Wall clock time and date at job start Mon Mar 30 2020 00:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47023 * 2 1 4 4 C 1.42899 * 113.99847 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46901 * 180.02562 * 4 3 2 6 6 H 1.08996 * 110.88133 * 57.38805 * 5 4 3 7 7 C 1.55146 * 110.98713 * 293.54074 * 5 4 3 8 8 C 1.54319 * 103.01862 * 206.21913 * 7 5 4 9 9 N 1.47446 * 107.23396 * 22.28548 * 8 7 5 10 10 C 1.46902 * 111.00042 * 123.25304 * 9 8 7 11 11 C 1.53006 * 109.46626 * 69.87703 * 10 9 8 12 12 H 1.08992 * 109.47046 * 304.99696 * 11 10 9 13 13 C 1.47204 * 109.47257 * 64.99983 * 11 10 9 14 14 N 9.54558 * 130.55976 * 2.68792 * 2 1 3 15 15 C 1.52999 * 109.46811 * 184.99853 * 11 10 9 16 16 C 1.50704 * 109.46935 * 175.00197 * 15 11 10 17 17 H 1.08000 * 120.00086 * 359.97438 * 16 15 11 18 18 C 1.37884 * 119.99742 * 180.02562 * 16 15 11 19 19 N 1.31510 * 119.99866 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99621 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46905 * 60.00135 * 20 18 16 22 22 H 1.48497 * 109.46651 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47277 * 300.00115 * 20 18 16 24 24 C 1.47851 * 108.56536 * 0.98840 * 9 8 7 25 25 H 1.09008 * 109.47284 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47360 * 300.00061 * 1 2 3 27 27 H 1.09000 * 109.47151 * 60.00460 * 1 2 3 28 28 H 1.08995 * 109.47069 * 239.99962 * 2 1 3 29 29 H 1.09006 * 109.46912 * 119.99924 * 2 1 3 30 30 H 1.08992 * 109.47462 * 59.99500 * 4 3 2 31 31 H 1.09009 * 109.47016 * 299.99382 * 4 3 2 32 32 H 1.08999 * 110.70076 * 87.83833 * 7 5 4 33 33 H 1.09000 * 110.85766 * 324.67192 * 7 5 4 34 34 H 1.08996 * 109.88950 * 262.88433 * 8 7 5 35 35 H 1.08995 * 109.88838 * 141.68563 * 8 7 5 36 36 H 1.08993 * 109.47737 * 309.87835 * 10 9 8 37 37 H 1.09000 * 109.47263 * 189.87397 * 10 9 8 38 38 H 1.09003 * 109.46920 * 294.99990 * 15 11 10 39 39 H 1.08995 * 109.47278 * 54.99923 * 15 11 10 40 40 H 0.97001 * 119.99765 * 179.97438 * 19 18 16 41 41 H 1.09000 * 110.37385 * 94.73419 * 24 9 8 42 42 H 1.09000 * 110.37382 * 217.07477 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8253 2.9384 0.0001 6 1 3.3956 3.4547 0.8584 7 6 3.4090 3.6252 -1.3273 8 6 4.4153 4.7890 -1.4470 9 7 5.5903 4.4364 -0.6292 10 6 6.8175 4.4515 -1.4366 11 6 7.1613 5.8937 -1.8147 12 1 6.3073 6.3520 -2.3133 13 6 7.4863 6.6558 -0.5980 14 7 7.7369 7.2441 0.3401 15 6 8.3662 5.9002 -2.7577 16 6 8.6290 7.3079 -3.2272 17 1 7.9994 8.1169 -2.8874 18 6 9.6727 7.5628 -4.0914 19 7 10.4391 6.5775 -4.5055 20 14 9.9980 9.3075 -4.6740 21 1 10.2817 10.1755 -3.5029 22 1 11.1675 9.3138 -5.5890 23 1 8.8038 9.8203 -5.3925 24 6 5.3653 3.1026 -0.0323 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8333 0.9767 -0.8907 31 1 3.8340 0.9765 0.8893 32 1 2.3887 4.0031 -1.2621 33 1 3.5114 2.9391 -2.1680 34 1 3.9653 5.7084 -1.0724 35 1 4.7127 4.9164 -2.4878 36 1 6.6636 3.8652 -2.3425 37 1 7.6369 4.0217 -0.8605 38 1 9.2425 5.5236 -2.2300 39 1 8.1583 5.2632 -3.6174 40 1 11.1731 6.7568 -5.1138 41 1 5.8165 2.3282 -0.6526 42 1 5.7722 3.0655 0.9783 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247376093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:37 Heat of formation + Delta-G solvation = -36.827667 kcal Electronic energy + Delta-G solvation = -19827.358276 eV Core-core repulsion = 16806.776291 eV Total energy + Delta-G solvation = -3020.581985 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.48064 -38.01034 -36.24643 -33.96562 -32.93726 -31.69522 -30.40553 -29.38873 -26.83281 -24.86127 -23.33737 -23.06293 -21.75676 -20.67737 -20.33218 -17.12571 -16.64674 -16.50872 -16.30246 -15.66589 -15.56969 -14.59907 -14.28579 -13.99557 -13.78767 -13.31689 -13.07435 -12.96026 -12.81264 -12.41806 -12.32062 -11.92250 -11.86303 -11.72968 -11.58104 -11.32586 -11.14474 -11.06478 -10.94341 -10.84108 -10.68676 -10.58065 -10.51844 -10.16379 -9.84189 -9.51331 -9.22307 -8.44332 -8.17622 -6.08608 -4.11602 3.32069 3.32577 3.36194 3.40302 3.78569 3.88266 4.07596 4.42136 4.55894 4.70118 4.71127 4.74151 4.90263 4.97464 5.03833 5.13336 5.17545 5.29482 5.31129 5.36318 5.40619 5.55851 5.59759 5.61674 5.65561 5.75138 5.78241 5.89318 6.01100 6.02747 6.11466 6.27284 6.41304 6.51148 6.93871 7.09584 7.21086 7.43301 7.54216 7.86715 8.24612 8.63103 8.92973 9.53707 11.02314 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.038240 B = 0.003139 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.048350 B = 8917.052776 C = 9128.835952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.387 6.387 4 C 0.074 3.926 5 C -0.096 4.096 6 H 0.090 0.910 7 C -0.128 4.128 8 C 0.036 3.964 9 N -0.531 5.531 10 C 0.058 3.942 11 C 0.012 3.988 12 H 0.099 0.901 13 C 0.257 3.743 14 N -0.481 5.481 15 C 0.032 3.968 16 C -0.526 4.526 17 H 0.056 0.944 18 C 0.062 3.938 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.052 3.948 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.026 0.974 39 H 0.036 0.964 40 H 0.263 0.737 41 H 0.049 0.951 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.797 -14.780 5.589 23.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.306 6.306 4 C -0.003 4.003 5 C -0.115 4.115 6 H 0.109 0.891 7 C -0.167 4.167 8 C -0.091 4.091 9 N -0.255 5.255 10 C -0.071 4.071 11 C -0.010 4.010 12 H 0.117 0.883 13 C -0.059 4.059 14 N -0.158 5.158 15 C -0.007 4.007 16 C -0.564 4.564 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.076 4.076 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.308 -13.396 7.279 22.325 hybrid contribution 0.331 -0.112 -1.420 1.462 sum -15.978 -13.508 5.859 21.727 Atomic orbital electron populations 1.21741 0.93799 1.02139 1.03179 1.22442 0.95579 0.84007 0.99960 1.87893 1.21174 1.26143 1.95407 1.22433 0.81175 0.96608 1.00126 1.22275 0.95596 0.93999 0.99652 0.89120 1.22754 0.99932 0.97427 0.96566 1.22931 0.90556 0.98437 0.97222 1.63626 1.02748 1.26190 1.32967 1.22417 0.91971 0.96425 0.96313 1.19225 1.02637 0.90893 0.88271 0.88303 1.28814 0.91350 0.92514 0.93260 1.80943 1.10940 1.10687 1.13212 1.19170 0.90273 0.98287 0.92980 1.21110 1.14333 0.93189 1.27772 0.92547 1.24953 0.95813 0.97109 0.96094 1.69928 1.18392 1.31294 1.33499 0.86649 0.77804 0.84915 0.78695 1.20206 1.21204 1.20049 1.22950 0.93913 0.90353 1.00417 0.91219 0.91876 0.91810 0.93498 0.93553 0.93233 0.93228 0.90611 0.91551 0.90500 0.91686 0.92696 0.90349 0.95594 0.94530 0.92757 0.93268 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.43 6.66 37.16 0.25 0.68 16 3 O -0.39 -3.96 10.20 -35.23 -0.36 -4.31 16 4 C 0.07 0.67 5.38 37.16 0.20 0.87 16 5 C -0.10 -0.99 3.32 -88.48 -0.29 -1.29 16 6 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 7 C -0.13 -1.36 6.27 -24.90 -0.16 -1.52 16 8 C 0.04 0.45 6.13 -2.83 -0.02 0.43 16 9 N -0.53 -7.37 4.86 -231.24 -1.12 -8.49 16 10 C 0.06 0.88 3.90 -3.82 -0.01 0.86 16 11 C 0.01 0.22 2.18 -93.40 -0.20 0.02 16 12 H 0.10 1.77 7.05 -51.93 -0.37 1.40 16 13 C 0.26 5.53 13.67 -20.78 -0.28 5.25 16 14 N -0.48 -11.20 18.53 42.13 0.78 -10.42 16 15 C 0.03 0.74 4.42 -27.88 -0.12 0.61 16 16 C -0.53 -14.12 8.60 -34.44 -0.30 -14.42 16 17 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 20 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.05 0.58 6.15 -2.30 -0.01 0.57 16 25 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.43 8.11 -51.93 -0.42 0.00 16 31 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.68 8.02 -51.93 -0.42 0.26 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.80 6.94 -51.93 -0.36 0.44 16 36 H 0.05 0.77 7.96 -51.93 -0.41 0.35 16 37 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.05 0.51 7.71 -51.93 -0.40 0.11 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 347.62 15.07 5.24 5.24 Total: -1.00 -30.65 347.62 -7.82 -38.47 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -7.40 Total: -5.10 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -0.67 Total: -6.90 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.39 Total: -43.82 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -0.36 Total: -4.31 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.65 -7.82 -38.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247376093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.640 kcal (2) G-P(sol) polarization free energy of solvation -30.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds