Wall clock time and date at job start Mon Mar 30 2020 01:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 110.99806 * 2 1 4 4 C 1.53007 * 109.46819 * 160.26467 * 3 2 1 5 5 H 1.08996 * 109.46841 * 55.45683 * 4 3 2 6 6 C 1.47200 * 109.46824 * 295.45406 * 4 3 2 7 7 N 3.65824 * 124.14444 * 79.05809 * 2 1 3 8 8 C 1.53004 * 109.46806 * 175.45684 * 4 3 2 9 9 C 1.50702 * 109.46613 * 184.99900 * 8 4 3 10 10 H 1.08001 * 120.00253 * 359.97438 * 9 8 4 11 11 C 1.37879 * 119.99628 * 179.97438 * 9 8 4 12 12 N 1.31512 * 120.00376 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99843 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47459 * 89.99783 * 13 11 9 15 15 H 1.48505 * 109.47106 * 210.00057 * 13 11 9 16 16 H 1.48506 * 109.46776 * 329.99861 * 13 11 9 17 17 C 1.46901 * 110.99724 * 236.04998 * 2 1 3 18 18 C 1.53003 * 109.46858 * 293.95147 * 17 2 1 19 19 H 1.08998 * 109.48321 * 59.97947 * 18 17 2 20 20 C 1.53093 * 109.47821 * 179.97438 * 18 17 2 21 21 C 1.53182 * 109.16266 * 177.59336 * 20 18 17 22 22 C 1.53179 * 109.10723 * 302.97644 * 21 20 18 23 23 C 1.53287 * 109.06437 * 56.94183 * 22 21 20 24 24 O 1.42892 * 109.48345 * 299.94398 * 18 17 2 25 25 H 1.09001 * 109.47107 * 189.33714 * 1 2 3 26 26 H 1.09003 * 109.46906 * 309.32957 * 1 2 3 27 27 H 1.08997 * 109.47603 * 69.33147 * 1 2 3 28 28 H 1.09003 * 109.47292 * 280.25862 * 3 2 1 29 29 H 1.09000 * 109.47367 * 40.26269 * 3 2 1 30 30 H 1.09000 * 109.46848 * 304.99602 * 8 4 3 31 31 H 1.08997 * 109.47514 * 64.99744 * 8 4 3 32 32 H 0.96997 * 120.00258 * 180.02562 * 12 11 9 33 33 H 1.08998 * 109.47004 * 173.95159 * 17 2 1 34 34 H 1.09000 * 109.47513 * 53.94987 * 17 2 1 35 35 H 1.08996 * 109.52043 * 57.69240 * 20 18 17 36 36 H 1.08994 * 109.58049 * 297.52817 * 20 18 17 37 37 H 1.08998 * 109.54389 * 62.88844 * 21 20 18 38 38 H 1.08996 * 109.54339 * 183.07174 * 21 20 18 39 39 H 1.09002 * 109.52590 * 176.93070 * 22 21 20 40 40 H 1.08999 * 109.52627 * 297.12144 * 22 21 20 41 41 H 1.09004 * 109.45426 * 182.44829 * 23 22 21 42 42 H 1.08999 * 109.45721 * 62.44172 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4458 1.3609 0.4871 5 1 4.0308 0.6776 -0.1284 6 6 3.4890 0.9171 1.8900 7 7 3.5223 0.5747 2.9726 8 6 4.0299 2.7710 0.3801 9 6 5.4922 2.7378 0.7429 10 1 5.9582 1.8044 1.0222 11 6 6.2352 3.8990 0.7181 12 7 5.6679 5.0355 0.3774 13 14 8.0480 3.8578 1.1670 14 1 8.8550 3.6092 -0.0545 15 1 8.4401 5.1603 1.7629 16 1 8.2899 2.7710 2.1498 17 6 1.9954 -0.7659 -1.1377 18 6 1.6314 -2.2426 -0.9704 19 1 0.5472 -2.3476 -0.9319 20 6 2.1793 -3.0409 -2.1562 21 6 1.8633 -4.5258 -1.9518 22 6 2.4595 -4.9863 -0.6180 23 6 1.9005 -4.1108 0.5092 24 8 2.2018 -2.7397 0.2417 25 1 -0.3633 -1.0141 0.1667 26 1 -0.3633 0.6513 0.7949 27 1 -0.3634 0.3627 -0.9615 28 1 1.9547 1.7762 -1.0112 29 1 1.3935 1.9917 0.6642 30 1 3.9171 3.1344 -0.6414 31 1 3.5012 3.4362 1.0628 32 1 6.1906 5.8524 0.3596 33 1 3.0796 -0.6610 -1.1757 34 1 1.5610 -0.3872 -2.0629 35 1 3.2587 -2.9037 -2.2201 36 1 1.7127 -2.6928 -3.0777 37 1 0.7830 -4.6700 -1.9375 38 1 2.2980 -5.1064 -2.7653 39 1 2.1922 -6.0279 -0.4398 40 1 3.5446 -4.8882 -0.6508 41 1 2.3537 -4.4047 1.4559 42 1 0.8198 -4.2403 0.5676 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112559886.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:28 Heat of formation + Delta-G solvation = -55.921124 kcal Electronic energy + Delta-G solvation = -20628.901277 eV Core-core repulsion = 17607.491338 eV Total energy + Delta-G solvation = -3021.409939 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.48296 -38.99461 -37.09552 -35.46445 -34.44325 -33.66726 -32.41105 -29.00046 -28.26009 -26.27288 -25.09445 -23.76596 -23.39357 -21.83124 -21.08829 -18.51026 -18.23489 -17.29680 -16.97889 -16.57299 -16.21581 -15.90157 -15.61493 -15.25839 -15.16540 -14.59561 -14.27972 -14.24292 -14.01739 -13.69926 -13.47884 -13.24255 -13.04181 -12.94991 -12.92959 -12.64137 -12.57502 -12.42067 -12.33837 -12.12188 -11.90912 -11.68785 -11.53298 -11.34451 -11.17516 -10.96577 -10.53587 -10.22170 -9.11435 -8.18469 -6.26394 1.40190 1.42172 1.51927 2.12431 2.20959 2.42498 2.91228 3.03208 3.16863 3.41440 3.85762 3.96425 4.00784 4.07552 4.22497 4.25574 4.28618 4.43933 4.47103 4.57929 4.65379 4.70533 4.74814 4.82180 4.85769 4.87215 4.94646 4.99597 5.05392 5.10460 5.12628 5.17953 5.25543 5.44618 5.47642 5.63559 5.80434 6.10763 6.21831 6.26190 6.54686 6.84739 6.98943 7.41928 8.92484 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022631 B = 0.004408 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.938028 B = 6349.897850 C = 6703.680547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.556 5.556 3 C 0.072 3.928 4 C 0.024 3.976 5 H 0.108 0.892 6 C 0.269 3.731 7 N -0.518 5.518 8 C 0.039 3.961 9 C -0.539 4.539 10 H 0.050 0.950 11 C 0.014 3.986 12 N -0.923 5.923 13 Si 0.947 3.053 14 H -0.265 1.265 15 H -0.283 1.283 16 H -0.278 1.278 17 C 0.056 3.944 18 C 0.096 3.904 19 H 0.063 0.937 20 C -0.150 4.150 21 C -0.118 4.118 22 C -0.154 4.154 23 C 0.053 3.947 24 O -0.391 6.391 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.037 0.963 31 H 0.002 0.998 32 H 0.264 0.736 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.910 -17.003 -9.543 22.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.280 5.280 3 C -0.057 4.057 4 C 0.002 3.998 5 H 0.125 0.875 6 C -0.047 4.047 7 N -0.196 5.196 8 C 0.000 4.000 9 C -0.577 4.577 10 H 0.068 0.932 11 C -0.185 4.185 12 N -0.563 5.563 13 Si 0.773 3.227 14 H -0.190 1.190 15 H -0.208 1.208 16 H -0.203 1.203 17 C -0.071 4.071 18 C 0.038 3.962 19 H 0.081 0.919 20 C -0.188 4.188 21 C -0.156 4.156 22 C -0.191 4.191 23 C -0.024 4.024 24 O -0.310 6.310 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.020 0.980 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.102 0.898 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.568 -17.454 -7.382 22.202 hybrid contribution 0.781 0.674 -0.660 1.225 sum -10.786 -16.780 -8.043 21.508 Atomic orbital electron populations 1.22399 0.86149 1.02366 1.01003 1.61813 1.08856 1.13137 1.44213 1.22080 0.92595 0.89539 1.01448 1.19161 0.98344 0.99244 0.83077 0.87454 1.29329 0.90021 0.90230 0.95093 1.80935 1.11847 1.12492 1.14315 1.18995 0.94088 0.89242 0.97682 1.21531 0.96185 0.94056 1.45934 0.93215 1.25679 1.02408 0.95280 0.95159 1.70024 1.37729 0.99308 1.49198 0.85711 0.80955 0.77244 0.78769 1.19030 1.20806 1.20336 1.22322 1.01151 0.91737 0.91930 1.22185 0.96792 0.92619 0.84630 0.91916 1.22190 1.01998 0.96034 0.98556 1.21570 1.01370 0.95295 0.97316 1.22210 1.00916 1.00350 0.95664 1.22685 0.99567 0.81669 0.98432 1.88094 1.75306 1.26104 1.41506 0.91245 0.91924 0.93820 0.90804 0.90583 0.94521 0.97978 0.92672 0.90951 0.90957 0.91916 0.89162 0.91015 0.90361 0.89444 0.92265 0.89812 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 9.23 127.69 1.18 1.78 16 2 N -0.56 -15.07 4.25 -922.43 -3.92 -18.99 16 3 C 0.07 2.16 4.37 86.31 0.38 2.54 16 4 C 0.02 0.91 2.27 -12.60 -0.03 0.89 16 5 H 0.11 3.97 6.67 -2.39 -0.02 3.95 16 6 C 0.27 12.07 13.66 89.44 1.22 13.29 16 7 N -0.52 -25.27 18.54 20.01 0.37 -24.90 16 8 C 0.04 1.84 4.42 29.85 0.13 1.97 16 9 C -0.54 -29.45 8.60 25.60 0.22 -29.23 16 10 H 0.05 2.73 7.59 -2.91 -0.02 2.71 16 11 C 0.01 0.76 5.46 84.66 0.46 1.23 16 12 N -0.92 -53.53 13.29 21.45 0.28 -53.25 16 13 Si 0.95 44.28 29.54 68.60 2.03 46.30 16 14 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 16 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 17 C 0.06 1.30 4.48 86.30 0.39 1.69 16 18 C 0.10 2.03 2.51 30.63 0.08 2.11 16 19 H 0.06 1.20 6.67 -2.39 -0.02 1.18 16 20 C -0.15 -2.50 5.42 30.69 0.17 -2.34 16 21 C -0.12 -1.67 6.02 30.72 0.18 -1.49 16 22 C -0.15 -2.53 6.15 30.75 0.19 -2.34 16 23 C 0.05 1.12 6.85 72.08 0.49 1.61 16 24 O -0.39 -10.89 10.27 -148.98 -1.53 -12.42 16 25 H 0.07 1.39 6.73 -2.39 -0.02 1.38 16 26 H 0.06 1.38 7.84 -2.39 -0.02 1.36 16 27 H 0.04 0.75 8.07 -2.39 -0.02 0.73 16 28 H 0.07 1.91 8.00 -2.39 -0.02 1.90 16 29 H 0.08 2.30 7.74 -2.39 -0.02 2.28 16 30 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 33 H 0.07 1.90 6.57 -2.39 -0.02 1.89 16 34 H 0.07 1.32 8.07 -2.39 -0.02 1.30 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 42 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -67.25 340.33 3.27 -63.98 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.98 Total: 7.56 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 5.06 Total: -8.29 kcal Atomic # 7 Polarization: -93.87 SS G_CDS: -3.26 Total: -97.14 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -1.53 Total: -12.42 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -67.25 3.27 -63.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112559886.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.062 kcal (2) G-P(sol) polarization free energy of solvation -67.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds