Wall clock time and date at job start Mon Mar 30 2020 01:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 119.99950 * 2 1 4 4 O 1.21281 * 119.99999 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.99977 * 0.02562 * 3 2 1 6 6 N 1.46497 * 109.47069 * 179.97438 * 5 3 2 7 7 C 1.36940 * 119.99974 * 269.99361 * 6 5 3 8 8 H 1.07995 * 120.00528 * 188.58318 * 7 6 5 9 9 C 1.38817 * 119.99744 * 8.59008 * 7 6 5 10 10 N 1.31623 * 119.99690 * 24.34083 * 9 7 6 11 11 Si 1.86798 * 120.00002 * 204.33454 * 9 7 6 12 12 H 1.48498 * 109.47177 * 60.00202 * 11 9 7 13 13 H 1.48504 * 109.46961 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47180 * 300.00309 * 11 9 7 15 15 C 1.46497 * 120.00307 * 89.99778 * 6 5 3 16 16 C 1.54970 * 110.92399 * 121.35846 * 15 6 5 17 17 C 1.54260 * 104.16137 * 156.29626 * 16 15 6 18 18 C 1.53883 * 106.63946 * 336.44862 * 17 16 15 19 19 C 1.54261 * 106.59850 * 359.97424 * 18 17 16 20 20 C 1.46500 * 120.00020 * 180.02562 * 2 1 3 21 21 C 1.53004 * 117.49979 * 8.61893 * 20 2 1 22 22 C 1.52999 * 59.99946 * 252.50814 * 21 20 2 23 23 H 1.08996 * 109.47621 * 89.99763 * 1 2 3 24 24 H 1.09001 * 109.46999 * 209.99569 * 1 2 3 25 25 H 1.08995 * 109.46904 * 329.99269 * 1 2 3 26 26 H 1.08998 * 109.47494 * 59.99309 * 5 3 2 27 27 H 1.09002 * 109.47028 * 300.00035 * 5 3 2 28 28 H 0.97007 * 119.99551 * 180.02562 * 10 9 7 29 29 H 1.08995 * 110.67143 * 358.05706 * 15 6 5 30 30 H 1.08999 * 110.47668 * 37.64236 * 16 15 6 31 31 H 1.08999 * 110.52842 * 274.97743 * 16 15 6 32 32 H 1.08993 * 110.03671 * 217.13675 * 17 16 15 33 33 H 1.09001 * 110.03371 * 95.74994 * 17 16 15 34 34 H 1.09001 * 110.03030 * 119.26007 * 18 17 16 35 35 H 1.09002 * 110.02652 * 240.63963 * 18 17 16 36 36 H 1.08994 * 110.48976 * 142.29491 * 19 18 17 37 37 H 1.09006 * 110.48684 * 264.93563 * 19 18 17 38 38 H 1.09002 * 115.55276 * 154.32809 * 20 2 1 39 39 H 1.09000 * 117.49794 * 0.02562 * 21 20 2 40 40 H 1.09004 * 117.49640 * 145.02350 * 21 20 2 41 41 H 1.08998 * 117.50232 * 252.50872 * 22 21 20 42 42 H 1.09002 * 117.51631 * 107.47783 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 7 2.3373 3.5858 0.0011 7 6 2.7822 4.1058 1.1873 8 1 3.3720 5.0104 1.1930 9 6 2.4751 3.4699 2.3824 10 7 2.1999 2.1828 2.3912 11 14 2.4525 4.4409 3.9780 12 1 1.4461 5.5285 3.8815 13 1 2.0993 3.5373 5.1024 14 1 3.7949 5.0285 4.2189 15 6 2.8134 4.1431 -1.2673 16 6 2.4777 5.6526 -1.3693 17 6 3.5126 6.2025 -2.3724 18 6 4.7096 5.2358 -2.3449 19 6 4.3612 4.1318 -1.3254 20 6 2.1975 -1.2687 -0.0006 21 6 1.3887 -2.5514 -0.2045 22 6 1.9632 -2.2204 1.1743 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 0.7590 2.5298 0.8907 27 1 0.7584 2.5302 -0.8892 28 1 1.9849 1.7385 3.2264 29 1 2.3912 3.5964 -2.1104 30 1 2.5931 6.1353 -0.3989 31 1 1.4658 5.7943 -1.7490 32 1 3.8314 7.2002 -2.0708 33 1 3.0819 6.2350 -3.3732 34 1 4.8592 4.7987 -3.3322 35 1 5.6094 5.7648 -2.0308 36 1 4.7229 3.1640 -1.6726 37 1 4.7813 4.3688 -0.3479 38 1 3.2002 -1.2325 -0.4266 39 1 0.3116 -2.4512 -0.3387 40 1 1.8592 -3.3593 -0.7650 41 1 2.8115 -2.8104 1.5211 42 1 1.2642 -1.9022 1.9479 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080215064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:56 Heat of formation + Delta-G solvation = 3.658935 kcal Electronic energy + Delta-G solvation = -21700.604525 eV Core-core repulsion = 18681.778171 eV Total energy + Delta-G solvation = -3018.826354 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.52271 -39.18119 -37.78963 -35.86847 -34.36171 -32.80525 -29.35229 -29.21370 -27.89471 -27.60504 -24.81445 -23.22234 -22.49484 -21.14604 -20.88306 -19.90240 -18.20842 -17.83827 -17.36667 -16.89230 -16.38858 -15.96943 -15.81832 -15.21536 -14.97034 -14.38869 -14.35229 -14.02214 -13.59723 -13.35610 -13.12337 -13.08894 -12.87324 -12.60583 -12.38821 -12.32379 -12.25529 -12.04329 -11.91647 -11.78794 -11.78311 -11.59593 -11.37212 -11.17360 -11.12464 -10.54002 -10.13553 -9.02185 -8.74402 -7.81190 -5.06275 1.47312 1.48469 1.55158 2.32647 2.45439 2.62191 3.09840 3.32216 3.56881 3.92446 4.00476 4.01902 4.08148 4.16798 4.26520 4.35757 4.51144 4.59111 4.68930 4.73497 4.78103 4.85199 4.88787 4.90246 4.94154 4.98727 5.03553 5.17058 5.18583 5.23840 5.25808 5.28881 5.32925 5.58212 5.61854 5.65567 5.72592 6.07453 6.34260 6.90733 7.21278 7.87644 8.08135 8.34294 9.25315 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015426 B = 0.007920 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.725675 B = 3534.503392 C = 4743.537175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.606 5.606 3 C 0.532 3.468 4 O -0.582 6.582 5 C 0.168 3.832 6 N -0.580 5.580 7 C -0.236 4.236 8 H 0.071 0.929 9 C -0.053 4.053 10 N -0.915 5.915 11 Si 0.956 3.044 12 H -0.277 1.277 13 H -0.300 1.300 14 H -0.291 1.291 15 C 0.165 3.835 16 C -0.127 4.127 17 C -0.112 4.112 18 C -0.116 4.116 19 C -0.126 4.126 20 C 0.060 3.940 21 C -0.151 4.151 22 C -0.200 4.200 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.242 0.758 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.030 0.970 37 H 0.036 0.964 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.097 0.903 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.835 -2.753 -8.968 11.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.341 5.341 3 C 0.321 3.679 4 O -0.459 6.459 5 C 0.038 3.962 6 N -0.298 5.298 7 C -0.366 4.366 8 H 0.089 0.911 9 C -0.247 4.247 10 N -0.562 5.562 11 Si 0.786 3.214 12 H -0.203 1.203 13 H -0.226 1.226 14 H -0.218 1.218 15 C 0.058 3.942 16 C -0.166 4.166 17 C -0.150 4.150 18 C -0.154 4.154 19 C -0.165 4.165 20 C -0.046 4.046 21 C -0.188 4.188 22 C -0.239 4.239 23 H 0.088 0.912 24 H 0.096 0.904 25 H 0.082 0.918 26 H 0.105 0.895 27 H 0.081 0.919 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.111 0.889 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.115 0.885 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.239 -2.769 -8.836 10.639 hybrid contribution 0.521 0.007 1.629 1.711 sum -4.718 -2.761 -7.207 9.046 Atomic orbital electron populations 1.21775 0.78740 1.03174 1.02108 1.47558 1.07075 1.04182 1.75274 1.22197 0.88255 0.85829 0.71622 1.90456 1.16905 1.87431 1.51142 1.20771 0.91233 0.84033 1.00167 1.44194 1.49058 1.34740 1.01786 1.19211 1.28748 1.04483 0.84131 0.91134 1.25281 1.03692 0.95872 0.99865 1.70086 1.53494 1.07454 1.25184 0.85503 0.77509 0.78121 0.80272 1.20306 1.22650 1.21836 1.21551 0.92231 0.93658 0.86768 1.22660 0.98878 0.96145 0.98963 1.22031 0.95025 0.98382 0.99518 1.22057 0.98491 0.96195 0.98638 1.22581 0.98574 0.97190 0.98180 1.21413 0.97085 0.82197 1.03856 1.23417 1.00804 0.96529 0.98059 1.23271 1.03933 1.04000 0.92684 0.91162 0.90352 0.91835 0.89497 0.91852 0.94889 0.91932 0.93115 0.91372 0.91372 0.90204 0.91049 0.92060 0.95108 0.94550 0.88852 0.86714 0.86349 0.88494 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.46 9.49 127.77 1.21 3.67 16 2 N -0.61 -23.84 3.21 -822.60 -2.64 -26.48 16 3 C 0.53 26.01 5.73 87.66 0.50 26.51 16 4 O -0.58 -34.16 15.88 -3.03 -0.05 -34.21 16 5 C 0.17 7.83 3.96 85.63 0.34 8.17 16 6 N -0.58 -28.81 2.08 -675.06 -1.41 -30.22 16 7 C -0.24 -12.94 8.04 84.03 0.68 -12.27 16 8 H 0.07 3.89 6.79 -2.91 -0.02 3.87 16 9 C -0.05 -2.94 4.91 84.86 0.42 -2.52 16 10 N -0.91 -52.85 8.94 21.65 0.19 -52.65 16 11 Si 0.96 46.02 29.62 68.60 2.03 48.05 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 14 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 15 C 0.16 6.91 3.42 46.31 0.16 7.07 16 16 C -0.13 -4.45 6.39 31.70 0.20 -4.25 16 17 C -0.11 -3.13 6.80 31.32 0.21 -2.92 16 18 C -0.12 -3.62 6.80 31.32 0.21 -3.40 16 19 C -0.13 -5.33 6.35 31.67 0.20 -5.13 16 20 C 0.06 2.15 6.21 44.99 0.28 2.43 16 21 C -0.15 -3.63 9.72 30.60 0.30 -3.33 16 22 C -0.20 -6.12 10.13 30.59 0.31 -5.81 16 23 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.08 1.92 6.33 -2.39 -0.02 1.90 16 25 H 0.06 1.98 6.44 -2.39 -0.02 1.96 16 26 H 0.09 4.35 5.54 -2.39 -0.01 4.34 16 27 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 28 H 0.24 13.97 8.31 -92.70 -0.77 13.19 16 29 H 0.06 2.48 7.89 -2.39 -0.02 2.46 16 30 H 0.05 2.00 6.81 -2.39 -0.02 1.99 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.04 1.77 6.88 -2.38 -0.02 1.76 16 38 H 0.09 3.81 7.67 -2.39 -0.02 3.79 16 39 H 0.11 2.33 6.46 -2.39 -0.02 2.31 16 40 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 41 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 42 H 0.08 2.73 8.12 -2.39 -0.02 2.71 16 Total: -1.00 -70.59 327.46 4.14 -66.45 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.99 Total: 20.84 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 5.02 Total: 8.21 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -3.85 Total: -109.35 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -0.05 Total: -34.21 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -70.59 4.14 -66.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.113 kcal (2) G-P(sol) polarization free energy of solvation -70.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds