Wall clock time and date at job start Mon Mar 30 2020 00:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.46764 * 2 1 4 4 C 1.42899 * 113.99695 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47336 * 180.02562 * 4 3 2 6 6 H 1.09005 * 110.87342 * 57.38780 * 5 4 3 7 7 C 1.55139 * 110.99155 * 293.54353 * 5 4 3 8 8 C 1.54315 * 103.02316 * 206.25297 * 7 5 4 9 9 N 1.47443 * 107.23255 * 22.28267 * 8 7 5 10 10 C 1.46898 * 111.00043 * 123.25439 * 9 8 7 11 11 C 1.53002 * 109.46653 * 69.87629 * 10 9 8 12 12 H 1.09000 * 109.47312 * 55.00148 * 11 10 9 13 13 C 1.47196 * 109.47329 * 294.99669 * 11 10 9 14 14 N 8.51559 * 116.29688 * 333.78186 * 2 1 3 15 15 C 1.53005 * 109.47140 * 174.99749 * 11 10 9 16 16 C 1.50695 * 109.47088 * 184.99922 * 15 11 10 17 17 H 1.07995 * 120.00496 * 0.02562 * 16 15 11 18 18 C 1.37880 * 119.99572 * 180.02562 * 16 15 11 19 19 N 1.31511 * 120.00327 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99951 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 59.99744 * 20 18 16 22 22 H 1.48503 * 109.47261 * 299.99924 * 20 18 16 23 23 H 1.48500 * 109.47454 * 179.97438 * 20 18 16 24 24 C 1.47845 * 108.56637 * 0.98967 * 9 8 7 25 25 H 1.09001 * 109.47200 * 60.00038 * 1 2 3 26 26 H 1.08999 * 109.47541 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47402 * 299.99827 * 1 2 3 28 28 H 1.08998 * 109.47061 * 240.00560 * 2 1 3 29 29 H 1.09001 * 109.47200 * 119.99962 * 2 1 3 30 30 H 1.09003 * 109.47755 * 59.99666 * 4 3 2 31 31 H 1.09001 * 109.47321 * 299.99779 * 4 3 2 32 32 H 1.09008 * 110.70709 * 87.86658 * 7 5 4 33 33 H 1.09007 * 110.85382 * 324.71078 * 7 5 4 34 34 H 1.08995 * 109.88541 * 262.87718 * 8 7 5 35 35 H 1.08993 * 109.88771 * 141.68618 * 8 7 5 36 36 H 1.09001 * 109.47390 * 309.87597 * 10 9 8 37 37 H 1.09003 * 109.47405 * 189.87434 * 10 9 8 38 38 H 1.09002 * 109.46935 * 64.99887 * 15 11 10 39 39 H 1.08998 * 109.47061 * 305.00681 * 15 11 10 40 40 H 0.97006 * 119.99995 * 359.97438 * 19 18 16 41 41 H 1.09001 * 110.37530 * 94.73548 * 24 9 8 42 42 H 1.08996 * 110.37860 * 217.07490 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8253 2.9384 0.0001 6 1 3.3955 3.4547 0.8585 7 6 3.4090 3.6254 -1.3271 8 6 4.4159 4.7886 -1.4474 9 7 5.5910 4.4354 -0.6298 10 6 6.8178 4.4497 -1.4376 11 6 7.1624 5.8916 -1.8160 12 1 7.2296 6.4981 -0.9129 13 6 6.1120 6.4330 -2.6937 14 7 5.3026 6.8489 -3.3728 15 6 8.5046 5.9194 -2.5500 16 6 8.9031 7.3485 -2.8141 17 1 8.2634 8.1562 -2.4906 18 6 10.0846 7.6249 -3.4690 19 7 10.8635 6.6414 -3.8635 20 14 10.5790 9.3963 -3.7959 21 1 10.7058 10.1210 -2.5058 22 1 9.5429 10.0531 -4.6328 23 1 11.8817 9.4234 -4.5083 24 6 5.3654 3.1018 -0.0327 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8333 0.9767 -0.8908 31 1 3.8339 0.9765 0.8892 32 1 2.3888 4.0038 -1.2618 33 1 3.5108 2.9390 -2.1679 34 1 3.9664 5.7082 -1.0728 35 1 4.7131 4.9156 -2.4883 36 1 6.6634 3.8633 -2.3434 37 1 7.6372 4.0195 -0.8616 38 1 8.4122 5.3871 -3.4966 39 1 9.2650 5.4378 -1.9352 40 1 10.6069 5.7214 -3.6934 41 1 5.8161 2.3271 -0.6530 42 1 5.7725 3.0646 0.9777 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177039636.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:31 Heat of formation + Delta-G solvation = -51.922646 kcal Electronic energy + Delta-G solvation = -19989.161498 eV Core-core repulsion = 16967.924945 eV Total energy + Delta-G solvation = -3021.236552 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.70490 -39.00989 -37.83231 -36.03081 -34.60870 -32.83263 -31.47420 -30.37787 -28.12457 -25.89050 -24.70843 -23.95282 -23.66774 -21.79545 -21.24813 -19.12763 -18.44525 -17.80365 -17.15395 -16.81815 -16.50718 -15.81536 -15.63792 -15.25074 -15.09918 -14.75899 -14.44745 -14.24508 -14.00590 -13.90321 -13.71917 -13.48382 -13.35193 -13.10195 -12.81968 -12.48467 -12.39696 -12.32581 -12.12941 -12.04114 -11.98084 -11.87260 -11.67924 -11.59800 -11.54481 -10.67760 -10.53633 -10.53133 -9.38803 -8.64437 -6.35273 1.53628 1.59784 1.79055 1.86147 1.89698 2.54943 2.60249 2.95779 3.12581 3.21291 3.60014 3.70503 3.82370 4.05026 4.15925 4.19493 4.26826 4.29497 4.38116 4.42975 4.49044 4.51253 4.56422 4.66736 4.71016 4.75959 4.81333 4.83890 4.92007 4.94600 5.02193 5.12680 5.19767 5.25097 5.28694 5.38395 5.89030 5.90888 6.03689 6.20146 6.28603 6.62079 6.68739 7.42021 8.77807 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.050078 B = 0.003150 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.990119 B = 8885.902114 C = 9164.822709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.411 6.411 4 C 0.076 3.924 5 C -0.088 4.088 6 H 0.089 0.911 7 C -0.123 4.123 8 C 0.031 3.969 9 N -0.533 5.533 10 C 0.068 3.932 11 C 0.024 3.976 12 H 0.119 0.881 13 C 0.256 3.744 14 N -0.503 5.503 15 C 0.023 3.977 16 C -0.616 4.616 17 H 0.044 0.956 18 C -0.030 4.030 19 N -0.935 5.935 20 Si 1.105 2.895 21 H -0.264 1.264 22 H -0.284 1.284 23 H -0.282 1.282 24 C 0.051 3.949 25 H 0.053 0.947 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.037 0.963 37 H 0.115 0.885 38 H -0.004 1.004 39 H 0.035 0.965 40 H 0.262 0.738 41 H 0.060 0.940 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.887 -15.205 11.395 24.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.331 6.331 4 C -0.001 4.001 5 C -0.107 4.107 6 H 0.108 0.892 7 C -0.162 4.162 8 C -0.097 4.097 9 N -0.257 5.257 10 C -0.061 4.061 11 C 0.002 3.998 12 H 0.137 0.863 13 C -0.060 4.060 14 N -0.181 5.181 15 C -0.015 4.015 16 C -0.654 4.654 17 H 0.062 0.938 18 C -0.229 4.229 19 N -0.572 5.572 20 Si 0.928 3.072 21 H -0.189 1.189 22 H -0.210 1.210 23 H -0.207 1.207 24 C -0.076 4.076 25 H 0.072 0.928 26 H 0.108 0.892 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.133 0.867 38 H 0.014 0.986 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.987 -13.108 10.100 22.326 hybrid contribution -0.759 -1.623 -0.187 1.802 sum -15.747 -14.732 9.912 23.733 Atomic orbital electron populations 1.21767 0.93241 1.03282 1.02507 1.22637 0.96142 0.82969 1.00868 1.87868 1.21706 1.27899 1.95595 1.22421 0.81022 0.95423 1.01235 1.22215 0.95285 0.95005 0.98154 0.89244 1.22689 0.99132 0.96567 0.97803 1.23060 0.91666 0.98947 0.96060 1.63612 1.01720 1.28430 1.31942 1.22291 0.93942 0.93277 0.96636 1.19110 0.88586 0.96729 0.95353 0.86347 1.29417 0.92203 0.91520 0.92820 1.81010 1.14294 1.11058 1.11759 1.19141 0.91148 0.96604 0.94650 1.22363 1.08370 0.93266 1.41368 0.93784 1.27066 0.93712 1.08809 0.93289 1.70912 1.39718 1.00645 1.45928 0.83061 0.76015 0.70561 0.77553 1.18904 1.21001 1.20693 1.23082 0.94344 0.88809 1.01353 0.92770 0.89182 0.92259 0.92958 0.92170 0.92919 0.91198 0.90881 0.91756 0.92046 0.94005 0.94461 0.86668 0.98603 0.94663 0.92870 0.92149 0.87828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.28 71.98 0.74 -1.07 16 2 C 0.05 0.69 6.66 71.98 0.48 1.17 16 3 O -0.41 -8.02 10.20 -148.98 -1.52 -9.54 16 4 C 0.08 1.24 5.38 71.98 0.39 1.63 16 5 C -0.09 -1.70 3.32 -9.41 -0.03 -1.73 16 6 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 7 C -0.12 -2.94 6.27 31.77 0.20 -2.74 16 8 C 0.03 0.90 5.24 86.65 0.45 1.35 16 9 N -0.53 -14.08 5.16 -885.56 -4.57 -18.65 16 10 C 0.07 1.95 4.34 86.30 0.37 2.33 16 11 C 0.02 0.90 2.42 -12.60 -0.03 0.87 16 12 H 0.12 4.28 8.14 -2.39 -0.02 4.26 16 13 C 0.26 10.72 10.66 89.45 0.95 11.67 16 14 N -0.50 -22.59 17.69 20.00 0.35 -22.23 16 15 C 0.02 1.08 3.74 29.85 0.11 1.19 16 16 C -0.62 -33.40 8.60 25.60 0.22 -33.18 16 17 H 0.04 2.40 7.59 -2.91 -0.02 2.38 16 18 C -0.03 -1.68 5.46 84.66 0.46 -1.22 16 19 N -0.93 -55.48 13.65 21.45 0.29 -55.19 16 20 Si 1.11 50.21 29.90 68.60 2.05 52.26 16 21 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 C 0.05 0.99 6.15 86.77 0.53 1.53 16 25 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.82 8.11 -2.39 -0.02 0.80 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.06 1.53 8.02 -2.38 -0.02 1.51 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.04 1.42 4.77 -2.39 -0.01 1.41 16 36 H 0.04 1.10 7.96 -2.39 -0.02 1.08 16 37 H 0.12 2.83 8.07 -2.39 -0.02 2.81 16 38 H 0.00 -0.22 8.01 -2.39 -0.02 -0.24 16 39 H 0.04 1.60 8.01 -2.39 -0.02 1.58 16 40 H 0.26 15.31 7.22 -92.70 -0.67 14.64 16 41 H 0.06 1.06 7.70 -2.39 -0.02 1.05 16 42 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -65.58 341.46 2.54 -63.05 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.07 Total: 8.50 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 4.85 Total: -18.21 kcal Atomic # 7 Polarization: -92.14 SS G_CDS: -3.92 Total: -96.06 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -1.52 Total: -9.54 kcal Atomic # 14 Polarization: 50.21 SS G_CDS: 2.05 Total: 52.26 kcal Total: -65.58 2.54 -63.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177039636.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.127 kcal (2) G-P(sol) polarization free energy of solvation -65.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds