Wall clock time and date at job start Mon Mar 30 2020 00:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46905 * 109.47089 * 2 1 4 4 C 1.46896 * 110.99921 * 287.94271 * 3 2 1 5 5 C 1.50698 * 109.46934 * 160.36190 * 4 3 2 6 6 H 1.08000 * 119.99905 * 4.66339 * 5 4 3 7 7 C 1.37878 * 120.00018 * 184.67150 * 5 4 3 8 8 N 1.31513 * 119.99917 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99964 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47409 * 59.99682 * 9 7 5 11 11 H 1.48499 * 109.46714 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46723 * 299.99128 * 9 7 5 13 13 C 1.46902 * 110.99848 * 163.98682 * 3 2 1 14 14 C 1.50695 * 109.47325 * 293.95533 * 13 3 2 15 15 N 1.30257 * 125.62105 * 90.02649 * 14 13 3 16 16 C 1.34473 * 108.70423 * 179.73468 * 15 14 13 17 17 C 1.34338 * 107.66537 * 0.39235 * 16 15 14 18 18 C 1.50697 * 126.44194 * 179.87827 * 17 16 15 19 19 C 1.53001 * 109.47468 * 59.70807 * 18 17 16 20 20 C 1.53003 * 109.47224 * 299.71245 * 18 17 16 21 21 C 1.52997 * 109.47205 * 179.71198 * 18 17 16 22 22 O 1.33970 * 125.62189 * 269.99929 * 14 13 3 23 23 H 1.09001 * 109.47147 * 59.31782 * 1 2 3 24 24 H 1.09003 * 109.46926 * 179.31237 * 1 2 3 25 25 H 1.08993 * 109.47690 * 299.31692 * 1 2 3 26 26 H 1.08997 * 109.47457 * 239.99881 * 2 1 3 27 27 H 1.09000 * 109.47104 * 119.99820 * 2 1 3 28 28 H 1.09002 * 109.47240 * 280.36367 * 4 3 2 29 29 H 1.09003 * 109.46915 * 40.36475 * 4 3 2 30 30 H 0.97002 * 119.99821 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.46644 * 173.95308 * 13 3 2 32 32 H 1.09008 * 109.46975 * 53.95586 * 13 3 2 33 33 H 1.08004 * 126.17083 * 180.26736 * 16 15 14 34 34 H 1.09003 * 109.47435 * 300.00333 * 19 18 17 35 35 H 1.08997 * 109.47422 * 179.97438 * 19 18 17 36 36 H 1.09009 * 109.46510 * 59.99987 * 19 18 17 37 37 H 1.08999 * 109.47659 * 180.02562 * 20 18 17 38 38 H 1.09003 * 109.47003 * 300.00073 * 20 18 17 39 39 H 1.09003 * 109.47505 * 59.99932 * 20 18 17 40 40 H 1.08998 * 109.47243 * 299.99801 * 21 18 17 41 41 H 1.09003 * 109.47042 * 59.99914 * 21 18 17 42 42 H 1.08997 * 109.47290 * 179.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7968 2.0222 -1.3047 5 6 1.8480 3.5200 -1.1475 6 1 2.1024 3.9543 -0.1919 7 6 1.5699 4.3361 -2.2235 8 7 1.2605 3.8072 -3.3872 9 14 1.6341 6.1928 -2.0288 10 1 3.0003 6.6001 -1.6134 11 1 1.2978 6.8381 -3.3233 12 1 0.6554 6.6162 -0.9952 13 6 3.4380 1.4419 0.3783 14 6 3.5931 1.0068 1.8127 15 7 3.7967 -0.2145 2.2172 16 6 3.8886 -0.2148 3.5588 17 6 3.7263 1.0509 3.9788 18 6 3.7493 1.5299 5.4074 19 6 5.1035 1.1953 6.0359 20 6 2.6362 0.8366 6.1957 21 6 3.5313 3.0439 5.4413 22 8 3.5450 1.8124 2.8821 23 1 -0.3633 0.5244 -0.8838 24 1 -0.3633 -1.0276 -0.0123 25 1 -0.3634 0.5031 0.8960 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.5716 1.7033 -2.0019 29 1 0.8195 1.7304 -1.6893 30 1 1.0652 4.3813 -4.1443 31 1 3.8030 2.4629 0.2668 32 1 4.0131 0.7779 -0.2671 33 1 4.0599 -1.0773 4.1858 34 1 5.2588 0.1167 6.0118 35 1 5.1203 1.5422 7.0691 36 1 5.8966 1.6892 5.4742 37 1 2.6524 1.1834 7.2290 38 1 1.6713 1.0749 5.7481 39 1 2.7914 -0.2420 6.1717 40 1 4.3243 3.5377 4.8798 41 1 2.5665 3.2822 4.9936 42 1 3.5475 3.3903 6.4746 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081040574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:57 Heat of formation + Delta-G solvation = -9.141315 kcal Electronic energy + Delta-G solvation = -20787.376507 eV Core-core repulsion = 17767.995092 eV Total energy + Delta-G solvation = -3019.381415 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.34574 -38.85360 -37.86853 -35.70732 -34.75811 -32.44709 -30.95957 -28.86304 -28.23259 -28.17309 -26.63335 -24.50622 -23.71078 -22.65165 -21.47351 -20.57862 -18.62952 -17.97839 -17.72346 -16.75180 -16.41069 -16.04778 -15.74755 -15.37745 -15.01430 -14.92845 -14.63099 -14.30217 -14.15467 -13.45772 -13.34667 -13.18707 -13.10185 -12.95028 -12.74880 -12.64122 -12.62504 -12.50430 -12.38571 -12.26896 -12.11010 -12.00426 -11.89519 -11.62546 -11.39657 -11.30264 -10.58789 -9.63098 -9.16030 -8.18872 -6.28600 0.46966 1.42042 1.44525 1.52508 1.64389 1.73478 2.41337 2.98863 3.14427 3.35412 3.59719 3.83982 3.95058 4.04534 4.16032 4.20901 4.31154 4.42352 4.51874 4.65086 4.68964 4.73588 4.78643 4.83803 4.86670 4.88657 4.96098 4.97392 5.04414 5.10801 5.18455 5.22859 5.25151 5.30548 5.36239 5.37588 5.39738 5.65854 6.04418 6.22249 6.50142 6.79149 6.84561 7.40379 8.91392 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019745 B = 0.005115 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.775723 B = 5472.261955 C = 6315.000427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.046 3.954 3 N -0.540 5.540 4 C 0.209 3.791 5 C -0.524 4.524 6 H 0.058 0.942 7 C 0.008 3.992 8 N -0.931 5.931 9 Si 0.964 3.036 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.157 3.843 14 C 0.195 3.805 15 N -0.497 5.497 16 C -0.052 4.052 17 C -0.040 4.040 18 C 0.018 3.982 19 C -0.135 4.135 20 C -0.136 4.136 21 C -0.145 4.145 22 O -0.205 6.205 23 H 0.040 0.960 24 H 0.078 0.922 25 H 0.050 0.950 26 H 0.025 0.975 27 H 0.077 0.923 28 H -0.028 1.028 29 H 0.022 0.978 30 H 0.265 0.735 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.208 0.792 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.042 0.958 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.414 -6.327 19.678 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.082 4.082 3 N -0.266 5.266 4 C 0.083 3.917 5 C -0.562 4.562 6 H 0.077 0.923 7 C -0.191 4.191 8 N -0.571 5.571 9 Si 0.789 3.211 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.197 1.197 13 C 0.028 3.972 14 C -0.012 4.012 15 N -0.228 5.228 16 C -0.190 4.190 17 C -0.093 4.093 18 C 0.017 3.983 19 C -0.192 4.192 20 C -0.193 4.193 21 C -0.202 4.202 22 O -0.091 6.091 23 H 0.059 0.941 24 H 0.097 0.903 25 H 0.070 0.930 26 H 0.043 0.957 27 H 0.095 0.905 28 H -0.010 1.010 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.225 0.775 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.063 0.937 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.136 -6.478 19.421 21.108 hybrid contribution 0.256 1.017 -0.876 1.366 sum 5.392 -5.462 18.545 20.070 Atomic orbital electron populations 1.21675 0.94370 1.01721 1.01423 1.22172 0.96839 0.88810 1.00364 1.62052 1.14884 1.16914 1.32745 1.19468 0.95044 0.93757 0.83404 1.21394 1.46758 0.91752 0.96331 0.92334 1.25809 0.94751 1.03790 0.94720 1.70059 1.48131 1.37179 1.01764 0.85513 0.78937 0.79292 0.77343 1.19301 1.20693 1.19660 1.20212 0.91368 1.02379 0.83268 1.26101 1.00346 0.83838 0.90879 1.70418 1.18729 1.20708 1.12942 1.23396 1.07163 0.98163 0.90283 1.24187 1.04929 0.90706 0.89483 1.19358 0.99230 0.96678 0.82984 1.21925 0.92911 1.02789 1.01547 1.21931 0.95919 1.01060 1.00417 1.21879 1.01348 0.93532 1.03463 1.84431 1.68215 1.40868 1.15587 0.94073 0.90296 0.93046 0.95688 0.90454 1.01038 0.95966 0.92615 0.88708 0.91075 0.77518 0.90963 0.88866 0.93260 0.88798 0.93735 0.90959 0.93354 0.93887 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 9.99 71.98 0.72 -4.16 16 2 C 0.05 1.82 5.55 86.30 0.48 2.30 16 3 N -0.54 -24.47 4.37 -905.36 -3.96 -28.43 16 4 C 0.21 11.12 4.59 85.56 0.39 11.51 16 5 C -0.52 -29.77 8.61 25.60 0.22 -29.55 16 6 H 0.06 3.31 7.66 -2.91 -0.02 3.29 16 7 C 0.01 0.44 5.46 84.66 0.46 0.90 16 8 N -0.93 -55.58 13.29 21.45 0.28 -55.29 16 9 Si 0.96 44.41 29.54 68.60 2.03 46.44 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 13 C 0.16 6.45 5.42 85.56 0.46 6.91 16 14 C 0.19 7.38 7.03 88.34 0.62 8.00 16 15 N -0.50 -17.39 10.16 -303.82 -3.09 -20.48 16 16 C -0.05 -1.43 11.24 83.40 0.94 -0.50 16 17 C -0.04 -1.11 5.70 24.79 0.14 -0.96 16 18 C 0.02 0.35 0.93 -52.93 -0.05 0.30 16 19 C -0.13 -1.86 8.35 71.98 0.60 -1.26 16 20 C -0.14 -2.05 8.36 71.98 0.60 -1.45 16 21 C -0.14 -2.92 8.06 71.98 0.58 -2.34 16 22 O -0.21 -7.46 10.24 -3.66 -0.04 -7.50 16 23 H 0.04 1.65 6.52 -2.39 -0.02 1.64 16 24 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.02 0.98 8.05 -2.39 -0.02 0.97 16 27 H 0.08 2.94 6.06 -2.39 -0.01 2.93 16 28 H -0.03 -1.59 8.00 -2.39 -0.02 -1.60 16 29 H 0.02 1.27 6.24 -2.39 -0.01 1.26 16 30 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 31 H 0.09 4.08 7.32 -2.39 -0.02 4.07 16 32 H 0.07 2.81 8.12 -2.38 -0.02 2.79 16 33 H 0.21 4.10 8.06 -2.91 -0.02 4.08 16 34 H 0.07 0.86 8.01 -2.39 -0.02 0.84 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 0.94 8.02 -2.39 -0.02 0.92 16 40 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 41 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -66.39 341.84 2.37 -64.02 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.97 Total: 11.53 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 6.17 Total: -10.29 kcal Atomic # 7 Polarization: -97.44 SS G_CDS: -6.76 Total: -104.20 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.04 Total: -7.50 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -66.39 2.37 -64.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.883 kcal (2) G-P(sol) polarization free energy of solvation -66.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds