Wall clock time and date at job start Mon Mar 30 2020 00:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46905 * 109.47089 * 2 1 4 4 C 1.46896 * 110.99921 * 287.94271 * 3 2 1 5 5 C 1.50698 * 109.46934 * 160.36190 * 4 3 2 6 6 H 1.08000 * 119.99905 * 4.66339 * 5 4 3 7 7 C 1.37878 * 120.00018 * 184.67150 * 5 4 3 8 8 N 1.31513 * 119.99917 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99964 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47409 * 59.99682 * 9 7 5 11 11 H 1.48499 * 109.46714 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46723 * 299.99128 * 9 7 5 13 13 C 1.46902 * 110.99848 * 163.98682 * 3 2 1 14 14 C 1.50695 * 109.47325 * 293.95533 * 13 3 2 15 15 N 1.30257 * 125.62105 * 90.02649 * 14 13 3 16 16 C 1.34473 * 108.70423 * 179.73468 * 15 14 13 17 17 C 1.34338 * 107.66537 * 0.39235 * 16 15 14 18 18 C 1.50697 * 126.44194 * 179.87827 * 17 16 15 19 19 C 1.53001 * 109.47468 * 59.70807 * 18 17 16 20 20 C 1.53003 * 109.47224 * 299.71245 * 18 17 16 21 21 C 1.52997 * 109.47205 * 179.71198 * 18 17 16 22 22 O 1.33970 * 125.62189 * 269.99929 * 14 13 3 23 23 H 1.09001 * 109.47147 * 59.31782 * 1 2 3 24 24 H 1.09003 * 109.46926 * 179.31237 * 1 2 3 25 25 H 1.08993 * 109.47690 * 299.31692 * 1 2 3 26 26 H 1.08997 * 109.47457 * 239.99881 * 2 1 3 27 27 H 1.09000 * 109.47104 * 119.99820 * 2 1 3 28 28 H 1.09002 * 109.47240 * 280.36367 * 4 3 2 29 29 H 1.09003 * 109.46915 * 40.36475 * 4 3 2 30 30 H 0.97002 * 119.99821 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.46644 * 173.95308 * 13 3 2 32 32 H 1.09008 * 109.46975 * 53.95586 * 13 3 2 33 33 H 1.08004 * 126.17083 * 180.26736 * 16 15 14 34 34 H 1.09003 * 109.47435 * 300.00333 * 19 18 17 35 35 H 1.08997 * 109.47422 * 179.97438 * 19 18 17 36 36 H 1.09009 * 109.46510 * 59.99987 * 19 18 17 37 37 H 1.08999 * 109.47659 * 180.02562 * 20 18 17 38 38 H 1.09003 * 109.47003 * 300.00073 * 20 18 17 39 39 H 1.09003 * 109.47505 * 59.99932 * 20 18 17 40 40 H 1.08998 * 109.47243 * 299.99801 * 21 18 17 41 41 H 1.09003 * 109.47042 * 59.99914 * 21 18 17 42 42 H 1.08997 * 109.47290 * 179.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7968 2.0222 -1.3047 5 6 1.8480 3.5200 -1.1475 6 1 2.1024 3.9543 -0.1919 7 6 1.5699 4.3361 -2.2235 8 7 1.2605 3.8072 -3.3872 9 14 1.6341 6.1928 -2.0288 10 1 3.0003 6.6001 -1.6134 11 1 1.2978 6.8381 -3.3233 12 1 0.6554 6.6162 -0.9952 13 6 3.4380 1.4419 0.3783 14 6 3.5931 1.0068 1.8127 15 7 3.7967 -0.2145 2.2172 16 6 3.8886 -0.2148 3.5588 17 6 3.7263 1.0509 3.9788 18 6 3.7493 1.5299 5.4074 19 6 5.1035 1.1953 6.0359 20 6 2.6362 0.8366 6.1957 21 6 3.5313 3.0439 5.4413 22 8 3.5450 1.8124 2.8821 23 1 -0.3633 0.5244 -0.8838 24 1 -0.3633 -1.0276 -0.0123 25 1 -0.3634 0.5031 0.8960 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.5716 1.7033 -2.0019 29 1 0.8195 1.7304 -1.6893 30 1 1.0652 4.3813 -4.1443 31 1 3.8030 2.4629 0.2668 32 1 4.0131 0.7779 -0.2671 33 1 4.0599 -1.0773 4.1858 34 1 5.2588 0.1167 6.0118 35 1 5.1203 1.5422 7.0691 36 1 5.8966 1.6892 5.4742 37 1 2.6524 1.1834 7.2290 38 1 1.6713 1.0749 5.7481 39 1 2.7914 -0.2420 6.1717 40 1 4.3243 3.5377 4.8798 41 1 2.5665 3.2822 4.9936 42 1 3.5475 3.3903 6.4746 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081040574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:58 Heat of formation + Delta-G solvation = 10.777158 kcal Electronic energy + Delta-G solvation = -20786.512777 eV Core-core repulsion = 17767.995092 eV Total energy + Delta-G solvation = -3018.517685 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.04473 -37.35418 -36.76734 -34.35733 -32.64544 -30.96054 -29.33037 -27.54167 -27.50098 -26.98786 -25.00227 -22.71494 -22.41632 -21.23036 -19.80545 -19.53619 -16.75124 -16.61871 -16.20149 -15.28065 -14.78019 -14.70042 -14.24042 -14.02979 -13.89200 -13.61528 -13.23459 -13.15062 -12.55115 -12.39632 -12.18870 -11.86868 -11.84782 -11.63088 -11.40086 -11.21396 -11.18594 -11.07674 -10.97537 -10.92860 -10.80677 -10.60037 -10.28457 -10.13058 -9.72550 -9.28425 -8.44671 -8.37966 -7.37287 -6.03301 -4.04989 1.75602 2.91207 2.99791 3.33928 3.37963 3.41299 4.32181 4.42987 4.54136 4.73586 4.74026 4.97820 5.07237 5.29061 5.32775 5.37599 5.42010 5.55448 5.63243 5.69836 5.73095 5.77904 5.81787 5.86921 5.97933 6.05790 6.08058 6.14722 6.19063 6.21933 6.37183 6.40898 6.60445 6.65497 6.83593 7.15144 7.28055 7.78735 8.02759 8.09877 8.13015 8.48435 9.01957 9.59288 11.07087 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019745 B = 0.005115 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.775723 B = 5472.261955 C = 6315.000427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.044 3.956 3 N -0.531 5.531 4 C 0.192 3.808 5 C -0.509 4.509 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.151 3.849 14 C 0.222 3.778 15 N -0.492 5.492 16 C -0.042 4.042 17 C -0.048 4.048 18 C 0.021 3.979 19 C -0.138 4.138 20 C -0.139 4.139 21 C -0.145 4.145 22 O -0.186 6.186 23 H 0.061 0.939 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.026 0.974 27 H 0.069 0.931 28 H -0.006 1.006 29 H 0.043 0.957 30 H 0.262 0.738 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.174 0.826 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.993 -6.117 17.001 18.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.085 4.085 3 N -0.258 5.258 4 C 0.068 3.932 5 C -0.548 4.548 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C 0.022 3.978 14 C 0.015 3.985 15 N -0.222 5.222 16 C -0.181 4.181 17 C -0.102 4.102 18 C 0.020 3.980 19 C -0.196 4.196 20 C -0.196 4.196 21 C -0.202 4.202 22 O -0.071 6.071 23 H 0.080 0.920 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.088 0.912 28 H 0.011 0.989 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.127 0.873 32 H 0.085 0.915 33 H 0.191 0.809 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.710 -6.263 16.728 18.472 hybrid contribution 0.362 1.019 -0.155 1.092 sum 5.072 -5.244 16.572 18.107 Atomic orbital electron populations 1.21721 0.95449 0.99985 1.02714 1.22130 0.95974 0.90192 1.00160 1.62138 1.13161 1.15410 1.35068 1.19832 0.97019 0.94207 0.82110 1.21134 1.46711 0.90539 0.96393 0.91893 1.24965 0.95334 0.98950 0.95164 1.69942 1.47412 1.35409 1.01005 0.86571 0.78566 0.85172 0.77172 1.20258 1.21364 1.20182 1.20429 0.92687 1.02987 0.81745 1.26606 0.97380 0.83272 0.91231 1.70470 1.19346 1.21265 1.11115 1.22855 1.07143 0.96882 0.91241 1.23235 1.07403 0.90778 0.88760 1.19038 0.97016 0.96776 0.85167 1.21920 0.95068 1.02042 1.00540 1.21919 0.97760 1.00453 0.99489 1.21865 1.03112 0.93211 1.02018 1.84445 1.67990 1.39957 1.14731 0.91966 0.93553 0.92707 0.95577 0.91246 0.98856 0.93867 0.92826 0.87289 0.91498 0.80904 0.92064 0.91477 0.92172 0.91493 0.91976 0.92079 0.92018 0.91748 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.99 37.16 0.37 -2.20 16 2 C 0.04 0.86 5.55 -3.82 -0.02 0.84 16 3 N -0.53 -11.67 4.37 -237.52 -1.04 -12.71 16 4 C 0.19 4.92 4.59 -4.98 -0.02 4.90 16 5 C -0.51 -14.07 8.61 -34.44 -0.30 -14.37 16 6 H 0.06 1.73 7.66 -52.49 -0.40 1.33 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -26.29 13.29 55.43 0.74 -25.56 16 9 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 13 C 0.15 2.99 5.42 -4.98 -0.03 2.96 16 14 C 0.22 4.16 7.03 -12.95 -0.09 4.07 16 15 N -0.49 -8.78 10.16 -11.10 -0.11 -8.90 16 16 C -0.04 -0.63 11.24 -17.77 -0.20 -0.83 16 17 C -0.05 -0.70 5.70 -35.69 -0.20 -0.90 16 18 C 0.02 0.22 0.93 -155.66 -0.15 0.08 16 19 C -0.14 -1.19 8.35 37.16 0.31 -0.88 16 20 C -0.14 -1.26 8.36 37.16 0.31 -0.95 16 21 C -0.14 -1.57 8.06 37.16 0.30 -1.27 16 22 O -0.19 -3.35 10.24 5.38 0.06 -3.29 16 23 H 0.06 1.22 6.52 -51.93 -0.34 0.89 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.03 0.51 8.05 -51.93 -0.42 0.09 16 27 H 0.07 1.33 6.06 -51.93 -0.31 1.02 16 28 H -0.01 -0.17 8.00 -51.93 -0.42 -0.59 16 29 H 0.04 1.18 6.24 -51.93 -0.32 0.85 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.11 2.22 7.32 -51.93 -0.38 1.84 16 32 H 0.07 1.27 8.12 -51.92 -0.42 0.85 16 33 H 0.17 2.01 8.06 -52.48 -0.42 1.59 16 34 H 0.06 0.48 8.01 -51.93 -0.42 0.07 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.51 8.02 -51.93 -0.42 0.09 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 341.84 15.07 5.15 5.15 Total: -1.00 -30.29 341.84 -7.25 -37.54 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -7.21 Total: -1.67 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 0.19 Total: -7.04 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.41 Total: -47.16 kcal Atomic # 8 Polarization: -3.35 SS G_CDS: 0.06 Total: -3.29 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.29 -7.25 -37.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.317 kcal (2) G-P(sol) polarization free energy of solvation -30.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds