456 0.95498 0.97847 1.21613 0.99138 0.95176 1.00897 1.21082 0.78996 0.89439 0.80439 1.90616 1.66454 1.49687 1.38882 1.45961 1.41938 1.15077 1.32790 1.19789 0.91374 0.82473 0.94150 1.22054 0.97620 1.03715 0.96853 1.21014 0.93778 0.95817 0.87234 1.42312 1.44190 1.30340 1.20332 1.19554 1.12119 1.04456 1.01578 0.92085 1.25395 1.02676 0.99858 0.98005 1.69775 1.46670 1.29140 1.15596 0.85175 0.78953 0.78316 0.77933 1.19974 1.21925 1.21494 1.22304 0.91351 1.07066 0.97703 1.23256 0.96071 0.97546 1.03884 1.22858 1.00926 0.93920 1.01512 0.86554 0.89814 0.84901 0.93816 0.90744 0.85713 0.89145 0.75651 0.90466 0.92960 0.89452 0.96387 0.97574 0.78735 0.93923 0.89809 0.88242 0.87049 0.87772 0.88890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.24 14.32 67.79 0.97 -3.27 16 2 C -0.15 -3.22 9.52 25.65 0.24 -2.97 16 3 C -0.07 -1.95 4.95 29.85 0.15 -1.80 16 4 C -0.13 -3.27 5.68 29.85 0.17 -3.10 16 5 C 0.51 17.06 7.24 87.66 0.63 17.69 16 6 O -0.58 -23.51 12.80 -3.06 -0.04 -23.55 16 7 N -0.71 -21.58 4.71 -422.93 -1.99 -23.57 16 8 C 0.21 6.86 0.54 3.61 0.00 6.86 16 9 C -0.15 -4.08 7.04 71.98 0.51 -3.57 16 10 C 0.15 6.63 5.02 86.38 0.43 7.07 16 11 N -0.73 -37.62 5.17 -343.46 -1.78 -39.39 16 12 C -0.25 -14.24 9.99 84.03 0.84 -13.40 16 13 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 14 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 15 N -0.96 -57.82 13.06 21.65 0.28 -57.54 16 16 Si 0.97 47.20 29.55 68.60 2.03 49.23 16 17 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 18 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 19 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 20 C -0.16 -4.90 4.05 -10.79 -0.04 -4.94 16 21 C -0.17 -3.85 9.62 30.60 0.29 -3.56 16 22 C -0.16 -3.47 9.81 30.60 0.30 -3.17 16 23 H 0.12 1.93 8.06 -2.91 -0.02 1.91 16 24 H 0.08 1.97 7.84 -2.91 -0.02 1.94 16 25 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 26 H 0.04 1.40 7.75 -2.39 -0.02 1.38 16 27 H 0.07 1.96 8.10 -2.38 -0.02 1.94 16 28 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.41 10.34 8.48 -92.71 -0.79 9.55 16 31 H 0.08 2.11 6.84 -2.39 -0.02 2.10 16 32 H 0.05 1.73 6.86 -2.39 -0.02 1.71 16 33 H 0.09 1.85 7.01 -2.39 -0.02 1.83 16 34 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.01 0.32 6.64 -2.39 -0.02 0.30 16 36 H 0.38 19.79 6.35 -92.71 -0.59 19.20 16 37 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 38 H 0.08 3.04 7.18 -2.39 -0.02 3.02 16 39 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.11 2.28 5.87 -2.39 -0.01 2.26 16 41 H 0.10 2.04 7.42 -2.39 -0.02 2.02 16 42 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -70.33 339.20 3.10 -67.23 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: -0.37 Total: 39.18 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: 4.97 Total: -11.58 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -3.49 Total: -120.50 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.04 Total: -23.55 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -70.33 3.10 -67.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753515094.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.414 kcal (2) G-P(sol) polarization free energy of solvation -70.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds