Wall clock time and date at job start Mon Mar 30 2020 01:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 110.99832 * 2 1 4 4 C 1.52997 * 109.47325 * 293.95734 * 3 2 1 5 5 H 1.08996 * 109.46952 * 54.99956 * 4 3 2 6 6 C 1.47206 * 109.47168 * 294.99733 * 4 3 2 7 7 N 3.66500 * 112.02563 * 284.54793 * 2 1 3 8 8 C 1.53002 * 109.46817 * 175.00015 * 4 3 2 9 9 C 1.50703 * 109.46865 * 184.99692 * 8 4 3 10 10 H 1.08006 * 120.00033 * 0.02562 * 9 8 4 11 11 C 1.37878 * 120.00279 * 179.97438 * 9 8 4 12 12 N 1.31507 * 120.00530 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99615 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47222 * 90.00111 * 13 11 9 15 15 H 1.48502 * 109.47151 * 210.00363 * 13 11 9 16 16 H 1.48504 * 109.47412 * 330.00086 * 13 11 9 17 17 C 1.46893 * 111.00375 * 123.95661 * 2 1 3 18 18 C 1.53003 * 109.46981 * 66.04368 * 17 2 1 19 19 H 1.08997 * 109.48589 * 305.02787 * 18 17 2 20 20 C 1.53093 * 109.48301 * 184.99897 * 18 17 2 21 21 C 1.53175 * 109.16613 * 182.41232 * 20 18 17 22 22 C 1.53170 * 109.03572 * 56.97955 * 21 20 18 23 23 C 1.53087 * 109.16762 * 303.02198 * 22 21 20 24 24 O 1.42904 * 109.41429 * 57.60791 * 23 22 21 25 25 H 1.08999 * 109.47172 * 59.99722 * 1 2 3 26 26 H 1.09004 * 109.47207 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47190 * 299.99652 * 1 2 3 28 28 H 1.08998 * 109.46948 * 173.95631 * 3 2 1 29 29 H 1.09000 * 109.46862 * 53.95948 * 3 2 1 30 30 H 1.08997 * 109.47047 * 304.99674 * 8 4 3 31 31 H 1.08997 * 109.47298 * 65.00333 * 8 4 3 32 32 H 0.96994 * 120.00578 * 179.97438 * 12 11 9 33 33 H 1.09001 * 109.47609 * 186.04296 * 17 2 1 34 34 H 1.08998 * 109.47342 * 306.05080 * 17 2 1 35 35 H 1.08996 * 109.52361 * 302.32020 * 20 18 17 36 36 H 1.09007 * 109.51745 * 62.44289 * 20 18 17 37 37 H 1.09003 * 109.54540 * 176.85239 * 21 20 18 38 38 H 1.09004 * 109.53904 * 297.11794 * 21 20 18 39 39 H 1.08999 * 109.52260 * 62.92986 * 22 21 20 40 40 H 1.09008 * 109.52101 * 183.11437 * 22 21 20 41 41 H 1.09004 * 109.48472 * 177.59073 * 23 22 21 42 42 H 1.08999 * 109.48033 * 297.62742 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 -1.3182 5 1 0.5531 2.0059 -1.4689 6 6 2.3155 1.3779 -2.4304 7 7 2.8435 0.8534 -3.2886 8 6 2.0699 3.5225 -1.2687 9 6 1.6030 4.2290 -2.5153 10 1 1.0486 3.6873 -3.2675 11 6 1.8827 5.5671 -2.6953 12 7 1.4749 6.1837 -3.7829 13 14 2.8410 6.5040 -1.3941 14 1 4.2936 6.4157 -1.6896 15 1 2.4204 7.9283 -1.3993 16 1 2.5707 5.9131 -0.0588 17 6 1.9955 -0.7660 1.1375 18 6 1.6315 -2.2426 0.9702 19 1 0.5533 -2.3391 0.8426 20 6 2.0702 -3.0207 2.2135 21 6 1.7572 -4.5067 2.0132 22 6 2.4577 -4.9980 0.7428 23 6 2.0041 -4.1436 -0.4438 24 8 2.2966 -2.7701 -0.1794 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.0797 1.3445 0.1082 29 1 1.5611 1.9273 0.8310 30 1 1.6329 4.0032 -0.3934 31 1 3.1569 3.5746 -1.2072 32 1 1.6713 7.1251 -3.9093 33 1 3.0798 -0.6612 1.1755 34 1 1.5612 -0.3874 2.0627 35 1 3.1419 -2.8914 2.3647 36 1 1.5318 -2.6483 3.0850 37 1 2.1177 -5.0742 2.8712 38 1 0.6804 -4.6419 1.9113 39 1 3.5372 -4.9087 0.8643 40 1 2.1956 -6.0406 0.5623 41 1 2.5317 -4.4611 -1.3432 42 1 0.9308 -4.2651 -0.5898 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112559885.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:25 Heat of formation + Delta-G solvation = -53.297313 kcal Electronic energy + Delta-G solvation = -20420.160270 eV Core-core repulsion = 17398.864107 eV Total energy + Delta-G solvation = -3021.296163 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49864 -39.10560 -37.12526 -35.44821 -34.46471 -33.89641 -32.36987 -29.30639 -28.29784 -26.63125 -24.99116 -23.58683 -23.10805 -21.82075 -21.11034 -18.89337 -18.27462 -17.35311 -16.99691 -16.69932 -16.11581 -15.89224 -15.53278 -15.30662 -15.16521 -14.91061 -14.53225 -14.28748 -13.87759 -13.80769 -13.49929 -13.31487 -13.13579 -13.03696 -12.84802 -12.74310 -12.52042 -12.40337 -12.07283 -11.88343 -11.78207 -11.71448 -11.67550 -11.44016 -11.27609 -10.97500 -10.72724 -10.24551 -9.10411 -8.23588 -6.29345 1.44146 1.45578 1.56582 2.08517 2.17117 2.42216 2.90903 2.98266 3.12919 3.35349 3.87063 3.96358 3.99069 4.06388 4.13899 4.20768 4.31856 4.36167 4.46544 4.56558 4.62824 4.67667 4.73309 4.75126 4.83112 4.86993 4.91881 4.95306 5.01238 5.10311 5.14794 5.18831 5.22657 5.26629 5.42231 5.46103 5.64659 6.13993 6.21288 6.29138 6.51010 6.78152 6.94594 7.34952 8.93532 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036749 B = 0.003815 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.742505 B = 7337.457838 C = 7659.217789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.560 5.560 3 C 0.071 3.929 4 C 0.025 3.975 5 H 0.112 0.888 6 C 0.263 3.737 7 N -0.518 5.518 8 C -0.002 4.002 9 C -0.531 4.531 10 H 0.027 0.973 11 C 0.002 3.998 12 N -0.955 5.955 13 Si 0.949 3.051 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.221 1.221 17 C 0.064 3.936 18 C 0.091 3.909 19 H 0.060 0.940 20 C -0.146 4.146 21 C -0.120 4.120 22 C -0.152 4.152 23 C 0.053 3.947 24 O -0.393 6.393 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.025 0.975 32 H 0.265 0.735 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.653 -19.463 19.911 27.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.285 5.285 3 C -0.058 4.058 4 C 0.003 3.997 5 H 0.130 0.870 6 C -0.053 4.053 7 N -0.195 5.195 8 C -0.041 4.041 9 C -0.569 4.569 10 H 0.045 0.955 11 C -0.194 4.194 12 N -0.596 5.596 13 Si 0.772 3.228 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.144 1.144 17 C -0.063 4.063 18 C 0.033 3.967 19 H 0.078 0.922 20 C -0.185 4.185 21 C -0.157 4.157 22 C -0.190 4.190 23 C -0.024 4.024 24 O -0.313 6.313 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.589 -20.231 17.997 27.084 hybrid contribution -0.268 1.128 0.453 1.244 sum -0.857 -19.104 18.450 26.573 Atomic orbital electron populations 1.22517 0.86661 1.02252 1.01530 1.61803 1.08839 1.13441 1.44375 1.22136 1.01159 0.88047 0.94454 1.19113 0.99615 0.93551 0.87409 0.86993 1.29433 0.92055 0.90422 0.93388 1.80970 1.12087 1.13584 1.12892 1.19591 0.97255 0.90118 0.97130 1.21403 1.35428 0.95220 1.04856 0.95492 1.26058 0.96577 0.98919 0.97887 1.70087 1.48731 1.11408 1.29362 0.85683 0.78393 0.77434 0.81308 1.20300 1.21477 1.14366 1.22171 1.00868 0.91373 0.91923 1.22270 0.96017 0.92709 0.85703 0.92184 1.22167 1.02480 0.95936 0.97870 1.21584 1.00809 0.95418 0.97919 1.22165 1.01021 1.00295 0.95526 1.22655 0.99900 0.81647 0.98204 1.88064 1.70358 1.25710 1.47144 0.92125 0.91077 0.93331 0.90189 0.89975 0.91605 0.95669 0.92650 0.90818 0.90768 0.91534 0.89152 0.90177 0.91338 0.91865 0.89598 0.89662 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.14 127.69 1.17 1.55 16 2 N -0.56 -14.10 4.41 -922.46 -4.07 -18.17 16 3 C 0.07 1.85 4.32 86.30 0.37 2.22 16 4 C 0.02 0.88 2.13 -12.60 -0.03 0.86 16 5 H 0.11 3.83 6.33 -2.39 -0.02 3.82 16 6 C 0.26 11.52 13.67 89.44 1.22 12.74 16 7 N -0.52 -25.34 18.54 20.01 0.37 -24.97 16 8 C 0.00 -0.08 3.49 29.85 0.10 0.02 16 9 C -0.53 -29.28 9.15 25.60 0.23 -29.04 16 10 H 0.03 1.69 7.84 -2.91 -0.02 1.66 16 11 C 0.00 0.12 5.47 84.66 0.46 0.58 16 12 N -0.96 -59.92 13.96 21.45 0.30 -59.62 16 13 Si 0.95 41.85 27.47 68.60 1.88 43.74 16 14 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 15 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 16 H -0.22 -8.23 6.54 99.48 0.65 -7.58 16 17 C 0.06 1.28 4.62 86.31 0.40 1.67 16 18 C 0.09 1.76 2.60 30.63 0.08 1.84 16 19 H 0.06 1.12 6.26 -2.39 -0.01 1.10 16 20 C -0.15 -2.05 5.42 30.68 0.17 -1.88 16 21 C -0.12 -1.48 6.03 30.71 0.19 -1.29 16 22 C -0.15 -2.22 6.13 30.68 0.19 -2.04 16 23 C 0.05 1.04 6.84 72.01 0.49 1.54 16 24 O -0.39 -10.28 10.35 -148.98 -1.54 -11.82 16 25 H 0.06 1.48 6.37 -2.39 -0.02 1.46 16 26 H 0.07 1.40 6.21 -2.38 -0.01 1.39 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 2.10 7.93 -2.39 -0.02 2.08 16 29 H 0.08 1.69 8.12 -2.39 -0.02 1.67 16 30 H 0.07 2.39 7.20 -2.39 -0.02 2.37 16 31 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 32 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 33 H 0.07 1.59 7.93 -2.39 -0.02 1.57 16 34 H 0.07 1.09 8.12 -2.39 -0.02 1.07 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 40 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -73.38 335.98 2.91 -70.46 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.92 Total: 11.61 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 5.05 Total: -11.22 kcal Atomic # 7 Polarization: -99.36 SS G_CDS: -3.40 Total: -102.76 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -1.54 Total: -11.82 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.88 Total: 43.74 kcal Total: -73.38 2.91 -70.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112559885.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.163 kcal (2) G-P(sol) polarization free energy of solvation -73.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds