Wall clock time and date at job start Mon Mar 30 2020 01:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 110.99832 * 2 1 4 4 C 1.52997 * 109.47325 * 293.95734 * 3 2 1 5 5 H 1.08996 * 109.46952 * 54.99956 * 4 3 2 6 6 C 1.47206 * 109.47168 * 294.99733 * 4 3 2 7 7 N 3.66500 * 112.02563 * 284.54793 * 2 1 3 8 8 C 1.53002 * 109.46817 * 175.00015 * 4 3 2 9 9 C 1.50703 * 109.46865 * 184.99692 * 8 4 3 10 10 H 1.08006 * 120.00033 * 0.02562 * 9 8 4 11 11 C 1.37878 * 120.00279 * 179.97438 * 9 8 4 12 12 N 1.31507 * 120.00530 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99615 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47222 * 90.00111 * 13 11 9 15 15 H 1.48502 * 109.47151 * 210.00363 * 13 11 9 16 16 H 1.48504 * 109.47412 * 330.00086 * 13 11 9 17 17 C 1.46893 * 111.00375 * 123.95661 * 2 1 3 18 18 C 1.53003 * 109.46981 * 66.04368 * 17 2 1 19 19 H 1.08997 * 109.48589 * 305.02787 * 18 17 2 20 20 C 1.53093 * 109.48301 * 184.99897 * 18 17 2 21 21 C 1.53175 * 109.16613 * 182.41232 * 20 18 17 22 22 C 1.53170 * 109.03572 * 56.97955 * 21 20 18 23 23 C 1.53087 * 109.16762 * 303.02198 * 22 21 20 24 24 O 1.42904 * 109.41429 * 57.60791 * 23 22 21 25 25 H 1.08999 * 109.47172 * 59.99722 * 1 2 3 26 26 H 1.09004 * 109.47207 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47190 * 299.99652 * 1 2 3 28 28 H 1.08998 * 109.46948 * 173.95631 * 3 2 1 29 29 H 1.09000 * 109.46862 * 53.95948 * 3 2 1 30 30 H 1.08997 * 109.47047 * 304.99674 * 8 4 3 31 31 H 1.08997 * 109.47298 * 65.00333 * 8 4 3 32 32 H 0.96994 * 120.00578 * 179.97438 * 12 11 9 33 33 H 1.09001 * 109.47609 * 186.04296 * 17 2 1 34 34 H 1.08998 * 109.47342 * 306.05080 * 17 2 1 35 35 H 1.08996 * 109.52361 * 302.32020 * 20 18 17 36 36 H 1.09007 * 109.51745 * 62.44289 * 20 18 17 37 37 H 1.09003 * 109.54540 * 176.85239 * 21 20 18 38 38 H 1.09004 * 109.53904 * 297.11794 * 21 20 18 39 39 H 1.08999 * 109.52260 * 62.92986 * 22 21 20 40 40 H 1.09008 * 109.52101 * 183.11437 * 22 21 20 41 41 H 1.09004 * 109.48472 * 177.59073 * 23 22 21 42 42 H 1.08999 * 109.48033 * 297.62742 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 -1.3182 5 1 0.5531 2.0059 -1.4689 6 6 2.3155 1.3779 -2.4304 7 7 2.8435 0.8534 -3.2886 8 6 2.0699 3.5225 -1.2687 9 6 1.6030 4.2290 -2.5153 10 1 1.0486 3.6873 -3.2675 11 6 1.8827 5.5671 -2.6953 12 7 1.4749 6.1837 -3.7829 13 14 2.8410 6.5040 -1.3941 14 1 4.2936 6.4157 -1.6896 15 1 2.4204 7.9283 -1.3993 16 1 2.5707 5.9131 -0.0588 17 6 1.9955 -0.7660 1.1375 18 6 1.6315 -2.2426 0.9702 19 1 0.5533 -2.3391 0.8426 20 6 2.0702 -3.0207 2.2135 21 6 1.7572 -4.5067 2.0132 22 6 2.4577 -4.9980 0.7428 23 6 2.0041 -4.1436 -0.4438 24 8 2.2966 -2.7701 -0.1794 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.0797 1.3445 0.1082 29 1 1.5611 1.9273 0.8310 30 1 1.6329 4.0032 -0.3934 31 1 3.1569 3.5746 -1.2072 32 1 1.6713 7.1251 -3.9093 33 1 3.0798 -0.6612 1.1755 34 1 1.5612 -0.3874 2.0627 35 1 3.1419 -2.8914 2.3647 36 1 1.5318 -2.6483 3.0850 37 1 2.1177 -5.0742 2.8712 38 1 0.6804 -4.6419 1.9113 39 1 3.5372 -4.9087 0.8643 40 1 2.1956 -6.0406 0.5623 41 1 2.5317 -4.4611 -1.3432 42 1 0.9308 -4.2651 -0.5898 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112559885.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:26 Heat of formation + Delta-G solvation = -31.424871 kcal Electronic energy + Delta-G solvation = -20419.211809 eV Core-core repulsion = 17398.864107 eV Total energy + Delta-G solvation = -3020.347702 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.68672 -37.89451 -35.63644 -33.75093 -33.62090 -32.29578 -31.21930 -27.78228 -27.44235 -25.43481 -24.13957 -22.43070 -21.40471 -20.85913 -20.42796 -16.86551 -16.78050 -16.50130 -16.14402 -15.53195 -15.02740 -14.71008 -14.53912 -14.33813 -13.96185 -13.39870 -13.19666 -12.92390 -12.79905 -12.43415 -12.28206 -12.24277 -11.91351 -11.64872 -11.62388 -11.37453 -11.29582 -11.22933 -11.15886 -10.87222 -10.71796 -10.37120 -10.17315 -9.92544 -9.69636 -9.45787 -9.28099 -8.58835 -8.16051 -6.07682 -4.07989 3.29057 3.36389 3.36742 3.70044 3.78119 3.89150 3.96425 4.40849 4.54102 4.59792 4.62613 4.80480 4.91216 4.95031 5.08822 5.19740 5.23435 5.27413 5.41060 5.45061 5.45337 5.52020 5.54471 5.63585 5.66125 5.74102 5.76270 5.82107 5.90071 5.93179 6.02794 6.09803 6.27712 6.37333 6.98265 7.08729 7.14902 7.17670 7.31137 7.67297 8.44490 8.66700 8.96488 9.52270 11.05533 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036749 B = 0.003815 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.742505 B = 7337.457838 C = 7659.217789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.536 5.536 3 C 0.060 3.940 4 C 0.021 3.979 5 H 0.105 0.895 6 C 0.253 3.747 7 N -0.470 5.470 8 C -0.005 4.005 9 C -0.526 4.526 10 H 0.074 0.926 11 C 0.071 3.929 12 N -0.898 5.898 13 Si 0.878 3.122 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.263 1.263 17 C 0.063 3.937 18 C 0.094 3.906 19 H 0.058 0.942 20 C -0.151 4.151 21 C -0.121 4.121 22 C -0.157 4.157 23 C 0.059 3.941 24 O -0.357 6.357 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.027 0.973 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.036 0.964 31 H 0.021 0.979 32 H 0.264 0.736 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.704 -18.870 16.075 24.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.259 5.259 3 C -0.068 4.068 4 C -0.001 4.001 5 H 0.123 0.877 6 C -0.064 4.064 7 N -0.146 5.146 8 C -0.044 4.044 9 C -0.564 4.564 10 H 0.092 0.908 11 C -0.131 4.131 12 N -0.536 5.536 13 Si 0.705 3.295 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.188 1.188 17 C -0.065 4.065 18 C 0.036 3.964 19 H 0.076 0.924 20 C -0.190 4.190 21 C -0.158 4.158 22 C -0.195 4.195 23 C -0.018 4.018 24 O -0.275 6.275 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.045 0.955 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.630 -19.599 14.134 24.172 hybrid contribution -0.185 1.013 1.761 2.040 sum -0.815 -18.586 15.896 24.470 Atomic orbital electron populations 1.22523 0.87580 1.01636 1.01345 1.61901 1.07781 1.13840 1.42407 1.22277 1.00797 0.87244 0.96502 1.18967 0.99631 0.95194 0.86292 0.87742 1.28636 0.92968 0.91291 0.93548 1.80979 1.10379 1.11915 1.11359 1.19645 0.97066 0.88653 0.99070 1.21039 1.36585 0.95042 1.03739 0.90772 1.24989 0.95247 0.97574 0.95324 1.69902 1.46315 1.10933 1.26452 0.86816 0.80692 0.79236 0.82779 1.20231 1.21309 1.18767 1.22107 1.01303 0.91288 0.91808 1.22138 0.96075 0.92774 0.85432 0.92389 1.22204 1.02666 0.95644 0.98462 1.21560 1.00478 0.95841 0.97934 1.22211 1.01458 0.99834 0.95991 1.22534 0.99642 0.82312 0.97306 1.88121 1.69527 1.24173 1.45695 0.90513 0.91790 0.95473 0.90256 0.92998 0.94611 0.96098 0.92596 0.89964 0.93395 0.90934 0.91034 0.91631 0.91955 0.91107 0.91194 0.89051 0.93579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.14 60.06 0.55 0.75 16 2 N -0.54 -7.34 4.41 -242.92 -1.07 -8.41 16 3 C 0.06 0.88 4.32 -3.82 -0.02 0.87 16 4 C 0.02 0.39 2.13 -93.40 -0.20 0.19 16 5 H 0.10 1.84 6.33 -51.93 -0.33 1.51 16 6 C 0.25 5.49 13.67 -20.76 -0.28 5.21 16 7 N -0.47 -11.22 18.54 42.15 0.78 -10.44 16 8 C -0.01 -0.12 3.49 -27.88 -0.10 -0.21 16 9 C -0.53 -14.38 9.15 -34.44 -0.32 -14.70 16 10 H 0.07 2.23 7.84 -52.48 -0.41 1.82 16 11 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 12 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 13 Si 0.88 20.84 27.47 -169.99 -4.67 16.17 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 17 C 0.06 0.71 4.62 -3.83 -0.02 0.69 16 18 C 0.09 1.00 2.60 -26.68 -0.07 0.93 16 19 H 0.06 0.60 6.26 -51.93 -0.33 0.28 16 20 C -0.15 -1.26 5.42 -26.59 -0.14 -1.41 16 21 C -0.12 -0.90 6.03 -26.55 -0.16 -1.06 16 22 C -0.16 -1.27 6.13 -26.60 -0.16 -1.43 16 23 C 0.06 0.60 6.84 37.20 0.25 0.86 16 24 O -0.36 -4.76 10.35 -35.23 -0.36 -5.13 16 25 H 0.08 0.98 6.37 -51.93 -0.33 0.65 16 26 H 0.06 0.69 6.21 -51.93 -0.32 0.37 16 27 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 1.15 7.93 -51.93 -0.41 0.74 16 29 H 0.05 0.66 8.12 -51.93 -0.42 0.24 16 30 H 0.04 0.73 7.20 -51.93 -0.37 0.36 16 31 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.08 0.97 7.93 -51.93 -0.41 0.56 16 34 H 0.05 0.45 8.12 -51.93 -0.42 0.03 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 335.98 15.07 5.06 5.06 Total: -1.00 -32.63 335.98 -7.37 -40.00 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -7.12 Total: -3.28 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -0.76 Total: -7.40 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.48 Total: -45.43 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.36 Total: -5.13 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.63 -7.37 -40.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112559885.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.573 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds