Wall clock time and date at job start Mon Mar 30 2020 01:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 110.99891 * 2 1 4 4 C 1.52999 * 109.47028 * 293.95735 * 3 2 1 5 5 H 1.08997 * 109.47394 * 54.99653 * 4 3 2 6 6 C 1.47205 * 109.47362 * 294.99962 * 4 3 2 7 7 N 3.66500 * 112.02304 * 284.54574 * 2 1 3 8 8 C 1.53006 * 109.47054 * 175.00112 * 4 3 2 9 9 C 1.50698 * 109.47184 * 185.00283 * 8 4 3 10 10 H 1.08005 * 119.99819 * 359.97438 * 9 8 4 11 11 C 1.37875 * 120.00046 * 180.02562 * 9 8 4 12 12 N 1.31520 * 119.99809 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99912 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47123 * 90.00333 * 13 11 9 15 15 H 1.48506 * 109.46940 * 210.00455 * 13 11 9 16 16 H 1.48493 * 109.47121 * 329.99876 * 13 11 9 17 17 C 1.46899 * 111.00317 * 123.95755 * 2 1 3 18 18 C 1.52995 * 109.47272 * 66.04570 * 17 2 1 19 19 H 1.08998 * 109.52305 * 304.87670 * 18 17 2 20 20 C 1.53173 * 109.52222 * 184.68682 * 18 17 2 21 21 C 1.53178 * 109.03763 * 183.11609 * 20 18 17 22 22 C 1.53088 * 109.16554 * 56.97620 * 21 20 18 23 23 O 1.42896 * 109.41559 * 302.39515 * 22 21 20 24 24 C 1.42908 * 114.09827 * 61.15618 * 23 22 21 25 25 H 1.08994 * 109.47906 * 59.99987 * 1 2 3 26 26 H 1.09005 * 109.46960 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47027 * 299.99537 * 1 2 3 28 28 H 1.09003 * 109.47353 * 173.95734 * 3 2 1 29 29 H 1.08997 * 109.46829 * 53.95801 * 3 2 1 30 30 H 1.09001 * 109.47002 * 304.99688 * 8 4 3 31 31 H 1.08993 * 109.46955 * 65.00125 * 8 4 3 32 32 H 0.97004 * 119.99097 * 179.97438 * 12 11 9 33 33 H 1.09001 * 109.46931 * 186.04916 * 17 2 1 34 34 H 1.09004 * 109.46708 * 306.04407 * 17 2 1 35 35 H 1.08997 * 109.54497 * 302.97755 * 20 18 17 36 36 H 1.08994 * 109.54652 * 63.24771 * 20 18 17 37 37 H 1.09004 * 109.51770 * 297.06958 * 21 20 18 38 38 H 1.09001 * 109.57692 * 176.91758 * 21 20 18 39 39 H 1.09001 * 109.48212 * 182.40973 * 22 21 20 40 40 H 1.09001 * 109.48039 * 62.37984 * 22 21 20 41 41 H 1.09002 * 109.47912 * 178.85979 * 24 23 22 42 42 H 1.08995 * 109.47887 * 58.82598 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 -1.3182 5 1 0.5531 2.0058 -1.4691 6 6 2.3154 1.3778 -2.4304 7 7 2.8433 0.8533 -3.2887 8 6 2.0698 3.5225 -1.2689 9 6 1.6028 4.2289 -2.5154 10 1 1.0490 3.6870 -3.2678 11 6 1.8834 5.5667 -2.6958 12 7 1.4763 6.1831 -3.7840 13 14 2.8419 6.5037 -1.3948 14 1 4.2945 6.4144 -1.6898 15 1 2.4222 7.9282 -1.4008 16 1 2.5707 5.9136 -0.0594 17 6 1.9955 -0.7660 1.1375 18 6 1.6315 -2.2426 0.9702 19 1 0.5531 -2.3401 0.8453 20 6 2.0772 -3.0233 2.2104 21 6 1.7784 -4.5107 1.9986 22 6 2.4835 -4.9888 0.7267 23 8 2.0471 -4.2013 -0.3830 24 6 2.3424 -2.8083 -0.2619 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 3.0797 1.3445 0.1082 29 1 1.5611 1.9273 0.8309 30 1 1.6329 4.0032 -0.3936 31 1 3.1568 3.5745 -1.2073 32 1 1.6734 7.1244 -3.9107 33 1 3.0798 -0.6610 1.1755 34 1 1.5611 -0.3873 2.0627 35 1 3.1474 -2.8847 2.3635 36 1 1.5330 -2.6628 3.0833 37 1 0.7029 -4.6550 1.8951 38 1 2.1418 -5.0815 2.8531 39 1 2.2397 -6.0360 0.5476 40 1 3.5616 -4.8819 0.8467 41 1 1.9968 -2.2847 -1.1533 42 1 3.4186 -2.6729 -0.1549 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095395985.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:27 Heat of formation + Delta-G solvation = -34.357087 kcal Electronic energy + Delta-G solvation = -20419.302159 eV Core-core repulsion = 17398.827307 eV Total energy + Delta-G solvation = -3020.474853 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.74779 -38.05843 -35.91256 -34.13560 -33.42770 -32.12801 -31.11669 -27.69781 -27.13100 -25.15260 -24.87187 -22.57300 -21.46398 -20.97365 -20.12504 -16.91534 -16.81289 -16.42518 -16.22096 -15.60513 -15.18878 -14.87518 -14.56336 -14.34542 -13.93788 -13.50911 -13.18059 -12.95335 -12.81137 -12.52150 -12.47312 -12.15409 -12.02419 -11.66540 -11.64951 -11.40105 -11.36872 -11.23482 -10.91897 -10.87063 -10.71665 -10.41914 -10.23000 -9.97066 -9.73849 -9.57451 -9.32468 -8.62169 -8.28197 -6.11027 -4.11664 3.26112 3.33278 3.34069 3.68946 3.78855 3.79360 3.90004 4.37571 4.52271 4.60075 4.67574 4.72694 4.82437 4.97956 5.17593 5.20440 5.23857 5.26670 5.36641 5.43801 5.46322 5.50072 5.58327 5.64575 5.67053 5.70466 5.76616 5.82354 5.88465 5.99648 6.09310 6.17583 6.22814 6.31980 6.93486 7.04042 7.05705 7.12764 7.13690 7.63319 8.40474 8.56307 8.92817 9.48779 11.02114 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036606 B = 0.003794 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.725303 B = 7377.749096 C = 7697.896940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.545 5.545 3 C 0.060 3.940 4 C 0.020 3.980 5 H 0.106 0.894 6 C 0.253 3.747 7 N -0.471 5.471 8 C -0.005 4.005 9 C -0.527 4.527 10 H 0.074 0.926 11 C 0.071 3.929 12 N -0.897 5.897 13 Si 0.878 3.122 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.263 1.263 17 C 0.062 3.938 18 C -0.119 4.119 19 H 0.082 0.918 20 C -0.118 4.118 21 C -0.154 4.154 22 C 0.058 3.942 23 O -0.385 6.385 24 C 0.073 3.927 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.028 0.972 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.036 0.964 31 H 0.020 0.980 32 H 0.264 0.736 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.107 0.893 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.327 -17.567 16.270 23.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.269 5.269 3 C -0.069 4.069 4 C -0.002 4.002 5 H 0.124 0.876 6 C -0.065 4.065 7 N -0.147 5.147 8 C -0.044 4.044 9 C -0.565 4.565 10 H 0.092 0.908 11 C -0.131 4.131 12 N -0.535 5.535 13 Si 0.705 3.295 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.188 1.188 17 C -0.066 4.066 18 C -0.138 4.138 19 H 0.100 0.900 20 C -0.156 4.156 21 C -0.192 4.192 22 C -0.019 4.019 23 O -0.303 6.303 24 C -0.004 4.004 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.046 0.954 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.065 0.935 41 H 0.125 0.875 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.530 -18.486 14.283 23.367 hybrid contribution 0.137 1.455 1.899 2.396 sum 0.667 -17.032 16.182 23.503 Atomic orbital electron populations 1.22527 0.87268 1.01972 1.01398 1.61983 1.08266 1.14101 1.42502 1.22273 1.00699 0.87314 0.96572 1.18992 0.99727 0.95270 0.86210 0.87619 1.28693 0.92926 0.91296 0.93554 1.81002 1.10466 1.12124 1.11121 1.19643 0.97038 0.88603 0.99125 1.21028 1.36698 0.95080 1.03721 0.90766 1.24994 0.95233 0.97579 0.95317 1.69913 1.46217 1.10973 1.26391 0.86815 0.80670 0.79294 0.82736 1.20235 1.21269 1.18791 1.22080 1.00285 0.92435 0.91817 1.21829 1.01796 0.94396 0.95764 0.90010 1.21616 1.01500 0.94734 0.97723 1.22170 1.01874 0.96592 0.98563 1.22544 0.97515 0.95434 0.86393 1.87966 1.81613 1.19096 1.41646 1.22607 0.98246 0.80494 0.99003 0.90522 0.91402 0.95367 0.90309 0.92854 0.94595 0.96128 0.92566 0.90731 0.94405 0.91775 0.91563 0.91134 0.91096 0.89281 0.93452 0.87501 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.14 60.06 0.55 0.73 16 2 N -0.54 -6.69 3.97 -242.92 -0.96 -7.65 16 3 C 0.06 0.82 4.32 -3.82 -0.02 0.80 16 4 C 0.02 0.35 2.13 -93.40 -0.20 0.15 16 5 H 0.11 1.78 6.34 -51.93 -0.33 1.45 16 6 C 0.25 5.19 13.67 -20.76 -0.28 4.91 16 7 N -0.47 -10.66 18.54 42.15 0.78 -9.88 16 8 C -0.01 -0.11 3.49 -27.88 -0.10 -0.21 16 9 C -0.53 -14.18 9.15 -34.44 -0.32 -14.49 16 10 H 0.07 2.20 7.84 -52.48 -0.41 1.78 16 11 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 12 N -0.90 -27.07 13.96 55.43 0.77 -26.29 16 13 Si 0.88 20.58 27.47 -169.99 -4.67 15.91 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 17 C 0.06 0.63 4.35 -3.83 -0.02 0.61 16 18 C -0.12 -1.15 2.31 -90.49 -0.21 -1.36 16 19 H 0.08 0.84 6.27 -51.93 -0.33 0.51 16 20 C -0.12 -0.94 5.31 -26.55 -0.14 -1.08 16 21 C -0.15 -1.17 6.14 -26.59 -0.16 -1.33 16 22 C 0.06 0.52 6.84 37.20 0.25 0.77 16 23 O -0.38 -4.76 10.77 -35.23 -0.38 -5.14 16 24 C 0.07 0.86 5.98 37.20 0.22 1.08 16 25 H 0.08 0.92 6.37 -51.93 -0.33 0.59 16 26 H 0.07 0.70 6.21 -51.93 -0.32 0.37 16 27 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 1.05 7.93 -51.93 -0.41 0.64 16 29 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 30 H 0.04 0.72 7.20 -51.93 -0.37 0.35 16 31 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.07 0.75 7.93 -51.93 -0.41 0.34 16 34 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.11 1.47 7.83 -51.93 -0.41 1.06 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 334.93 15.07 5.05 5.05 Total: -1.00 -31.35 334.93 -7.03 -38.38 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -7.11 Total: -2.83 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -0.51 Total: -7.53 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.59 Total: -43.83 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.38 Total: -5.14 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.67 Total: 15.91 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.35 -7.03 -38.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095395985.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.021 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds