Wall clock time and date at job start Mon Mar 30 2020 00:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46899 * 109.47085 * 2 1 4 4 C 1.46896 * 111.00391 * 199.58684 * 3 2 1 5 5 C 1.50705 * 109.46932 * 66.04937 * 4 3 2 6 6 H 1.07996 * 119.99946 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99924 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00193 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00053 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46868 * 59.99488 * 9 7 5 11 11 H 1.48498 * 109.46949 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46943 * 299.99710 * 9 7 5 13 13 C 1.46900 * 110.99922 * 75.63169 * 3 2 1 14 14 N 1.46502 * 109.47246 * 204.57993 * 13 3 2 15 15 C 1.46758 * 124.35374 * 79.63659 * 14 13 3 16 16 C 1.54479 * 105.47721 * 197.01459 * 15 14 13 17 17 H 1.09001 * 110.96389 * 92.70278 * 16 15 14 18 18 C 1.52994 * 110.97013 * 216.46307 * 16 15 14 19 19 C 1.52998 * 117.50294 * 248.61832 * 18 16 15 20 20 C 1.52996 * 60.00257 * 252.51485 * 19 18 16 21 21 C 1.54630 * 101.76319 * 334.58613 * 16 15 14 22 22 C 1.34419 * 124.34818 * 259.33528 * 14 13 3 23 23 O 1.21284 * 124.93814 * 359.57241 * 22 14 13 24 24 H 1.08996 * 109.46941 * 302.33209 * 1 2 3 25 25 H 1.09001 * 109.47280 * 62.33369 * 1 2 3 26 26 H 1.08998 * 109.46639 * 182.33691 * 1 2 3 27 27 H 1.09005 * 109.47185 * 240.00789 * 2 1 3 28 28 H 1.08997 * 109.47369 * 120.00192 * 2 1 3 29 29 H 1.09000 * 109.47014 * 186.04445 * 4 3 2 30 30 H 1.08998 * 109.47055 * 306.04853 * 4 3 2 31 31 H 0.96995 * 120.00251 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.46978 * 324.57757 * 13 3 2 33 33 H 1.08997 * 109.47255 * 84.58021 * 13 3 2 34 34 H 1.09002 * 110.24482 * 316.02145 * 15 14 13 35 35 H 1.09007 * 110.24540 * 77.92711 * 15 14 13 36 36 H 1.09004 * 115.54945 * 34.33672 * 18 16 15 37 37 H 1.09003 * 117.49609 * 0.02562 * 19 18 16 38 38 H 1.09002 * 117.49691 * 145.01985 * 19 18 16 39 39 H 1.08997 * 117.49515 * 252.50776 * 20 19 18 40 40 H 1.09001 * 117.49676 * 107.48703 * 20 19 18 41 41 H 1.08998 * 110.48749 * 143.47374 * 21 16 15 42 42 H 1.08993 * 110.48290 * 266.11866 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4133 1.4507 -0.4597 5 6 3.4836 1.0457 -1.9096 6 1 2.5831 0.7669 -2.4367 7 6 4.6976 1.0301 -2.5629 8 7 5.7943 1.3691 -1.9210 9 14 4.7849 0.5273 -4.3599 10 1 3.9518 1.4494 -5.1728 11 1 6.1937 0.5939 -4.8247 12 1 4.2784 -0.8604 -4.5108 13 6 1.8743 1.9947 1.3285 14 7 1.7974 3.4513 1.1916 15 6 0.5871 4.1837 0.8011 16 6 1.0741 5.5849 0.3703 17 1 1.2597 5.6204 -0.7033 18 6 0.0732 6.6645 0.7867 19 6 -0.6984 7.3791 -0.3245 20 6 0.4096 8.1143 0.4321 21 6 2.3941 5.7179 1.1647 22 6 2.8249 4.2892 1.4131 23 8 3.9364 3.9490 1.7593 24 1 -0.3633 0.5496 0.8683 25 1 -0.3634 0.4772 -0.9102 26 1 -0.3632 -1.0268 0.0419 27 1 1.8934 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.7849 2.4694 -0.3487 30 1 4.0250 0.7738 0.1367 31 1 6.6483 1.3584 -2.3807 32 1 0.9635 1.6256 1.8000 33 1 2.7344 1.7327 1.9447 34 1 0.0954 3.6823 -0.0326 35 1 -0.0950 4.2637 1.6476 36 1 -0.4486 6.4843 1.7266 37 1 -0.4932 7.0798 -1.3524 38 1 -1.7283 7.6690 -0.1160 39 1 0.1087 8.8880 1.1384 40 1 1.3440 8.2990 -0.0979 41 1 3.1423 6.2480 0.5754 42 1 2.2197 6.2298 2.1110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134751740.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:27 Heat of formation + Delta-G solvation = -4.260499 kcal Electronic energy + Delta-G solvation = -21017.651369 eV Core-core repulsion = 17998.481602 eV Total energy + Delta-G solvation = -3019.169767 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.15244 -37.64353 -36.71561 -35.22535 -32.61141 -31.56245 -29.71205 -27.39841 -26.97607 -24.45231 -22.78912 -22.43400 -22.32912 -20.19432 -20.12627 -18.91148 -16.61215 -16.32067 -16.02077 -15.65706 -14.82771 -14.66484 -14.43390 -14.01562 -13.71054 -13.39112 -13.25275 -12.80983 -12.59685 -12.30315 -12.05367 -11.80070 -11.69008 -11.62872 -11.55872 -11.20949 -10.98899 -10.80784 -10.69818 -10.49799 -10.39645 -10.17882 -10.08202 -9.79783 -9.23191 -9.17908 -8.42581 -8.28379 -7.29403 -5.94317 -3.97458 3.06181 3.35372 3.39826 3.42072 3.49097 3.66294 4.40629 4.46445 4.60920 4.68274 4.84000 5.00739 5.07126 5.22891 5.36685 5.39090 5.40275 5.52548 5.54280 5.68914 5.70719 5.78564 5.84090 5.91756 5.93981 6.00499 6.01137 6.05555 6.10898 6.28904 6.30818 6.63118 6.75727 6.92045 7.40825 7.42607 7.63786 7.84613 8.15455 8.23993 8.56870 8.72522 9.09911 9.65805 11.15703 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.016287 B = 0.005640 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.759589 B = 4963.745129 C = 5396.023234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.060 3.940 3 N -0.551 5.551 4 C 0.197 3.803 5 C -0.510 4.510 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.893 5.893 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.287 3.713 14 N -0.603 5.603 15 C 0.118 3.882 16 C -0.070 4.070 17 H 0.093 0.907 18 C -0.140 4.140 19 C -0.178 4.178 20 C -0.179 4.179 21 C -0.145 4.145 22 C 0.516 3.484 23 O -0.527 6.527 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.089 0.911 28 H 0.020 0.980 29 H 0.035 0.965 30 H -0.011 1.011 31 H 0.261 0.739 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.484 8.904 6.231 18.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.069 4.069 3 N -0.278 5.278 4 C 0.072 3.928 5 C -0.549 4.549 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.532 5.532 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.076 3.924 14 N -0.338 5.338 15 C -0.005 4.005 16 C -0.089 4.089 17 H 0.111 0.889 18 C -0.159 4.159 19 C -0.215 4.215 20 C -0.216 4.216 21 C -0.185 4.185 22 C 0.303 3.697 23 O -0.402 6.402 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.038 0.962 29 H 0.054 0.946 30 H 0.007 0.993 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.125 0.875 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.955 8.911 6.082 17.639 hybrid contribution 0.610 -0.672 -0.548 1.060 sum -13.346 8.239 5.534 16.632 Atomic orbital electron populations 1.21810 0.96562 1.00178 1.01506 1.21908 0.94053 0.89638 1.01303 1.61931 1.26221 1.16975 1.22678 1.19725 0.80641 0.97369 0.95044 1.21101 0.93132 1.45117 0.95557 0.92063 1.25003 0.95708 0.95674 0.98185 1.69988 0.98429 1.48186 1.36556 0.86606 0.76842 0.78998 0.85186 1.20296 1.21378 1.20311 1.21702 1.00356 0.78428 0.91949 1.48261 1.11417 1.06403 1.67694 1.21948 0.87519 0.91046 1.00030 1.21715 0.93339 0.93136 1.00727 0.88911 1.22203 1.01222 0.92744 0.99719 1.23016 0.96784 1.04348 0.97374 1.22936 1.00316 0.94496 1.03818 1.22332 0.98193 0.95715 1.02286 1.20816 0.84094 0.88296 0.76497 1.90755 1.20716 1.81542 1.47224 0.93826 0.92287 0.93309 0.89248 0.96208 0.94645 0.99303 0.92912 0.90791 0.92628 0.89914 0.91854 0.87520 0.88525 0.88929 0.88910 0.88592 0.88402 0.88316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 10.04 37.16 0.37 -1.73 16 2 C 0.06 1.13 5.48 -3.82 -0.02 1.11 16 3 N -0.55 -11.89 4.53 -239.98 -1.09 -12.98 16 4 C 0.20 5.40 4.57 -4.98 -0.02 5.37 16 5 C -0.51 -14.68 8.23 -34.44 -0.28 -14.97 16 6 H 0.06 1.72 7.31 -52.49 -0.38 1.33 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -27.84 13.29 55.43 0.74 -27.10 16 9 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.29 5.39 5.61 -63.31 -0.36 5.04 16 14 N -0.60 -10.54 3.08 -175.90 -0.54 -11.08 16 15 C 0.12 1.54 6.91 -3.13 -0.02 1.52 16 16 C -0.07 -0.83 3.28 -88.99 -0.29 -1.12 16 17 H 0.09 1.20 8.01 -51.93 -0.42 0.78 16 18 C -0.14 -1.27 5.03 -90.62 -0.46 -1.72 16 19 C -0.18 -1.48 10.20 -26.73 -0.27 -1.76 16 20 C -0.18 -1.49 10.13 -26.73 -0.27 -1.76 16 21 C -0.14 -2.00 6.31 -26.74 -0.17 -2.17 16 22 C 0.52 9.92 7.32 -10.86 -0.08 9.84 16 23 O -0.53 -12.77 17.01 5.55 0.09 -12.68 16 24 H 0.04 0.58 6.73 -51.93 -0.35 0.23 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 1.90 6.58 -51.93 -0.34 1.55 16 28 H 0.02 0.36 8.00 -51.93 -0.42 -0.06 16 29 H 0.04 1.09 6.81 -51.93 -0.35 0.73 16 30 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 31 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 32 H 0.07 1.15 6.43 -51.93 -0.33 0.81 16 33 H 0.06 1.17 7.49 -51.93 -0.39 0.79 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.67 7.73 -51.93 -0.40 0.27 16 36 H 0.11 0.86 7.90 -51.93 -0.41 0.45 16 37 H 0.10 0.84 8.11 -51.93 -0.42 0.42 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 42 H 0.10 1.14 7.90 -51.93 -0.41 0.73 16 LS Contribution 339.77 15.07 5.12 5.12 Total: -1.00 -33.99 339.77 -9.81 -43.80 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -7.14 Total: -1.38 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -1.97 Total: -0.80 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.89 Total: -51.16 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.09 Total: -12.68 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.99 -9.81 -43.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134751740.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.538 kcal (2) G-P(sol) polarization free energy of solvation -33.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds