Wall clock time and date at job start Mon Mar 30 2020 00:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.46764 * 2 1 4 4 C 1.42899 * 113.99695 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47336 * 180.02562 * 4 3 2 6 6 H 1.09005 * 110.87342 * 57.38780 * 5 4 3 7 7 C 1.55139 * 110.99155 * 293.54353 * 5 4 3 8 8 C 1.54315 * 103.02316 * 206.25297 * 7 5 4 9 9 N 1.47443 * 107.23255 * 22.28267 * 8 7 5 10 10 C 1.46898 * 111.00043 * 123.25439 * 9 8 7 11 11 C 1.53002 * 109.46653 * 69.87629 * 10 9 8 12 12 H 1.09000 * 109.47312 * 55.00148 * 11 10 9 13 13 C 1.47196 * 109.47329 * 294.99669 * 11 10 9 14 14 N 8.51559 * 116.29688 * 333.78186 * 2 1 3 15 15 C 1.53005 * 109.47140 * 174.99749 * 11 10 9 16 16 C 1.50695 * 109.47088 * 184.99922 * 15 11 10 17 17 H 1.07995 * 120.00496 * 0.02562 * 16 15 11 18 18 C 1.37880 * 119.99572 * 180.02562 * 16 15 11 19 19 N 1.31511 * 120.00327 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99951 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 59.99744 * 20 18 16 22 22 H 1.48503 * 109.47261 * 299.99924 * 20 18 16 23 23 H 1.48500 * 109.47454 * 179.97438 * 20 18 16 24 24 C 1.47845 * 108.56637 * 0.98967 * 9 8 7 25 25 H 1.09001 * 109.47200 * 60.00038 * 1 2 3 26 26 H 1.08999 * 109.47541 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47402 * 299.99827 * 1 2 3 28 28 H 1.08998 * 109.47061 * 240.00560 * 2 1 3 29 29 H 1.09001 * 109.47200 * 119.99962 * 2 1 3 30 30 H 1.09003 * 109.47755 * 59.99666 * 4 3 2 31 31 H 1.09001 * 109.47321 * 299.99779 * 4 3 2 32 32 H 1.09008 * 110.70709 * 87.86658 * 7 5 4 33 33 H 1.09007 * 110.85382 * 324.71078 * 7 5 4 34 34 H 1.08995 * 109.88541 * 262.87718 * 8 7 5 35 35 H 1.08993 * 109.88771 * 141.68618 * 8 7 5 36 36 H 1.09001 * 109.47390 * 309.87597 * 10 9 8 37 37 H 1.09003 * 109.47405 * 189.87434 * 10 9 8 38 38 H 1.09002 * 109.46935 * 64.99887 * 15 11 10 39 39 H 1.08998 * 109.47061 * 305.00681 * 15 11 10 40 40 H 0.97006 * 119.99995 * 359.97438 * 19 18 16 41 41 H 1.09001 * 110.37530 * 94.73548 * 24 9 8 42 42 H 1.08996 * 110.37860 * 217.07490 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8253 2.9384 0.0001 6 1 3.3955 3.4547 0.8585 7 6 3.4090 3.6254 -1.3271 8 6 4.4159 4.7886 -1.4474 9 7 5.5910 4.4354 -0.6298 10 6 6.8178 4.4497 -1.4376 11 6 7.1624 5.8916 -1.8160 12 1 7.2296 6.4981 -0.9129 13 6 6.1120 6.4330 -2.6937 14 7 5.3026 6.8489 -3.3728 15 6 8.5046 5.9194 -2.5500 16 6 8.9031 7.3485 -2.8141 17 1 8.2634 8.1562 -2.4906 18 6 10.0846 7.6249 -3.4690 19 7 10.8635 6.6414 -3.8635 20 14 10.5790 9.3963 -3.7959 21 1 10.7058 10.1210 -2.5058 22 1 9.5429 10.0531 -4.6328 23 1 11.8817 9.4234 -4.5083 24 6 5.3654 3.1018 -0.0327 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8333 0.9767 -0.8908 31 1 3.8339 0.9765 0.8892 32 1 2.3888 4.0038 -1.2618 33 1 3.5108 2.9390 -2.1679 34 1 3.9664 5.7082 -1.0728 35 1 4.7131 4.9156 -2.4883 36 1 6.6634 3.8633 -2.3434 37 1 7.6372 4.0195 -0.8616 38 1 8.4122 5.3871 -3.4966 39 1 9.2650 5.4378 -1.9352 40 1 10.6069 5.7214 -3.6934 41 1 5.8161 2.3271 -0.6530 42 1 5.7725 3.0646 0.9777 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177039636.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:31 Heat of formation + Delta-G solvation = -32.654404 kcal Electronic energy + Delta-G solvation = -19988.325964 eV Core-core repulsion = 16967.924945 eV Total energy + Delta-G solvation = -3020.401019 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.62985 -38.12571 -36.40125 -34.23833 -33.12200 -31.74396 -30.38190 -29.37400 -26.56664 -24.71122 -23.34288 -23.07695 -22.10373 -20.71928 -20.29663 -17.34615 -17.02065 -16.73753 -16.40004 -15.67568 -15.58689 -14.36663 -14.09152 -14.01056 -13.74777 -13.52476 -13.35839 -12.99510 -12.81205 -12.64372 -12.36928 -12.24189 -12.12312 -11.77003 -11.59059 -11.40286 -11.20064 -11.09452 -10.94243 -10.78698 -10.66088 -10.55008 -10.28178 -10.14771 -9.87141 -9.84859 -8.66306 -8.40341 -8.27487 -6.42900 -4.13778 3.29720 3.43710 3.45972 3.53604 3.58965 3.64192 4.01287 4.49889 4.53118 4.65864 4.68647 4.71406 4.74178 4.89231 5.01905 5.08420 5.14404 5.27586 5.32665 5.35555 5.37423 5.47236 5.54795 5.55422 5.57941 5.70060 5.76932 5.85372 5.98240 6.00840 6.06128 6.24369 6.25556 6.41503 6.91008 6.99598 7.10640 7.11472 7.26258 8.04191 8.31705 8.41338 8.79777 9.57203 10.97890 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.050078 B = 0.003150 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.990119 B = 8885.902114 C = 9164.822709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.387 6.387 4 C 0.074 3.926 5 C -0.096 4.096 6 H 0.092 0.908 7 C -0.128 4.128 8 C 0.029 3.971 9 N -0.528 5.528 10 C 0.057 3.943 11 C 0.015 3.985 12 H 0.112 0.888 13 C 0.249 3.751 14 N -0.477 5.477 15 C 0.019 3.981 16 C -0.605 4.605 17 H 0.051 0.949 18 C 0.020 3.980 19 N -0.909 5.909 20 Si 1.066 2.934 21 H -0.286 1.286 22 H -0.288 1.288 23 H -0.282 1.282 24 C 0.051 3.949 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.039 0.961 37 H 0.092 0.908 38 H 0.014 0.986 39 H 0.030 0.970 40 H 0.269 0.731 41 H 0.048 0.952 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.617 -14.216 9.988 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.306 6.306 4 C -0.003 4.003 5 C -0.115 4.115 6 H 0.110 0.890 7 C -0.166 4.166 8 C -0.099 4.099 9 N -0.251 5.251 10 C -0.072 4.072 11 C -0.007 4.007 12 H 0.129 0.871 13 C -0.067 4.067 14 N -0.154 5.154 15 C -0.020 4.020 16 C -0.643 4.643 17 H 0.069 0.931 18 C -0.184 4.184 19 N -0.545 5.545 20 Si 0.894 3.106 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.207 1.207 24 C -0.077 4.077 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.111 0.889 38 H 0.032 0.968 39 H 0.048 0.952 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.699 -12.102 8.672 20.922 hybrid contribution -0.784 -1.904 0.242 2.073 sum -15.483 -14.006 8.914 22.701 Atomic orbital electron populations 1.21741 0.93775 1.02158 1.03197 1.22446 0.95611 0.83973 0.99960 1.87899 1.21130 1.26181 1.95403 1.22429 0.81245 0.96528 1.00122 1.22282 0.95592 0.94057 0.99551 0.88960 1.22751 0.99981 0.97318 0.96588 1.23189 0.90716 0.98473 0.97560 1.63647 1.02613 1.26202 1.32682 1.22418 0.92517 0.96196 0.96035 1.19148 0.91277 0.93972 0.96261 0.87066 1.29014 0.92310 0.92220 0.93121 1.81023 1.13368 1.09944 1.11043 1.19279 0.88807 0.98927 0.94964 1.21967 1.08720 0.91475 1.42162 0.93086 1.25797 0.93214 1.05973 0.93445 1.70809 1.38856 1.00599 1.44211 0.83576 0.76308 0.74087 0.76634 1.21203 1.21482 1.20694 1.22975 0.93986 0.90272 1.00489 0.91828 0.91184 0.91846 0.93528 0.93494 0.93328 0.93092 0.90592 0.91753 0.90572 0.91619 0.94234 0.88947 0.96757 0.95193 0.92084 0.93340 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.06 0.45 6.66 37.16 0.25 0.70 16 3 O -0.39 -4.11 10.20 -35.23 -0.36 -4.47 16 4 C 0.07 0.70 5.38 37.16 0.20 0.89 16 5 C -0.10 -1.03 3.32 -88.48 -0.29 -1.32 16 6 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 7 C -0.13 -1.58 6.27 -24.91 -0.16 -1.74 16 8 C 0.03 0.42 5.24 -2.84 -0.01 0.41 16 9 N -0.53 -7.43 5.16 -231.26 -1.19 -8.62 16 10 C 0.06 0.87 4.34 -3.82 -0.02 0.86 16 11 C 0.02 0.29 2.42 -93.40 -0.23 0.07 16 12 H 0.11 2.08 8.14 -51.93 -0.42 1.66 16 13 C 0.25 5.21 10.66 -20.78 -0.22 4.99 16 14 N -0.48 -10.57 17.69 42.13 0.75 -9.83 16 15 C 0.02 0.44 3.74 -27.88 -0.10 0.33 16 16 C -0.61 -16.46 8.60 -34.44 -0.30 -16.75 16 17 H 0.05 1.40 7.59 -52.49 -0.40 1.00 16 18 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 19 N -0.91 -26.87 13.65 55.43 0.76 -26.11 16 20 Si 1.07 25.17 29.90 -169.99 -5.08 20.09 16 21 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.05 0.56 6.15 -2.30 -0.01 0.55 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.44 8.11 -51.93 -0.42 0.02 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 33 H 0.06 0.79 8.02 -51.92 -0.42 0.38 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.11 4.77 -51.93 -0.25 0.86 16 36 H 0.04 0.61 7.96 -51.93 -0.41 0.20 16 37 H 0.09 1.26 8.07 -51.93 -0.42 0.85 16 38 H 0.01 0.35 8.01 -51.93 -0.42 -0.06 16 39 H 0.03 0.69 8.01 -51.93 -0.42 0.27 16 40 H 0.27 7.77 7.22 -40.82 -0.29 7.48 16 41 H 0.05 0.51 7.70 -51.93 -0.40 0.11 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 341.46 15.07 5.15 5.15 Total: -1.00 -30.78 341.46 -7.89 -38.67 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -7.29 Total: -3.68 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -0.61 Total: -11.19 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.31 Total: -44.56 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.36 Total: -4.47 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.09 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.78 -7.89 -38.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177039636.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.012 kcal (2) G-P(sol) polarization free energy of solvation -30.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds