Wall clock time and date at job start Mon Mar 30 2020 00:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.52241 * 2 1 4 4 C 1.53115 * 109.52460 * 120.12731 * 2 1 3 5 5 C 1.53042 * 109.27962 * 177.62115 * 4 2 1 6 6 N 1.46842 * 109.52225 * 300.82177 * 5 4 2 7 7 C 1.46905 * 110.99493 * 185.83572 * 6 5 4 8 8 C 1.53003 * 109.46734 * 74.77757 * 7 6 5 9 9 C 1.50697 * 115.55086 * 54.29719 * 8 7 6 10 10 H 1.08003 * 120.00240 * 267.84523 * 9 8 7 11 11 C 1.37876 * 119.99995 * 87.85472 * 9 8 7 12 12 N 1.31513 * 120.00126 * 352.34465 * 11 9 8 13 13 Si 1.86798 * 120.00135 * 172.35162 * 11 9 8 14 14 H 1.48499 * 109.47324 * 59.99685 * 13 11 9 15 15 H 1.48498 * 109.47339 * 299.99713 * 13 11 9 16 16 H 1.48501 * 109.47148 * 179.97438 * 13 11 9 17 17 C 1.52997 * 117.49737 * 199.96778 * 8 7 6 18 18 C 1.53001 * 117.49544 * 268.62579 * 8 7 6 19 19 C 1.46843 * 111.19837 * 61.74565 * 6 5 4 20 20 H 1.09005 * 109.46217 * 58.26697 * 19 6 5 21 21 C 1.50701 * 109.46608 * 178.23657 * 19 6 5 22 22 N 1.34772 * 120.00430 * 208.21699 * 21 19 6 23 23 O 1.21287 * 119.99494 * 28.21665 * 21 19 6 24 24 C 1.53036 * 109.52217 * 298.25460 * 19 6 5 25 25 H 1.08998 * 109.47246 * 299.87286 * 1 2 3 26 26 H 1.09001 * 109.47264 * 59.86746 * 1 2 3 27 27 H 1.08991 * 109.47332 * 179.87050 * 1 2 3 28 28 H 1.09009 * 109.50136 * 57.68456 * 4 2 1 29 29 H 1.08997 * 109.53854 * 297.58592 * 4 2 1 30 30 H 1.08998 * 109.45834 * 180.80686 * 5 4 2 31 31 H 1.09003 * 109.45040 * 60.83701 * 5 4 2 32 32 H 1.08991 * 109.47284 * 314.77422 * 7 6 5 33 33 H 1.09002 * 109.47128 * 194.76866 * 7 6 5 34 34 H 0.97003 * 119.99717 * 3.38624 * 12 11 9 35 35 H 1.08997 * 117.50387 * 215.00034 * 17 8 7 36 36 H 1.09000 * 117.49990 * 0.02562 * 17 8 7 37 37 H 1.08999 * 117.49955 * 359.97438 * 18 8 7 38 38 H 1.09000 * 117.49755 * 145.00393 * 18 8 7 39 39 H 0.97002 * 119.99657 * 359.97438 * 22 21 19 40 40 H 0.96997 * 120.00032 * 179.97438 * 22 21 19 41 41 H 1.08996 * 109.50394 * 299.23910 * 24 19 6 42 42 H 1.09006 * 109.53579 * 179.13733 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0417 -0.7243 1.2482 5 6 3.5709 -0.7731 1.2128 6 7 4.0115 -1.4766 0.0015 7 6 5.4686 -1.6641 0.0023 8 6 5.8394 -2.7734 0.9887 9 6 5.1344 -4.0892 0.7823 10 1 4.2130 -4.2962 1.3063 11 6 5.6657 -5.0288 -0.0755 12 7 6.7012 -4.7228 -0.8263 13 14 4.9146 -6.7365 -0.1714 14 1 3.4943 -6.6297 -0.5915 15 1 4.9889 -7.3856 1.1621 16 1 5.6632 -7.5516 -1.1616 17 6 7.2834 -2.8170 1.4925 18 6 6.1599 -2.3616 2.4270 19 6 3.5722 -0.7735 -1.2104 20 1 3.9679 0.2422 -1.2047 21 6 4.0809 -1.5034 -2.4268 22 7 4.3195 -0.8270 -3.5679 23 8 4.2755 -2.6995 -2.3789 24 6 2.0430 -0.7247 -1.2474 25 1 -0.3634 0.5118 0.8911 26 1 -0.3634 0.5159 -0.8888 27 1 -0.3633 -1.0276 -0.0023 28 1 1.6456 -1.7397 1.2677 29 1 1.7152 -0.1891 2.1398 30 1 3.9378 -1.3008 2.0931 31 1 3.9664 0.2426 1.2071 32 1 5.9543 -0.7352 0.3008 33 1 5.7997 -1.9422 -0.9983 34 1 7.1217 -3.8528 -0.7413 35 1 7.7236 -3.7974 1.6746 36 1 7.9691 -2.0553 1.1215 37 1 6.1070 -1.3004 2.6704 38 1 5.8609 -3.0425 3.2239 39 1 4.1634 0.1296 -3.6063 40 1 4.6472 -1.2968 -4.3506 41 1 1.6469 -1.7399 -1.2671 42 1 1.7169 -0.1894 -2.1392 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602811607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:01 Heat of formation + Delta-G solvation = -41.906645 kcal Electronic energy + Delta-G solvation = -22077.254148 eV Core-core repulsion = 19056.451922 eV Total energy + Delta-G solvation = -3020.802226 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.29460 -39.18052 -38.29136 -35.02043 -34.54753 -33.68965 -31.85872 -29.70569 -26.98688 -25.94909 -25.16244 -23.44282 -22.88605 -21.25420 -20.96158 -20.54652 -18.47520 -18.16846 -17.60886 -16.46301 -16.31395 -15.63614 -15.56965 -15.49006 -15.24405 -15.06865 -14.55815 -14.36361 -14.12341 -13.75571 -13.59889 -13.08241 -12.81419 -12.69800 -12.57764 -12.37987 -12.24551 -12.17740 -11.96449 -11.73096 -11.57355 -11.41135 -10.97778 -10.57101 -10.51811 -10.29470 -10.22466 -10.05752 -8.90959 -8.30668 -5.93970 1.50503 1.61631 1.76955 1.80396 2.54883 2.69493 3.00597 3.43252 3.50561 3.85002 3.87745 3.92296 4.13921 4.18134 4.28417 4.32867 4.39060 4.51279 4.55309 4.59293 4.70405 4.77182 4.82188 4.84224 4.91915 4.95408 5.04748 5.09169 5.12921 5.26700 5.30713 5.39512 5.48089 5.57273 5.65672 6.00150 6.26196 6.31630 6.44201 6.55276 6.67078 6.97849 7.56555 7.80641 9.11325 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.016754 B = 0.007941 C = 0.007297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.804496 B = 3525.258953 C = 3836.441491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 H 0.087 0.913 4 C -0.108 4.108 5 C 0.060 3.940 6 N -0.514 5.514 7 C 0.112 3.888 8 C 0.017 3.983 9 C -0.534 4.534 10 H 0.026 0.974 11 C -0.014 4.014 12 N -0.933 5.933 13 Si 1.098 2.902 14 H -0.289 1.289 15 H -0.272 1.272 16 H -0.290 1.290 17 C -0.189 4.189 18 C -0.174 4.174 19 C 0.072 3.928 20 H 0.072 0.928 21 C 0.498 3.502 22 N -0.843 5.843 23 O -0.547 6.547 24 C -0.093 4.093 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.042 0.958 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.011 0.989 33 H 0.042 0.958 34 H 0.258 0.742 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.414 0.586 40 H 0.402 0.598 41 H 0.045 0.955 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.969 16.024 -0.960 18.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 H 0.106 0.894 4 C -0.146 4.146 5 C -0.067 4.067 6 N -0.239 5.239 7 C -0.016 4.016 8 C 0.016 3.984 9 C -0.572 4.572 10 H 0.045 0.955 11 C -0.213 4.213 12 N -0.570 5.570 13 Si 0.924 3.076 14 H -0.216 1.216 15 H -0.198 1.198 16 H -0.216 1.216 17 C -0.227 4.227 18 C -0.211 4.211 19 C -0.040 4.040 20 H 0.090 0.910 21 C 0.282 3.718 22 N -0.410 5.410 23 O -0.422 6.422 24 C -0.131 4.131 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.029 0.971 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.245 0.755 40 H 0.233 0.767 41 H 0.064 0.936 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.023 13.327 -1.517 16.745 hybrid contribution 0.844 1.963 0.270 2.154 sum -9.179 15.290 -1.247 17.877 Atomic orbital electron populations 1.21754 0.93497 1.01643 1.02788 1.21142 0.96734 0.99220 0.93021 0.89427 1.21655 0.93433 1.00587 0.98876 1.22153 0.96758 0.95464 0.92372 1.61311 1.12646 1.49077 1.00825 1.21495 0.86900 0.94191 0.99044 1.19058 0.93231 0.95068 0.91011 1.21032 1.08375 0.99434 1.28407 0.95524 1.26487 0.96457 1.06149 0.92208 1.70790 1.23907 1.24842 1.37460 0.83186 0.74972 0.73067 0.76373 1.21606 1.19800 1.21611 1.22667 0.92978 0.99893 1.07165 1.22914 1.03943 0.99452 0.94821 1.21674 0.98333 0.95231 0.88790 0.91047 1.21045 0.77122 0.87827 0.85854 1.43700 1.70417 1.13437 1.13427 1.90967 1.50398 1.16933 1.83925 1.21578 0.90414 1.01087 1.00014 0.91313 0.91297 0.93832 0.93458 0.89458 0.91720 0.94418 0.97126 0.93964 0.93144 0.92414 0.90503 0.88999 0.90808 0.75454 0.76685 0.93562 0.88726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.21 71.98 0.66 -1.75 16 2 C -0.08 -1.76 2.79 -10.72 -0.03 -1.79 16 3 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 4 C -0.11 -2.87 5.38 30.65 0.16 -2.71 16 5 C 0.06 1.96 5.26 86.33 0.45 2.42 16 6 N -0.51 -20.67 3.87 -875.50 -3.38 -24.05 16 7 C 0.11 5.16 4.47 86.30 0.39 5.54 16 8 C 0.02 0.88 0.82 -52.93 -0.04 0.84 16 9 C -0.53 -31.85 8.52 25.60 0.22 -31.64 16 10 H 0.03 1.65 7.83 -2.91 -0.02 1.63 16 11 C -0.01 -0.83 5.36 84.65 0.45 -0.38 16 12 N -0.93 -60.45 13.53 21.45 0.29 -60.16 16 13 Si 1.10 57.02 29.91 68.60 2.05 59.07 16 14 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 15 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 16 H -0.29 -15.06 7.11 99.48 0.71 -14.36 16 17 C -0.19 -9.21 8.55 30.62 0.26 -8.95 16 18 C -0.17 -7.64 8.47 30.62 0.26 -7.38 16 19 C 0.07 2.30 2.23 44.19 0.10 2.40 16 20 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 21 C 0.50 18.52 5.94 87.66 0.52 19.04 16 22 N -0.84 -21.00 8.87 -173.53 -1.54 -22.54 16 23 O -0.55 -28.57 16.21 -3.05 -0.05 -28.62 16 24 C -0.09 -2.43 4.64 30.65 0.14 -2.29 16 25 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 2.38 6.06 -2.39 -0.01 2.37 16 31 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.01 0.45 7.96 -2.39 -0.02 0.43 16 33 H 0.04 2.24 5.43 -2.39 -0.01 2.22 16 34 H 0.26 16.76 6.24 -92.71 -0.58 16.18 16 35 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 37 H 0.09 3.44 7.96 -2.39 -0.02 3.42 16 38 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 39 H 0.41 6.48 8.83 -92.71 -0.82 5.66 16 40 H 0.40 9.71 8.93 -92.71 -0.83 8.88 16 41 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -79.78 330.43 0.47 -79.31 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: -0.44 Total: 23.63 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: 3.55 Total: -26.64 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -4.63 Total: -106.75 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.05 Total: -28.62 kcal Atomic # 14 Polarization: 57.02 SS G_CDS: 2.05 Total: 59.07 kcal Total: -79.78 0.47 -79.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602811607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.404 kcal (2) G-P(sol) polarization free energy of solvation -79.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds