Wall clock time and date at job start Mon Mar 30 2020 01:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 110.99806 * 2 1 4 4 C 1.53007 * 109.46819 * 160.26467 * 3 2 1 5 5 H 1.08996 * 109.46841 * 55.45683 * 4 3 2 6 6 C 1.47200 * 109.46824 * 295.45406 * 4 3 2 7 7 N 3.65824 * 124.14444 * 79.05809 * 2 1 3 8 8 C 1.53004 * 109.46806 * 175.45684 * 4 3 2 9 9 C 1.50702 * 109.46613 * 184.99900 * 8 4 3 10 10 H 1.08001 * 120.00253 * 359.97438 * 9 8 4 11 11 C 1.37879 * 119.99628 * 179.97438 * 9 8 4 12 12 N 1.31512 * 120.00376 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99843 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47459 * 89.99783 * 13 11 9 15 15 H 1.48505 * 109.47106 * 210.00057 * 13 11 9 16 16 H 1.48506 * 109.46776 * 329.99861 * 13 11 9 17 17 C 1.46901 * 110.99724 * 236.04998 * 2 1 3 18 18 C 1.53003 * 109.46858 * 293.95147 * 17 2 1 19 19 H 1.08998 * 109.48321 * 59.97947 * 18 17 2 20 20 C 1.53093 * 109.47821 * 179.97438 * 18 17 2 21 21 C 1.53182 * 109.16266 * 177.59336 * 20 18 17 22 22 C 1.53179 * 109.10723 * 302.97644 * 21 20 18 23 23 C 1.53287 * 109.06437 * 56.94183 * 22 21 20 24 24 O 1.42892 * 109.48345 * 299.94398 * 18 17 2 25 25 H 1.09001 * 109.47107 * 189.33714 * 1 2 3 26 26 H 1.09003 * 109.46906 * 309.32957 * 1 2 3 27 27 H 1.08997 * 109.47603 * 69.33147 * 1 2 3 28 28 H 1.09003 * 109.47292 * 280.25862 * 3 2 1 29 29 H 1.09000 * 109.47367 * 40.26269 * 3 2 1 30 30 H 1.09000 * 109.46848 * 304.99602 * 8 4 3 31 31 H 1.08997 * 109.47514 * 64.99744 * 8 4 3 32 32 H 0.96997 * 120.00258 * 180.02562 * 12 11 9 33 33 H 1.08998 * 109.47004 * 173.95159 * 17 2 1 34 34 H 1.09000 * 109.47513 * 53.94987 * 17 2 1 35 35 H 1.08996 * 109.52043 * 57.69240 * 20 18 17 36 36 H 1.08994 * 109.58049 * 297.52817 * 20 18 17 37 37 H 1.08998 * 109.54389 * 62.88844 * 21 20 18 38 38 H 1.08996 * 109.54339 * 183.07174 * 21 20 18 39 39 H 1.09002 * 109.52590 * 176.93070 * 22 21 20 40 40 H 1.08999 * 109.52627 * 297.12144 * 22 21 20 41 41 H 1.09004 * 109.45426 * 182.44829 * 23 22 21 42 42 H 1.08999 * 109.45721 * 62.44172 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4458 1.3609 0.4871 5 1 4.0308 0.6776 -0.1284 6 6 3.4890 0.9171 1.8900 7 7 3.5223 0.5747 2.9726 8 6 4.0299 2.7710 0.3801 9 6 5.4922 2.7378 0.7429 10 1 5.9582 1.8044 1.0222 11 6 6.2352 3.8990 0.7181 12 7 5.6679 5.0355 0.3774 13 14 8.0480 3.8578 1.1670 14 1 8.8550 3.6092 -0.0545 15 1 8.4401 5.1603 1.7629 16 1 8.2899 2.7710 2.1498 17 6 1.9954 -0.7659 -1.1377 18 6 1.6314 -2.2426 -0.9704 19 1 0.5472 -2.3476 -0.9319 20 6 2.1793 -3.0409 -2.1562 21 6 1.8633 -4.5258 -1.9518 22 6 2.4595 -4.9863 -0.6180 23 6 1.9005 -4.1108 0.5092 24 8 2.2018 -2.7397 0.2417 25 1 -0.3633 -1.0141 0.1667 26 1 -0.3633 0.6513 0.7949 27 1 -0.3634 0.3627 -0.9615 28 1 1.9547 1.7762 -1.0112 29 1 1.3935 1.9917 0.6642 30 1 3.9171 3.1344 -0.6414 31 1 3.5012 3.4362 1.0628 32 1 6.1906 5.8524 0.3596 33 1 3.0796 -0.6610 -1.1757 34 1 1.5610 -0.3872 -2.0629 35 1 3.2587 -2.9037 -2.2201 36 1 1.7127 -2.6928 -3.0777 37 1 0.7830 -4.6700 -1.9375 38 1 2.2980 -5.1064 -2.7653 39 1 2.1922 -6.0279 -0.4398 40 1 3.5446 -4.8882 -0.6508 41 1 2.3537 -4.4047 1.4559 42 1 0.8198 -4.2403 0.5676 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112559886.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:28 Heat of formation + Delta-G solvation = -36.507343 kcal Electronic energy + Delta-G solvation = -20628.059433 eV Core-core repulsion = 17607.491338 eV Total energy + Delta-G solvation = -3020.568095 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.59086 -37.71687 -35.53170 -33.65319 -33.53305 -32.12546 -31.22479 -27.40390 -27.34378 -24.93806 -24.10372 -22.59720 -21.63707 -20.79853 -20.33134 -16.75142 -16.51743 -16.32707 -15.98683 -15.16205 -14.94211 -14.78472 -14.40307 -14.23817 -14.12501 -13.22936 -13.07790 -12.75989 -12.69971 -12.38186 -12.19025 -11.98467 -11.82480 -11.57917 -11.45737 -11.27952 -11.13475 -11.11258 -10.98758 -10.75151 -10.58763 -10.47784 -10.22336 -10.06510 -9.45974 -9.36565 -9.16205 -8.40791 -8.07903 -6.04854 -4.07287 3.32684 3.39406 3.45113 3.78862 3.89669 3.98227 4.07129 4.45776 4.63617 4.69599 4.71783 4.90188 5.03790 5.05418 5.16885 5.28432 5.31341 5.33532 5.48736 5.49259 5.53417 5.57513 5.64690 5.73547 5.77834 5.85844 5.87594 5.93621 5.99386 6.01597 6.09134 6.17754 6.46660 6.59534 7.19003 7.24689 7.41340 7.48455 7.59969 7.91244 8.29660 8.76088 8.97958 9.57886 11.06175 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022631 B = 0.004408 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.938028 B = 6349.897850 C = 6703.680547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.536 5.536 3 C 0.062 3.938 4 C 0.014 3.986 5 H 0.098 0.902 6 C 0.260 3.740 7 N -0.482 5.482 8 C 0.031 3.969 9 C -0.523 4.523 10 H 0.057 0.943 11 C 0.062 3.938 12 N -0.893 5.893 13 Si 0.890 3.110 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.273 1.273 17 C 0.058 3.942 18 C 0.096 3.904 19 H 0.053 0.947 20 C -0.153 4.153 21 C -0.120 4.120 22 C -0.158 4.158 23 C 0.059 3.941 24 O -0.353 6.353 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.023 0.977 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.036 0.964 31 H 0.025 0.975 32 H 0.262 0.738 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.262 -15.906 -8.076 21.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.259 5.259 3 C -0.067 4.067 4 C -0.008 4.008 5 H 0.116 0.884 6 C -0.057 4.057 7 N -0.159 5.159 8 C -0.008 4.008 9 C -0.561 4.561 10 H 0.075 0.925 11 C -0.140 4.140 12 N -0.532 5.532 13 Si 0.718 3.282 14 H -0.205 1.205 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.070 4.070 18 C 0.038 3.962 19 H 0.071 0.929 20 C -0.191 4.191 21 C -0.158 4.158 22 C -0.195 4.195 23 C -0.018 4.018 24 O -0.271 6.271 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.912 -16.341 -5.903 20.517 hybrid contribution 0.601 0.353 -1.134 1.332 sum -10.310 -15.988 -7.037 20.284 Atomic orbital electron populations 1.22396 0.87905 1.01906 1.00021 1.61908 1.07170 1.14118 1.42703 1.22267 0.95496 0.88235 1.00690 1.19183 0.95428 1.01855 0.84379 0.88424 1.28753 0.91179 0.91096 0.94634 1.80947 1.10429 1.11338 1.13185 1.19178 0.95823 0.87214 0.98590 1.21161 0.94321 0.94349 1.46301 0.92483 1.24945 0.98501 0.95452 0.95057 1.69938 1.36277 0.98802 1.48197 0.86607 0.85315 0.77501 0.78767 1.20520 1.21187 1.19811 1.22240 1.02066 0.91082 0.91563 1.22092 0.96338 0.93124 0.84670 0.92869 1.22212 1.02754 0.95419 0.98703 1.21554 1.00645 0.96038 0.97521 1.22246 1.01789 0.99692 0.95801 1.22555 0.98838 0.82526 0.97870 1.88154 1.74502 1.24417 1.40057 0.91871 0.91478 0.95880 0.92816 0.90360 0.94580 0.95630 0.92872 0.89267 0.93308 0.90638 0.91029 0.92129 0.91649 0.91289 0.90969 0.89142 0.93812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.23 60.07 0.55 0.86 16 2 N -0.54 -7.67 4.25 -242.91 -1.03 -8.70 16 3 C 0.06 0.96 4.37 -3.82 -0.02 0.94 16 4 C 0.01 0.26 2.27 -93.40 -0.21 0.05 16 5 H 0.10 1.83 6.67 -51.93 -0.35 1.48 16 6 C 0.26 5.80 13.66 -20.76 -0.28 5.51 16 7 N -0.48 -11.62 18.54 42.15 0.78 -10.83 16 8 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 9 C -0.52 -14.23 8.60 -34.44 -0.30 -14.53 16 10 H 0.06 1.56 7.59 -52.49 -0.40 1.16 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 13 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 17 C 0.06 0.73 4.48 -3.82 -0.02 0.71 16 18 C 0.10 1.11 2.51 -26.68 -0.07 1.04 16 19 H 0.05 0.58 6.67 -51.93 -0.35 0.23 16 20 C -0.15 -1.44 5.42 -26.59 -0.14 -1.58 16 21 C -0.12 -1.00 6.02 -26.54 -0.16 -1.16 16 22 C -0.16 -1.42 6.15 -26.49 -0.16 -1.58 16 23 C 0.06 0.65 6.85 37.31 0.26 0.90 16 24 O -0.35 -5.02 10.27 -35.23 -0.36 -5.39 16 25 H 0.06 0.70 6.73 -51.93 -0.35 0.35 16 26 H 0.07 0.79 7.84 -51.93 -0.41 0.38 16 27 H 0.02 0.23 8.07 -51.93 -0.42 -0.18 16 28 H 0.05 0.76 8.00 -51.93 -0.42 0.34 16 29 H 0.08 1.22 7.74 -51.93 -0.40 0.82 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.09 1.21 6.57 -51.93 -0.34 0.87 16 34 H 0.05 0.52 8.07 -51.93 -0.42 0.10 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 340.33 15.07 5.13 5.13 Total: -1.00 -31.54 340.33 -7.75 -39.29 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -7.21 Total: -4.39 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -0.77 Total: -6.59 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.49 Total: -44.66 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.36 Total: -5.39 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.54 -7.75 -39.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112559886.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.781 kcal (2) G-P(sol) polarization free energy of solvation -31.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds