Wall clock time and date at job start Mon Mar 30 2020 01:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 110.99891 * 2 1 4 4 C 1.52999 * 109.47028 * 293.95735 * 3 2 1 5 5 H 1.08997 * 109.47394 * 54.99653 * 4 3 2 6 6 C 1.47205 * 109.47362 * 294.99962 * 4 3 2 7 7 N 3.66500 * 112.02304 * 284.54574 * 2 1 3 8 8 C 1.53006 * 109.47054 * 175.00112 * 4 3 2 9 9 C 1.50698 * 109.47184 * 185.00283 * 8 4 3 10 10 H 1.08005 * 119.99819 * 359.97438 * 9 8 4 11 11 C 1.37875 * 120.00046 * 180.02562 * 9 8 4 12 12 N 1.31520 * 119.99809 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99912 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47123 * 90.00333 * 13 11 9 15 15 H 1.48506 * 109.46940 * 210.00455 * 13 11 9 16 16 H 1.48493 * 109.47121 * 329.99876 * 13 11 9 17 17 C 1.46899 * 111.00317 * 123.95755 * 2 1 3 18 18 C 1.52995 * 109.47272 * 66.04570 * 17 2 1 19 19 H 1.08998 * 109.52305 * 304.87670 * 18 17 2 20 20 C 1.53173 * 109.52222 * 184.68682 * 18 17 2 21 21 C 1.53178 * 109.03763 * 183.11609 * 20 18 17 22 22 C 1.53088 * 109.16554 * 56.97620 * 21 20 18 23 23 O 1.42896 * 109.41559 * 302.39515 * 22 21 20 24 24 C 1.42908 * 114.09827 * 61.15618 * 23 22 21 25 25 H 1.08994 * 109.47906 * 59.99987 * 1 2 3 26 26 H 1.09005 * 109.46960 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47027 * 299.99537 * 1 2 3 28 28 H 1.09003 * 109.47353 * 173.95734 * 3 2 1 29 29 H 1.08997 * 109.46829 * 53.95801 * 3 2 1 30 30 H 1.09001 * 109.47002 * 304.99688 * 8 4 3 31 31 H 1.08993 * 109.46955 * 65.00125 * 8 4 3 32 32 H 0.97004 * 119.99097 * 179.97438 * 12 11 9 33 33 H 1.09001 * 109.46931 * 186.04916 * 17 2 1 34 34 H 1.09004 * 109.46708 * 306.04407 * 17 2 1 35 35 H 1.08997 * 109.54497 * 302.97755 * 20 18 17 36 36 H 1.08994 * 109.54652 * 63.24771 * 20 18 17 37 37 H 1.09004 * 109.51770 * 297.06958 * 21 20 18 38 38 H 1.09001 * 109.57692 * 176.91758 * 21 20 18 39 39 H 1.09001 * 109.48212 * 182.40973 * 22 21 20 40 40 H 1.09001 * 109.48039 * 62.37984 * 22 21 20 41 41 H 1.09002 * 109.47912 * 178.85979 * 24 23 22 42 42 H 1.08995 * 109.47887 * 58.82598 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 -1.3182 5 1 0.5531 2.0058 -1.4691 6 6 2.3154 1.3778 -2.4304 7 7 2.8433 0.8533 -3.2887 8 6 2.0698 3.5225 -1.2689 9 6 1.6028 4.2289 -2.5154 10 1 1.0490 3.6870 -3.2678 11 6 1.8834 5.5667 -2.6958 12 7 1.4763 6.1831 -3.7840 13 14 2.8419 6.5037 -1.3948 14 1 4.2945 6.4144 -1.6898 15 1 2.4222 7.9282 -1.4008 16 1 2.5707 5.9136 -0.0594 17 6 1.9955 -0.7660 1.1375 18 6 1.6315 -2.2426 0.9702 19 1 0.5531 -2.3401 0.8453 20 6 2.0772 -3.0233 2.2104 21 6 1.7784 -4.5107 1.9986 22 6 2.4835 -4.9888 0.7267 23 8 2.0471 -4.2013 -0.3830 24 6 2.3424 -2.8083 -0.2619 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 3.0797 1.3445 0.1082 29 1 1.5611 1.9273 0.8309 30 1 1.6329 4.0032 -0.3936 31 1 3.1568 3.5745 -1.2073 32 1 1.6734 7.1244 -3.9107 33 1 3.0798 -0.6610 1.1755 34 1 1.5611 -0.3873 2.0627 35 1 3.1474 -2.8847 2.3635 36 1 1.5330 -2.6628 3.0833 37 1 0.7029 -4.6550 1.8951 38 1 2.1418 -5.0815 2.8531 39 1 2.2397 -6.0360 0.5476 40 1 3.5616 -4.8819 0.8467 41 1 1.9968 -2.2847 -1.1533 42 1 3.4186 -2.6729 -0.1549 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095395985.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:27 Heat of formation + Delta-G solvation = -54.896734 kcal Electronic energy + Delta-G solvation = -20420.192825 eV Core-core repulsion = 17398.827307 eV Total energy + Delta-G solvation = -3021.365519 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.55964 -39.18314 -37.31054 -35.56840 -34.74232 -33.60548 -32.17118 -29.20606 -28.02095 -26.09461 -25.89651 -23.66805 -23.14098 -21.85063 -20.86904 -18.89913 -18.26390 -17.25090 -17.06605 -16.77367 -16.09465 -15.96727 -15.78305 -15.38069 -15.07537 -14.99228 -14.46867 -14.23554 -13.97043 -13.82722 -13.49889 -13.40175 -13.16055 -13.05287 -12.84510 -12.74610 -12.47560 -12.40646 -12.05967 -11.83823 -11.77329 -11.69271 -11.64158 -11.36262 -11.19526 -11.11085 -10.73140 -10.36228 -9.15866 -8.24121 -6.29906 1.43756 1.45001 1.56015 2.07266 2.14744 2.41619 2.94480 3.01414 3.12535 3.33958 3.81443 3.91733 3.98916 4.05001 4.10459 4.23950 4.34417 4.43301 4.51559 4.60959 4.62643 4.69133 4.73851 4.78106 4.79402 4.88872 4.92866 4.95129 5.01381 5.09704 5.13402 5.21081 5.26700 5.29978 5.44613 5.46837 5.64431 6.12389 6.21214 6.28071 6.32902 6.77847 6.92796 7.34541 8.92967 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036606 B = 0.003794 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.725303 B = 7377.749096 C = 7697.896940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.563 5.563 3 C 0.070 3.930 4 C 0.024 3.976 5 H 0.112 0.888 6 C 0.264 3.736 7 N -0.516 5.516 8 C -0.002 4.002 9 C -0.531 4.531 10 H 0.027 0.973 11 C 0.002 3.998 12 N -0.955 5.955 13 Si 0.949 3.051 14 H -0.277 1.277 15 H -0.290 1.290 16 H -0.222 1.222 17 C 0.066 3.934 18 C -0.111 4.111 19 H 0.076 0.924 20 C -0.115 4.115 21 C -0.150 4.150 22 C 0.049 3.951 23 O -0.412 6.412 24 C 0.075 3.925 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.045 0.955 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.026 0.974 32 H 0.265 0.735 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.053 0.947 41 H 0.078 0.922 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.228 -18.070 20.307 27.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.287 5.287 3 C -0.058 4.058 4 C 0.002 3.998 5 H 0.129 0.871 6 C -0.053 4.053 7 N -0.194 5.194 8 C -0.041 4.041 9 C -0.569 4.569 10 H 0.045 0.955 11 C -0.195 4.195 12 N -0.596 5.596 13 Si 0.772 3.228 14 H -0.202 1.202 15 H -0.216 1.216 16 H -0.144 1.144 17 C -0.062 4.062 18 C -0.130 4.130 19 H 0.094 0.906 20 C -0.152 4.152 21 C -0.188 4.188 22 C -0.027 4.027 23 O -0.331 6.331 24 C -0.001 4.001 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.077 -19.028 18.349 26.456 hybrid contribution -0.093 1.504 0.529 1.597 sum 0.983 -17.524 18.878 25.777 Atomic orbital electron populations 1.22508 0.86721 1.02396 1.01392 1.61893 1.08940 1.13601 1.44273 1.22135 1.01328 0.88063 0.94298 1.19112 0.99643 0.93531 0.87496 0.87056 1.29417 0.92031 0.90448 0.93370 1.80997 1.12122 1.13715 1.12569 1.19590 0.97303 0.90209 0.97033 1.21409 1.35412 0.95222 1.04864 0.95486 1.26066 0.96603 0.98957 0.97861 1.70102 1.48738 1.11417 1.29344 0.85683 0.78422 0.77416 0.81290 1.20226 1.21595 1.14385 1.22097 1.00449 0.92048 0.91568 1.21747 1.01118 0.94496 0.95640 0.90559 1.21616 1.02018 0.94552 0.97059 1.22148 1.01491 0.96707 0.98430 1.22784 0.98069 0.95622 0.86211 1.87920 1.82063 1.19503 1.43631 1.22485 0.98202 0.80490 0.98957 0.92072 0.90883 0.93690 0.89732 0.90224 0.91753 0.95547 0.92676 0.90490 0.92537 0.91227 0.90051 0.91549 0.88946 0.88162 0.92916 0.90374 0.93801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.14 127.69 1.17 1.52 16 2 N -0.56 -12.58 3.97 -922.47 -3.66 -16.24 16 3 C 0.07 1.69 4.32 86.30 0.37 2.06 16 4 C 0.02 0.81 2.13 -12.60 -0.03 0.78 16 5 H 0.11 3.66 6.34 -2.39 -0.02 3.64 16 6 C 0.26 10.90 13.67 89.44 1.22 12.12 16 7 N -0.52 -23.98 18.54 20.01 0.37 -23.61 16 8 C 0.00 -0.09 3.49 29.85 0.10 0.01 16 9 C -0.53 -28.81 9.15 25.60 0.23 -28.57 16 10 H 0.03 1.67 7.84 -2.91 -0.02 1.64 16 11 C 0.00 0.09 5.47 84.65 0.46 0.55 16 12 N -0.96 -59.49 13.96 21.45 0.30 -59.19 16 13 Si 0.95 41.33 27.47 68.60 1.88 43.21 16 14 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 15 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 16 H -0.22 -8.11 6.54 99.48 0.65 -7.46 16 17 C 0.07 1.13 4.35 86.30 0.38 1.51 16 18 C -0.11 -1.93 2.31 -10.71 -0.02 -1.96 16 19 H 0.08 1.42 6.27 -2.39 -0.01 1.41 16 20 C -0.11 -1.47 5.31 30.71 0.16 -1.31 16 21 C -0.15 -1.89 6.14 30.68 0.19 -1.70 16 22 C 0.05 0.81 6.84 72.01 0.49 1.30 16 23 O -0.41 -10.07 10.77 -148.98 -1.60 -11.68 16 24 C 0.08 1.74 5.98 72.01 0.43 2.17 16 25 H 0.06 1.41 6.37 -2.39 -0.02 1.40 16 26 H 0.07 1.39 6.21 -2.38 -0.01 1.38 16 27 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.08 1.96 7.93 -2.39 -0.02 1.94 16 29 H 0.08 1.54 8.12 -2.39 -0.02 1.52 16 30 H 0.06 2.28 7.20 -2.39 -0.02 2.26 16 31 H 0.03 1.04 7.57 -2.39 -0.02 1.03 16 32 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 33 H 0.08 1.31 7.93 -2.39 -0.02 1.29 16 34 H 0.06 0.80 8.12 -2.39 -0.02 0.78 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 40 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.08 2.22 7.83 -2.39 -0.02 2.20 16 42 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -70.83 334.93 3.38 -67.45 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.93 Total: 11.56 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 5.16 Total: -11.51 kcal Atomic # 7 Polarization: -96.05 SS G_CDS: -2.99 Total: -99.04 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -1.60 Total: -11.68 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 1.88 Total: 43.21 kcal Total: -70.83 3.38 -67.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095395985.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.557 kcal (2) G-P(sol) polarization free energy of solvation -70.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds