Wall clock time and date at job start Mon Mar 30 2020 00:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.53821 * 2 1 4 4 C 1.54888 * 110.48668 * 122.61792 * 2 1 3 5 5 C 1.54882 * 102.74855 * 156.62016 * 4 2 1 6 6 C 1.54269 * 104.19831 * 322.05471 * 5 4 2 7 7 C 1.53873 * 106.59646 * 23.61137 * 6 5 4 8 8 H 1.09002 * 110.03070 * 240.71534 * 7 6 5 9 9 C 1.53000 * 110.03127 * 119.33247 * 7 6 5 10 10 C 1.50698 * 109.46960 * 67.09319 * 9 7 6 11 11 O 1.21282 * 120.00320 * 0.02562 * 10 9 7 12 12 N 1.34778 * 120.00087 * 179.97438 * 10 9 7 13 13 C 1.46496 * 120.00092 * 180.02562 * 12 10 9 14 14 C 1.53951 * 113.74020 * 251.67560 * 13 12 10 15 15 N 1.47585 * 86.11810 * 222.04903 * 14 13 12 16 16 C 1.36933 * 134.49470 * 204.64451 * 15 14 13 17 17 H 1.07999 * 120.00189 * 179.97438 * 16 15 14 18 18 C 1.38818 * 119.99928 * 359.97438 * 16 15 14 19 19 N 1.31619 * 119.99558 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99962 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47233 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47362 * 120.00189 * 20 18 16 23 23 H 1.48505 * 109.46895 * 239.99642 * 20 18 16 24 24 C 1.47581 * 91.01117 * 24.63963 * 15 14 13 25 25 H 1.09005 * 109.47114 * 182.60676 * 1 2 3 26 26 H 1.09000 * 109.47519 * 302.61095 * 1 2 3 27 27 H 1.09007 * 109.47538 * 62.61202 * 1 2 3 28 28 H 1.08998 * 110.75533 * 38.30594 * 4 2 1 29 29 H 1.09003 * 110.74944 * 274.93491 * 4 2 1 30 30 H 1.09000 * 110.49014 * 203.37558 * 5 4 2 31 31 H 1.09001 * 110.48811 * 80.73570 * 5 4 2 32 32 H 1.08996 * 110.03023 * 264.32581 * 6 5 4 33 33 H 1.09002 * 110.03472 * 142.89742 * 6 5 4 34 34 H 1.09001 * 109.46702 * 187.09088 * 9 7 6 35 35 H 1.08994 * 109.47550 * 307.08877 * 9 7 6 36 36 H 0.97005 * 119.99584 * 359.97438 * 12 10 9 37 37 H 1.08994 * 112.94934 * 23.40542 * 13 12 10 38 38 H 1.09002 * 113.76603 * 336.34567 * 14 13 12 39 39 H 1.08994 * 113.77099 * 107.74735 * 14 13 12 40 40 H 0.97005 * 119.99497 * 179.97438 * 19 18 16 41 41 H 1.09005 * 113.76641 * 221.05669 * 24 15 14 42 42 H 1.09000 * 113.87204 * 89.67912 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0721 -0.7821 1.2221 5 6 3.4906 -1.1980 0.7599 6 6 3.3165 -1.5405 -0.7342 7 6 2.0699 -0.7788 -1.2174 8 1 1.3175 -1.4822 -1.5742 9 6 2.4504 0.1932 -2.3359 10 6 2.8762 -0.5848 -3.5543 11 8 2.8749 -1.7974 -3.5305 12 7 3.2575 0.0668 -4.6707 13 6 3.6708 -0.6896 -5.8553 14 6 5.1828 -0.6224 -6.1371 15 7 4.8096 -0.4645 -7.5562 16 6 5.4347 -0.7210 -8.7472 17 1 4.9300 -0.5101 -9.6784 18 6 6.7173 -1.2521 -8.7576 19 7 7.3321 -1.5096 -7.6227 20 14 7.5703 -1.6013 -10.3823 21 1 6.6722 -1.2259 -11.5037 22 1 8.8226 -0.8074 -10.4646 23 1 7.8948 -3.0479 -10.4701 24 6 3.4919 0.0808 -7.1761 25 1 -0.3633 -1.0266 0.0467 26 1 -0.3634 0.5538 0.8656 27 1 -0.3634 0.4728 -0.9125 28 1 1.4580 -1.6602 1.4221 29 1 2.1251 -0.1383 2.1000 30 1 3.8316 -2.0722 1.3144 31 1 4.1897 -0.3708 0.8827 32 1 3.1692 -2.6135 -0.8565 33 1 4.1928 -1.2171 -1.2961 34 1 1.5908 0.8157 -2.5844 35 1 3.2731 0.8261 -2.0031 36 1 3.2574 1.0367 -4.6901 37 1 3.2630 -1.7001 -5.8779 38 1 5.6705 0.2543 -5.7110 39 1 5.7113 -1.5512 -5.9226 40 1 8.2282 -1.8810 -7.6300 41 1 2.6704 -0.2866 -7.7912 42 1 3.4811 1.1640 -7.0550 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030355921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:00 Heat of formation + Delta-G solvation = -8.720188 kcal Electronic energy + Delta-G solvation = -20316.559529 eV Core-core repulsion = 17297.196376 eV Total energy + Delta-G solvation = -3019.363153 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.88682 -38.48305 -37.25775 -33.44665 -31.96472 -31.36656 -31.26207 -27.59983 -26.23319 -24.81434 -24.62174 -22.84484 -20.81488 -20.08079 -19.67870 -19.22066 -16.79500 -16.53174 -16.04770 -15.43188 -15.10340 -14.88359 -14.48490 -13.91550 -13.82679 -13.68122 -13.15973 -12.91360 -12.68836 -12.24647 -11.96649 -11.90231 -11.44684 -11.40381 -11.09888 -10.97703 -10.89181 -10.80882 -10.70373 -10.67097 -10.59769 -10.40995 -10.36543 -10.01566 -9.55526 -9.34153 -8.81517 -8.37492 -6.91880 -5.77690 -3.11652 3.01209 3.38716 3.43251 3.46903 3.58601 4.43556 4.46857 4.54367 4.61540 5.02966 5.12760 5.17801 5.23245 5.25851 5.37896 5.42817 5.48040 5.49542 5.57828 5.60593 5.66172 5.72580 5.81144 5.89254 5.96218 6.01891 6.08604 6.10434 6.23058 6.26842 6.40714 6.43256 6.48174 6.57714 6.81606 7.24298 7.38684 7.56899 7.94728 7.97418 8.64412 9.02762 9.68836 10.55903 11.39035 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.042882 B = 0.003434 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.793524 B = 8152.273157 C = 8587.279402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.074 0.926 4 C -0.119 4.119 5 C -0.128 4.128 6 C -0.111 4.111 7 C -0.071 4.071 8 H 0.080 0.920 9 C -0.136 4.136 10 C 0.508 3.492 11 O -0.541 6.541 12 N -0.719 5.719 13 C 0.092 3.908 14 C 0.154 3.846 15 N -0.607 5.607 16 C -0.225 4.225 17 H 0.082 0.918 18 C -0.007 4.007 19 N -0.918 5.918 20 Si 0.914 3.086 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.111 3.889 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.395 0.605 37 H 0.110 0.890 38 H 0.027 0.973 39 H 0.076 0.924 40 H 0.254 0.746 41 H 0.048 0.952 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.967 5.609 16.553 21.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.093 0.907 4 C -0.157 4.157 5 C -0.166 4.166 6 C -0.148 4.148 7 C -0.089 4.089 8 H 0.098 0.902 9 C -0.176 4.176 10 C 0.294 3.706 11 O -0.418 6.418 12 N -0.370 5.370 13 C -0.013 4.013 14 C 0.027 3.973 15 N -0.334 5.334 16 C -0.353 4.353 17 H 0.100 0.900 18 C -0.204 4.204 19 N -0.565 5.565 20 Si 0.744 3.256 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.216 1.216 24 C -0.016 4.016 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.229 0.771 37 H 0.128 0.872 38 H 0.045 0.955 39 H 0.094 0.906 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.697 4.603 16.328 20.606 hybrid contribution 0.679 0.506 -0.968 1.286 sum -11.018 5.108 15.360 19.581 Atomic orbital electron populations 1.21812 0.95120 1.01819 1.01411 1.22059 0.95344 0.99245 0.94674 0.90730 1.22551 0.96451 0.99613 0.97074 1.22406 0.96746 1.00817 0.96590 1.22106 0.97503 1.00738 0.94500 1.21586 0.98131 0.96140 0.93084 0.90201 1.21841 1.02638 0.99132 0.93964 1.20655 0.76993 0.88606 0.84384 1.90691 1.53693 1.14085 1.83361 1.46187 1.67295 1.09995 1.13482 1.23847 0.98557 0.96644 0.82278 1.22667 0.90896 1.00230 0.83469 1.45684 1.13295 1.72426 1.01967 1.19034 0.97051 1.36030 0.83159 0.90014 1.24827 0.96891 1.01415 0.97254 1.69847 1.13822 1.48845 1.23954 0.86017 0.79369 0.77708 0.82468 1.20407 1.21712 1.21593 1.22879 0.90467 0.95837 0.92381 0.92607 0.92910 0.92685 0.91540 0.91952 0.91966 0.91910 0.91498 0.91820 0.89384 0.89141 0.77135 0.87218 0.95500 0.90582 0.93598 0.93368 0.94794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.12 37.16 0.34 -0.77 16 2 C -0.09 -0.81 2.99 -88.96 -0.27 -1.08 16 3 H 0.07 0.59 7.86 -51.93 -0.41 0.19 16 4 C -0.12 -1.01 6.33 -24.74 -0.16 -1.16 16 5 C -0.13 -1.23 6.83 -25.07 -0.17 -1.40 16 6 C -0.11 -1.34 5.37 -25.61 -0.14 -1.48 16 7 C -0.07 -0.77 2.12 -89.50 -0.19 -0.96 16 8 H 0.08 1.00 7.64 -51.93 -0.40 0.60 16 9 C -0.14 -1.46 4.85 -27.88 -0.14 -1.59 16 10 C 0.51 7.79 7.37 -10.99 -0.08 7.71 16 11 O -0.54 -10.50 14.70 5.56 0.08 -10.42 16 12 N -0.72 -11.05 5.36 -55.33 -0.30 -11.34 16 13 C 0.09 1.81 4.43 -70.13 -0.31 1.50 16 14 C 0.15 3.74 7.32 -2.97 -0.02 3.71 16 15 N -0.61 -15.81 3.70 -178.05 -0.66 -16.47 16 16 C -0.23 -6.40 10.70 -15.06 -0.16 -6.56 16 17 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 19 N -0.92 -27.74 11.38 55.49 0.63 -27.11 16 20 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 C 0.11 2.26 8.69 -2.98 -0.03 2.23 16 25 H 0.05 0.44 8.12 -51.93 -0.42 0.02 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.07 0.56 8.04 -51.93 -0.42 0.14 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.86 7.36 -51.93 -0.38 0.48 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.40 4.87 8.73 -40.82 -0.36 4.51 16 37 H 0.11 2.38 7.46 -51.93 -0.39 1.99 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.08 2.11 7.15 -51.93 -0.37 1.73 16 40 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.03 0.63 8.12 -51.93 -0.42 0.21 16 LS Contribution 335.68 15.07 5.06 5.06 Total: -1.00 -32.71 335.68 -8.96 -41.67 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -7.34 Total: 1.45 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -1.41 Total: -0.15 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.32 Total: -54.92 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.08 Total: -10.42 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.71 -8.96 -41.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030355921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.946 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds