Wall clock time and date at job start Mon Mar 30 2020 00:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 120.00061 * 2 1 4 4 C 1.53001 * 109.46982 * 124.99698 * 3 2 1 5 5 C 1.50699 * 109.46982 * 179.97438 * 4 3 2 6 6 O 1.21286 * 120.00153 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00297 * 179.97438 * 5 4 3 8 8 C 1.46497 * 120.00252 * 185.12397 * 7 5 4 9 9 C 1.53007 * 109.47256 * 298.24036 * 8 7 5 10 10 C 1.52998 * 109.47084 * 58.24140 * 8 7 5 11 11 N 1.46494 * 109.47223 * 59.99956 * 10 8 7 12 12 C 1.36938 * 120.00039 * 179.97438 * 11 10 8 13 13 H 1.07996 * 119.99936 * 0.02562 * 12 11 10 14 14 C 1.38819 * 119.99762 * 179.97438 * 12 11 10 15 15 N 1.31617 * 120.00137 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99756 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47045 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46897 * 120.00192 * 16 14 12 19 19 H 1.48499 * 109.47319 * 240.00024 * 16 14 12 20 20 C 1.52995 * 109.47073 * 178.24230 * 8 7 5 21 21 C 1.53000 * 117.49829 * 132.09347 * 20 8 7 22 22 C 1.52998 * 117.50270 * 63.43472 * 20 8 7 23 23 H 1.07994 * 119.99967 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.00083 * 179.97438 * 1 2 3 25 25 H 1.08003 * 120.00060 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.46849 * 4.99624 * 3 2 1 27 27 H 1.08994 * 109.47258 * 244.99838 * 3 2 1 28 28 H 1.08993 * 109.47089 * 60.00530 * 4 3 2 29 29 H 1.09000 * 109.47063 * 299.99712 * 4 3 2 30 30 H 0.96996 * 119.99515 * 5.12907 * 7 5 4 31 31 H 1.09001 * 109.46988 * 300.00216 * 9 8 7 32 32 H 1.08997 * 109.47303 * 179.97438 * 9 8 7 33 33 H 1.09004 * 109.46816 * 60.00060 * 9 8 7 34 34 H 1.08997 * 109.47250 * 180.02562 * 10 8 7 35 35 H 1.09004 * 109.47258 * 300.00105 * 10 8 7 36 36 H 0.97002 * 120.00037 * 359.97438 * 11 10 8 37 37 H 0.97000 * 119.99845 * 180.02562 * 15 14 12 38 38 H 1.09001 * 115.54848 * 277.76138 * 20 8 7 39 39 H 1.08996 * 117.50453 * 0.02562 * 21 20 8 40 40 H 1.09000 * 117.49801 * 145.02120 * 21 20 8 41 41 H 1.09000 * 117.50110 * 214.98522 * 22 20 8 42 42 H 1.09007 * 117.49577 * 359.97438 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 6 3.7890 2.6379 1.1813 6 8 3.5712 3.4639 0.3204 7 7 4.7054 2.8870 2.1377 8 6 5.3570 4.1974 2.2043 9 6 6.1423 4.4427 0.9143 10 6 4.2957 5.2868 2.3703 11 7 3.5438 5.0520 3.6054 12 6 2.5354 5.9054 3.9659 13 1 2.2941 6.7514 3.3395 14 6 1.8226 5.6825 5.1361 15 7 2.1163 4.6512 5.8993 16 14 0.4474 6.8471 5.6282 17 1 0.3178 7.9188 4.6085 18 1 -0.8294 6.0945 5.7198 19 1 0.7604 7.4533 6.9472 20 6 6.3136 4.2311 3.3979 21 6 7.7276 4.7625 3.1551 22 6 7.5002 3.2656 3.3798 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8501 -0.9353 0.0004 26 1 1.3586 2.1316 0.0895 27 1 2.6213 1.4026 -0.9313 28 1 3.7400 0.5066 1.0921 29 1 2.4772 1.2356 2.1130 30 1 4.9335 2.1986 2.7818 31 1 6.8984 3.6665 0.7961 32 1 6.6268 5.4178 0.9637 33 1 5.4608 4.4186 0.0639 34 1 4.7804 6.2618 2.4194 35 1 3.6141 5.2627 1.5199 36 1 3.7602 4.2919 4.1679 37 1 1.6179 4.4953 6.7168 38 1 5.8540 4.4458 4.3627 39 1 7.9764 5.0884 2.1452 40 1 8.1986 5.3263 3.9604 41 1 7.8216 2.8451 4.3328 42 1 7.5992 2.6059 2.5177 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753515095.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:32 Heat of formation + Delta-G solvation = -7.456900 kcal Electronic energy + Delta-G solvation = -21008.564785 eV Core-core repulsion = 17989.256412 eV Total energy + Delta-G solvation = -3019.308373 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.34766 -39.11404 -36.46488 -36.15877 -34.92421 -33.15498 -31.88937 -30.60900 -27.58902 -25.84667 -24.67073 -23.96891 -23.11691 -21.05436 -20.66471 -20.08573 -19.22631 -18.19276 -17.02121 -16.73363 -16.67965 -16.22545 -15.68501 -15.54414 -15.14959 -14.96876 -14.51146 -14.19412 -13.72732 -13.70764 -13.42925 -13.24542 -13.08657 -12.91837 -12.82987 -12.45160 -12.20805 -12.05554 -11.98699 -11.95217 -11.87019 -11.76090 -11.22500 -11.06991 -10.91359 -10.49582 -10.17065 -9.86036 -8.94918 -7.96433 -5.22296 1.40359 1.43142 1.43754 1.53871 1.81922 2.31450 2.54131 3.06523 3.36234 3.64420 3.80991 3.93663 3.97327 4.00502 4.18449 4.24291 4.26452 4.39735 4.47031 4.48590 4.64062 4.76055 4.79973 4.88569 4.92558 4.97806 5.01609 5.03745 5.09127 5.13758 5.24032 5.31825 5.33705 5.44892 5.49345 5.73443 5.77258 5.94055 6.26455 6.77434 7.33760 7.46300 8.08628 8.37663 9.26583 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.010360 B = 0.007781 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.045836 B = 3597.516052 C = 5638.049487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C -0.075 4.075 4 C -0.128 4.128 5 C 0.511 3.489 6 O -0.577 6.577 7 N -0.706 5.706 8 C 0.210 3.790 9 C -0.152 4.152 10 C 0.145 3.855 11 N -0.728 5.728 12 C -0.243 4.243 13 H 0.061 0.939 14 C -0.068 4.068 15 N -0.962 5.962 16 Si 0.967 3.033 17 H -0.274 1.274 18 H -0.292 1.292 19 H -0.289 1.289 20 C -0.176 4.176 21 C -0.165 4.165 22 C -0.153 4.153 23 H 0.082 0.918 24 H 0.117 0.883 25 H 0.134 0.866 26 H 0.042 0.958 27 H 0.076 0.924 28 H 0.127 0.873 29 H 0.090 0.910 30 H 0.408 0.592 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.016 0.984 35 H 0.017 0.983 36 H 0.378 0.622 37 H 0.251 0.749 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.280 -10.459 -9.048 16.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.171 4.171 3 C -0.113 4.113 4 C -0.168 4.168 5 C 0.299 3.701 6 O -0.457 6.457 7 N -0.357 5.357 8 C 0.124 3.876 9 C -0.210 4.210 10 C 0.017 3.983 11 N -0.371 5.371 12 C -0.376 4.376 13 H 0.079 0.921 14 C -0.261 4.261 15 N -0.613 5.613 16 Si 0.797 3.203 17 H -0.199 1.199 18 H -0.219 1.219 19 H -0.215 1.215 20 C -0.195 4.195 21 C -0.203 4.203 22 C -0.190 4.190 23 H 0.101 0.899 24 H 0.135 0.865 25 H 0.152 0.848 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.145 0.855 29 H 0.108 0.892 30 H 0.243 0.757 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.033 0.967 35 H 0.035 0.965 36 H 0.211 0.789 37 H 0.060 0.940 38 H 0.103 0.897 39 H 0.130 0.870 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.014 -9.701 -9.676 16.401 hybrid contribution -1.059 0.477 1.132 1.622 sum 7.955 -9.224 -8.544 14.879 Atomic orbital electron populations 1.24038 0.96335 1.02237 1.01205 1.23039 0.96077 0.98170 0.99785 1.20409 0.97481 0.95510 0.97882 1.21613 0.99136 0.95112 1.00915 1.21125 0.78950 0.89535 0.80482 1.90600 1.66457 1.49544 1.39101 1.45933 1.41938 1.15126 1.32699 1.19798 0.90630 0.82471 0.94723 1.22191 0.99888 1.02569 0.96356 1.21083 0.92918 0.95686 0.88610 1.42289 1.39078 1.31874 1.23836 1.19569 1.08996 1.05171 1.03815 0.92059 1.25408 1.02546 1.00229 0.97925 1.69784 1.44631 1.31296 1.15556 0.85167 0.79117 0.78407 0.77658 1.19901 1.21944 1.21544 1.22254 0.90107 1.08916 0.98193 1.23183 0.95863 0.97246 1.03964 1.23031 0.99345 0.92586 1.04068 0.89912 0.86524 0.84799 0.93905 0.90597 0.85545 0.89193 0.75663 0.90402 0.90881 0.92442 0.96665 0.96461 0.78887 0.93998 0.89727 0.87009 0.88414 0.87790 0.87272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.33 14.32 67.78 0.97 -3.36 16 2 C -0.15 -3.23 9.52 25.64 0.24 -2.99 16 3 C -0.08 -1.99 4.95 29.85 0.15 -1.84 16 4 C -0.13 -3.28 5.68 29.85 0.17 -3.11 16 5 C 0.51 17.12 7.23 87.66 0.63 17.76 16 6 O -0.58 -23.63 12.22 -3.05 -0.04 -23.66 16 7 N -0.71 -21.76 4.73 -422.92 -2.00 -23.76 16 8 C 0.21 6.97 0.54 3.60 0.00 6.97 16 9 C -0.15 -4.32 7.06 71.98 0.51 -3.82 16 10 C 0.14 6.50 4.94 86.38 0.43 6.92 16 11 N -0.73 -38.29 5.03 -343.46 -1.73 -40.02 16 12 C -0.24 -14.34 9.99 84.03 0.84 -13.50 16 13 H 0.06 3.62 7.83 -2.91 -0.02 3.59 16 14 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 15 N -0.96 -58.71 13.06 21.65 0.28 -58.42 16 16 Si 0.97 47.76 29.55 68.60 2.03 49.79 16 17 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 18 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 19 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 20 C -0.18 -5.25 4.86 -10.80 -0.05 -5.30 16 21 C -0.17 -3.80 9.63 30.62 0.29 -3.51 16 22 C -0.15 -3.21 9.72 30.62 0.30 -2.92 16 23 H 0.08 2.00 7.84 -2.91 -0.02 1.97 16 24 H 0.12 1.97 8.06 -2.91 -0.02 1.95 16 25 H 0.13 2.11 8.06 -2.91 -0.02 2.08 16 26 H 0.04 1.40 7.75 -2.38 -0.02 1.38 16 27 H 0.08 1.99 8.10 -2.39 -0.02 1.97 16 28 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.41 10.57 8.38 -92.71 -0.78 9.79 16 31 H 0.08 1.79 7.00 -2.39 -0.02 1.78 16 32 H 0.07 1.91 6.81 -2.39 -0.02 1.90 16 33 H 0.06 1.92 6.13 -2.39 -0.01 1.91 16 34 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.02 0.88 6.22 -2.39 -0.01 0.87 16 36 H 0.38 20.31 6.63 -92.71 -0.61 19.70 16 37 H 0.25 14.81 8.31 -92.71 -0.77 14.03 16 38 H 0.08 3.20 7.09 -2.39 -0.02 3.18 16 39 H 0.11 2.30 5.88 -2.39 -0.01 2.28 16 40 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.11 1.94 7.39 -2.38 -0.02 1.93 16 Total: -1.00 -71.03 338.03 3.11 -67.92 By element: Atomic # 1 Polarization: 40.80 SS G_CDS: -0.38 Total: 40.42 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 4.95 Total: -12.25 kcal Atomic # 7 Polarization: -118.76 SS G_CDS: -3.44 Total: -122.21 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.04 Total: -23.66 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.79 kcal Total: -71.03 3.11 -67.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753515095.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.460 kcal (2) G-P(sol) polarization free energy of solvation -71.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds