Wall clock time and date at job start Mon Mar 30 2020 00:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46899 * 109.47085 * 2 1 4 4 C 1.46896 * 111.00391 * 199.58684 * 3 2 1 5 5 C 1.50705 * 109.46932 * 66.04937 * 4 3 2 6 6 H 1.07996 * 119.99946 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99924 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00193 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00053 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46868 * 59.99488 * 9 7 5 11 11 H 1.48498 * 109.46949 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46943 * 299.99710 * 9 7 5 13 13 C 1.46900 * 110.99922 * 75.63169 * 3 2 1 14 14 N 1.46502 * 109.47246 * 204.57993 * 13 3 2 15 15 C 1.46758 * 124.35374 * 79.63659 * 14 13 3 16 16 C 1.54479 * 105.47721 * 197.01459 * 15 14 13 17 17 H 1.09001 * 110.96389 * 92.70278 * 16 15 14 18 18 C 1.52994 * 110.97013 * 216.46307 * 16 15 14 19 19 C 1.52998 * 117.50294 * 248.61832 * 18 16 15 20 20 C 1.52996 * 60.00257 * 252.51485 * 19 18 16 21 21 C 1.54630 * 101.76319 * 334.58613 * 16 15 14 22 22 C 1.34419 * 124.34818 * 259.33528 * 14 13 3 23 23 O 1.21284 * 124.93814 * 359.57241 * 22 14 13 24 24 H 1.08996 * 109.46941 * 302.33209 * 1 2 3 25 25 H 1.09001 * 109.47280 * 62.33369 * 1 2 3 26 26 H 1.08998 * 109.46639 * 182.33691 * 1 2 3 27 27 H 1.09005 * 109.47185 * 240.00789 * 2 1 3 28 28 H 1.08997 * 109.47369 * 120.00192 * 2 1 3 29 29 H 1.09000 * 109.47014 * 186.04445 * 4 3 2 30 30 H 1.08998 * 109.47055 * 306.04853 * 4 3 2 31 31 H 0.96995 * 120.00251 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.46978 * 324.57757 * 13 3 2 33 33 H 1.08997 * 109.47255 * 84.58021 * 13 3 2 34 34 H 1.09002 * 110.24482 * 316.02145 * 15 14 13 35 35 H 1.09007 * 110.24540 * 77.92711 * 15 14 13 36 36 H 1.09004 * 115.54945 * 34.33672 * 18 16 15 37 37 H 1.09003 * 117.49609 * 0.02562 * 19 18 16 38 38 H 1.09002 * 117.49691 * 145.01985 * 19 18 16 39 39 H 1.08997 * 117.49515 * 252.50776 * 20 19 18 40 40 H 1.09001 * 117.49676 * 107.48703 * 20 19 18 41 41 H 1.08998 * 110.48749 * 143.47374 * 21 16 15 42 42 H 1.08993 * 110.48290 * 266.11866 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4133 1.4507 -0.4597 5 6 3.4836 1.0457 -1.9096 6 1 2.5831 0.7669 -2.4367 7 6 4.6976 1.0301 -2.5629 8 7 5.7943 1.3691 -1.9210 9 14 4.7849 0.5273 -4.3599 10 1 3.9518 1.4494 -5.1728 11 1 6.1937 0.5939 -4.8247 12 1 4.2784 -0.8604 -4.5108 13 6 1.8743 1.9947 1.3285 14 7 1.7974 3.4513 1.1916 15 6 0.5871 4.1837 0.8011 16 6 1.0741 5.5849 0.3703 17 1 1.2597 5.6204 -0.7033 18 6 0.0732 6.6645 0.7867 19 6 -0.6984 7.3791 -0.3245 20 6 0.4096 8.1143 0.4321 21 6 2.3941 5.7179 1.1647 22 6 2.8249 4.2892 1.4131 23 8 3.9364 3.9490 1.7593 24 1 -0.3633 0.5496 0.8683 25 1 -0.3634 0.4772 -0.9102 26 1 -0.3632 -1.0268 0.0419 27 1 1.8934 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.7849 2.4694 -0.3487 30 1 4.0250 0.7738 0.1367 31 1 6.6483 1.3584 -2.3807 32 1 0.9635 1.6256 1.8000 33 1 2.7344 1.7327 1.9447 34 1 0.0954 3.6823 -0.0326 35 1 -0.0950 4.2637 1.6476 36 1 -0.4486 6.4843 1.7266 37 1 -0.4932 7.0798 -1.3524 38 1 -1.7283 7.6690 -0.1160 39 1 0.1087 8.8880 1.1384 40 1 1.3440 8.2990 -0.0979 41 1 3.1423 6.2480 0.5754 42 1 2.2197 6.2298 2.1110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134751740.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:27 Heat of formation + Delta-G solvation = -27.065849 kcal Electronic energy + Delta-G solvation = -21018.640283 eV Core-core repulsion = 17998.481602 eV Total energy + Delta-G solvation = -3020.158681 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.49528 -38.70801 -38.39113 -36.54452 -34.80357 -32.81638 -31.36249 -28.88566 -28.58956 -26.09386 -24.34155 -23.71364 -23.07869 -21.82473 -21.03572 -20.39203 -18.61017 -17.87406 -17.38502 -16.91359 -16.53282 -16.01549 -15.77375 -15.67135 -15.04473 -14.89889 -14.49001 -14.31662 -14.10211 -13.84911 -13.76582 -13.25671 -12.87343 -12.77057 -12.66831 -12.65130 -12.54543 -12.36967 -12.26221 -11.90922 -11.81363 -11.66541 -11.33133 -11.15611 -10.97136 -10.65938 -10.56023 -9.80106 -9.13436 -8.21595 -6.35109 1.36437 1.41238 1.49274 1.56364 2.15652 2.37021 2.91681 3.09160 3.29745 3.41327 3.61099 3.77944 4.02405 4.11733 4.24626 4.28763 4.32462 4.36721 4.48654 4.53191 4.54628 4.67514 4.73990 4.78351 4.91845 4.95924 5.00812 5.08812 5.15445 5.17177 5.21335 5.29974 5.40195 5.43699 5.45780 5.57377 5.62760 5.99598 6.18662 6.34782 6.53881 6.82720 7.22552 7.35119 8.89285 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.016287 B = 0.005640 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.759589 B = 4963.745129 C = 5396.023234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.055 3.945 3 N -0.548 5.548 4 C 0.220 3.780 5 C -0.522 4.522 6 H 0.069 0.931 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.975 3.025 10 H -0.265 1.265 11 H -0.285 1.285 12 H -0.262 1.262 13 C 0.286 3.714 14 N -0.605 5.605 15 C 0.115 3.885 16 C -0.059 4.059 17 H 0.077 0.923 18 C -0.139 4.139 19 C -0.175 4.175 20 C -0.178 4.178 21 C -0.133 4.133 22 C 0.496 3.504 23 O -0.594 6.594 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.023 0.977 29 H -0.007 1.007 30 H -0.055 1.055 31 H 0.263 0.737 32 H 0.120 0.880 33 H 0.021 0.979 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.127 0.873 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.017 9.504 5.662 21.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 N -0.274 5.274 4 C 0.093 3.907 5 C -0.561 4.561 6 H 0.087 0.913 7 C -0.202 4.202 8 N -0.579 5.579 9 Si 0.799 3.201 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.187 1.187 13 C 0.075 3.925 14 N -0.338 5.338 15 C -0.006 4.006 16 C -0.078 4.078 17 H 0.095 0.905 18 C -0.157 4.157 19 C -0.212 4.212 20 C -0.215 4.215 21 C -0.173 4.173 22 C 0.285 3.715 23 O -0.475 6.475 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.042 0.958 29 H 0.011 0.989 30 H -0.038 1.038 31 H 0.072 0.928 32 H 0.138 0.862 33 H 0.039 0.961 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.145 0.855 37 H 0.106 0.894 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.573 9.517 5.507 20.730 hybrid contribution 1.693 -0.872 -0.315 1.930 sum -15.880 8.645 5.193 18.812 Atomic orbital electron populations 1.21688 0.92247 1.02272 1.02293 1.22023 0.97395 0.87720 1.00198 1.61948 1.22045 1.18999 1.24427 1.19220 0.83418 0.93516 0.94501 1.21429 0.93591 1.44899 0.96138 0.91299 1.26070 0.95081 0.95324 1.03707 1.70172 0.99208 1.49498 1.38977 0.85359 0.77055 0.79340 0.78382 1.19024 1.21091 1.18663 1.21768 1.00976 0.79563 0.90226 1.48465 1.12748 1.05954 1.66676 1.22274 0.86009 0.90808 1.01511 1.21640 0.92928 0.93737 0.99483 0.90480 1.22119 1.00839 0.91943 1.00833 1.23077 0.97674 1.03699 0.96714 1.23012 1.00112 0.94412 1.04009 1.22327 0.99051 0.91922 1.03998 1.21867 0.83427 0.90840 0.75370 1.90705 1.23469 1.83033 1.50258 0.91708 0.92608 0.90711 0.91975 0.95842 0.98903 1.03769 0.92843 0.86229 0.96102 0.90077 0.87960 0.85470 0.89381 0.87186 0.87254 0.89494 0.88918 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 10.04 71.98 0.72 -2.64 16 2 C 0.05 2.06 5.48 86.31 0.47 2.54 16 3 N -0.55 -24.16 4.53 -913.15 -4.13 -28.29 16 4 C 0.22 12.80 4.57 85.56 0.39 13.19 16 5 C -0.52 -31.04 8.23 25.60 0.21 -30.83 16 6 H 0.07 3.90 7.31 -2.91 -0.02 3.88 16 7 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 8 N -0.94 -61.13 13.29 21.45 0.28 -60.85 16 9 Si 0.98 45.96 29.54 68.60 2.03 47.99 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 12 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 13 C 0.29 10.89 5.61 170.81 0.96 11.85 16 14 N -0.61 -21.22 3.08 -829.03 -2.55 -23.77 16 15 C 0.12 2.75 6.91 86.83 0.60 3.35 16 16 C -0.06 -1.29 3.28 -9.74 -0.03 -1.33 16 17 H 0.08 1.94 8.01 -2.39 -0.02 1.92 16 18 C -0.14 -2.04 5.03 -10.80 -0.05 -2.09 16 19 C -0.17 -2.36 10.20 30.59 0.31 -2.05 16 20 C -0.18 -2.46 10.13 30.59 0.31 -2.15 16 21 C -0.13 -3.62 6.31 30.59 0.19 -3.42 16 22 C 0.50 19.86 7.32 87.90 0.64 20.50 16 23 O -0.59 -31.10 17.01 -3.04 -0.05 -31.15 16 24 H 0.06 1.45 6.73 -2.39 -0.02 1.43 16 25 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.06 2.67 6.58 -2.38 -0.02 2.65 16 28 H 0.02 0.86 8.00 -2.39 -0.02 0.84 16 29 H -0.01 -0.48 6.81 -2.39 -0.02 -0.49 16 30 H -0.06 -3.62 8.12 -2.39 -0.02 -3.64 16 31 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 32 H 0.12 3.43 6.43 -2.38 -0.02 3.42 16 33 H 0.02 0.94 7.49 -2.39 -0.02 0.92 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.10 1.71 7.73 -2.38 -0.02 1.69 16 36 H 0.13 1.43 7.90 -2.38 -0.02 1.41 16 37 H 0.09 1.36 8.11 -2.39 -0.02 1.34 16 38 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.13 2.72 7.90 -2.39 -0.02 2.70 16 Total: -1.00 -80.67 339.77 1.75 -78.92 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.98 Total: 10.03 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 5.19 Total: 7.13 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -6.40 Total: -112.92 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.05 Total: -31.15 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -80.67 1.75 -78.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134751740.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.859 kcal (2) G-P(sol) polarization free energy of solvation -80.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds