Wall clock time and date at job start Mon Mar 30 2020 01:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 119.99950 * 2 1 4 4 O 1.21281 * 119.99999 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.99977 * 0.02562 * 3 2 1 6 6 N 1.46497 * 109.47069 * 179.97438 * 5 3 2 7 7 C 1.36940 * 119.99974 * 269.99361 * 6 5 3 8 8 H 1.07995 * 120.00528 * 188.58318 * 7 6 5 9 9 C 1.38817 * 119.99744 * 8.59008 * 7 6 5 10 10 N 1.31623 * 119.99690 * 24.34083 * 9 7 6 11 11 Si 1.86798 * 120.00002 * 204.33454 * 9 7 6 12 12 H 1.48498 * 109.47177 * 60.00202 * 11 9 7 13 13 H 1.48504 * 109.46961 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47180 * 300.00309 * 11 9 7 15 15 C 1.46497 * 120.00307 * 89.99778 * 6 5 3 16 16 C 1.54970 * 110.92399 * 121.35846 * 15 6 5 17 17 C 1.54260 * 104.16137 * 156.29626 * 16 15 6 18 18 C 1.53883 * 106.63946 * 336.44862 * 17 16 15 19 19 C 1.54261 * 106.59850 * 359.97424 * 18 17 16 20 20 C 1.46500 * 120.00020 * 180.02562 * 2 1 3 21 21 C 1.53004 * 117.49979 * 8.61893 * 20 2 1 22 22 C 1.52999 * 59.99946 * 252.50814 * 21 20 2 23 23 H 1.08996 * 109.47621 * 89.99763 * 1 2 3 24 24 H 1.09001 * 109.46999 * 209.99569 * 1 2 3 25 25 H 1.08995 * 109.46904 * 329.99269 * 1 2 3 26 26 H 1.08998 * 109.47494 * 59.99309 * 5 3 2 27 27 H 1.09002 * 109.47028 * 300.00035 * 5 3 2 28 28 H 0.97007 * 119.99551 * 180.02562 * 10 9 7 29 29 H 1.08995 * 110.67143 * 358.05706 * 15 6 5 30 30 H 1.08999 * 110.47668 * 37.64236 * 16 15 6 31 31 H 1.08999 * 110.52842 * 274.97743 * 16 15 6 32 32 H 1.08993 * 110.03671 * 217.13675 * 17 16 15 33 33 H 1.09001 * 110.03371 * 95.74994 * 17 16 15 34 34 H 1.09001 * 110.03030 * 119.26007 * 18 17 16 35 35 H 1.09002 * 110.02652 * 240.63963 * 18 17 16 36 36 H 1.08994 * 110.48976 * 142.29491 * 19 18 17 37 37 H 1.09006 * 110.48684 * 264.93563 * 19 18 17 38 38 H 1.09002 * 115.55276 * 154.32809 * 20 2 1 39 39 H 1.09000 * 117.49794 * 0.02562 * 21 20 2 40 40 H 1.09004 * 117.49640 * 145.02350 * 21 20 2 41 41 H 1.08998 * 117.50232 * 252.50872 * 22 21 20 42 42 H 1.09002 * 117.51631 * 107.47783 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 7 2.3373 3.5858 0.0011 7 6 2.7822 4.1058 1.1873 8 1 3.3720 5.0104 1.1930 9 6 2.4751 3.4699 2.3824 10 7 2.1999 2.1828 2.3912 11 14 2.4525 4.4409 3.9780 12 1 1.4461 5.5285 3.8815 13 1 2.0993 3.5373 5.1024 14 1 3.7949 5.0285 4.2189 15 6 2.8134 4.1431 -1.2673 16 6 2.4777 5.6526 -1.3693 17 6 3.5126 6.2025 -2.3724 18 6 4.7096 5.2358 -2.3449 19 6 4.3612 4.1318 -1.3254 20 6 2.1975 -1.2687 -0.0006 21 6 1.3887 -2.5514 -0.2045 22 6 1.9632 -2.2204 1.1743 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 0.7590 2.5298 0.8907 27 1 0.7584 2.5302 -0.8892 28 1 1.9849 1.7385 3.2264 29 1 2.3912 3.5964 -2.1104 30 1 2.5931 6.1353 -0.3989 31 1 1.4658 5.7943 -1.7490 32 1 3.8314 7.2002 -2.0708 33 1 3.0819 6.2350 -3.3732 34 1 4.8592 4.7987 -3.3322 35 1 5.6094 5.7648 -2.0308 36 1 4.7229 3.1640 -1.6726 37 1 4.7813 4.3688 -0.3479 38 1 3.2002 -1.2325 -0.4266 39 1 0.3116 -2.4512 -0.3387 40 1 1.8592 -3.3593 -0.7650 41 1 2.8115 -2.8104 1.5211 42 1 1.2642 -1.9022 1.9479 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080215064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:57 Heat of formation + Delta-G solvation = 21.252889 kcal Electronic energy + Delta-G solvation = -21699.841594 eV Core-core repulsion = 18681.778171 eV Total energy + Delta-G solvation = -3018.063423 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.88405 -37.63059 -36.22732 -34.04380 -32.83854 -30.87323 -27.85535 -27.56013 -26.23877 -26.04787 -23.02232 -22.01351 -20.96968 -19.51225 -19.38686 -18.33088 -16.35277 -16.21222 -15.62916 -15.33142 -14.79392 -14.45606 -14.01527 -13.75659 -13.29431 -12.83117 -12.69565 -12.49180 -12.01024 -11.82911 -11.78294 -11.25748 -11.17516 -11.12224 -10.76210 -10.66790 -10.62388 -10.47481 -10.35737 -10.29021 -10.08842 -10.00486 -9.82435 -9.76072 -9.42690 -8.62836 -8.17365 -7.50154 -6.82840 -5.76249 -3.01269 3.42621 3.48776 3.49943 3.85988 4.08229 4.46668 4.58888 5.20928 5.24695 5.32080 5.32309 5.40981 5.41242 5.53856 5.63401 5.72697 5.83349 5.96676 6.08891 6.13730 6.14636 6.20589 6.25467 6.26313 6.39025 6.39643 6.49570 6.51416 6.56867 6.57773 6.72072 6.82950 7.05446 7.13991 7.23237 7.30793 7.54504 7.83448 8.31646 8.58287 9.21525 9.74102 9.93216 10.32814 11.33441 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015426 B = 0.007920 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.725675 B = 3534.503392 C = 4743.537175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.607 5.607 3 C 0.535 3.465 4 O -0.525 6.525 5 C 0.166 3.834 6 N -0.566 5.566 7 C -0.237 4.237 8 H 0.079 0.921 9 C -0.003 4.003 10 N -0.897 5.897 11 Si 0.899 3.101 12 H -0.286 1.286 13 H -0.293 1.293 14 H -0.286 1.286 15 C 0.176 3.824 16 C -0.135 4.135 17 C -0.121 4.121 18 C -0.124 4.124 19 C -0.129 4.129 20 C 0.104 3.896 21 C -0.200 4.200 22 C -0.197 4.197 23 H 0.040 0.960 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.105 0.895 27 H 0.034 0.966 28 H 0.252 0.748 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.323 -2.759 -7.353 8.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.343 5.343 3 C 0.324 3.676 4 O -0.398 6.398 5 C 0.036 3.964 6 N -0.283 5.283 7 C -0.366 4.366 8 H 0.096 0.904 9 C -0.200 4.200 10 N -0.543 5.543 11 Si 0.729 3.271 12 H -0.213 1.213 13 H -0.220 1.220 14 H -0.213 1.213 15 C 0.068 3.932 16 C -0.175 4.175 17 C -0.159 4.159 18 C -0.163 4.163 19 C -0.168 4.168 20 C -0.002 4.002 21 C -0.238 4.238 22 C -0.236 4.236 23 H 0.059 0.941 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.122 0.878 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.138 0.862 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.679 -2.763 -7.196 8.541 hybrid contribution 0.044 0.084 1.174 1.178 sum -3.635 -2.679 -6.021 7.526 Atomic orbital electron populations 1.21538 0.81421 1.02453 1.00037 1.47674 1.05346 1.04556 1.76742 1.22159 0.88903 0.84362 0.72198 1.90493 1.14691 1.86379 1.48217 1.20799 0.91424 0.84409 0.99784 1.43982 1.48784 1.34174 1.01328 1.19077 1.29675 1.04964 0.82892 0.90362 1.24672 1.02688 0.95095 0.97501 1.69906 1.52071 1.06683 1.25659 0.86388 0.77882 0.79345 0.83437 1.21341 1.21959 1.21265 1.21275 0.92312 0.91825 0.87825 1.22775 0.96920 0.98713 0.99054 1.22058 0.96568 0.98333 0.98925 1.22104 0.97496 0.97443 0.99212 1.22706 0.98594 0.96686 0.98814 1.21337 0.96820 0.81243 1.00754 1.23328 1.00141 0.99647 1.00731 1.23261 1.03470 1.04747 0.92115 0.94115 0.92608 0.90899 0.87759 0.94780 0.93749 0.92806 0.90813 0.93040 0.92904 0.92984 0.93071 0.92983 0.92725 0.90844 0.86166 0.88822 0.88935 0.89139 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.38 9.49 59.85 0.57 1.95 16 2 N -0.61 -11.94 3.21 -173.94 -0.56 -12.50 16 3 C 0.54 12.74 5.73 -10.99 -0.06 12.68 16 4 O -0.53 -14.68 15.88 5.56 0.09 -14.59 16 5 C 0.17 3.82 3.96 -5.20 -0.02 3.80 16 6 N -0.57 -13.74 2.08 -164.72 -0.34 -14.08 16 7 C -0.24 -6.32 8.04 -15.06 -0.12 -6.44 16 8 H 0.08 2.08 6.79 -52.49 -0.36 1.72 16 9 C 0.00 -0.07 4.91 -17.43 -0.09 -0.15 16 10 N -0.90 -25.05 8.94 55.49 0.50 -24.56 16 11 Si 0.90 21.76 29.62 -169.99 -5.03 16.73 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 C 0.18 3.68 3.42 -65.90 -0.23 3.46 16 16 C -0.14 -2.46 6.39 -25.03 -0.16 -2.62 16 17 C -0.12 -1.88 6.80 -25.61 -0.17 -2.05 16 18 C -0.12 -2.05 6.80 -25.61 -0.17 -2.23 16 19 C -0.13 -2.66 6.35 -25.08 -0.16 -2.82 16 20 C 0.10 1.88 6.21 -67.93 -0.42 1.46 16 21 C -0.20 -2.72 9.72 -26.73 -0.26 -2.98 16 22 C -0.20 -3.11 10.13 -26.73 -0.27 -3.39 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.76 6.33 -51.93 -0.33 0.43 16 25 H 0.07 1.17 6.44 -51.93 -0.33 0.83 16 26 H 0.10 2.55 5.54 -51.93 -0.29 2.26 16 27 H 0.03 0.68 7.93 -51.93 -0.41 0.27 16 28 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.05 1.08 7.89 -51.93 -0.41 0.68 16 30 H 0.07 1.47 6.81 -51.93 -0.35 1.12 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.07 1.72 6.88 -51.93 -0.36 1.36 16 38 H 0.12 2.34 7.67 -51.93 -0.40 1.94 16 39 H 0.09 1.17 6.46 -51.93 -0.34 0.83 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.09 1.54 8.12 -51.93 -0.42 1.11 16 LS Contribution 327.46 15.07 4.93 4.93 Total: -1.00 -30.80 327.46 -8.92 -39.72 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.93 Total: 3.69 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -1.57 Total: 0.66 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.41 Total: -51.14 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.09 Total: -14.59 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.80 -8.92 -39.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.977 kcal (2) G-P(sol) polarization free energy of solvation -30.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds