Wall clock time and date at job start Mon Mar 30 2020 00:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47023 * 2 1 4 4 C 1.42899 * 113.99847 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46901 * 180.02562 * 4 3 2 6 6 H 1.08996 * 110.88133 * 57.38805 * 5 4 3 7 7 C 1.55146 * 110.98713 * 293.54074 * 5 4 3 8 8 C 1.54319 * 103.01862 * 206.21913 * 7 5 4 9 9 N 1.47446 * 107.23396 * 22.28548 * 8 7 5 10 10 C 1.46902 * 111.00042 * 123.25304 * 9 8 7 11 11 C 1.53006 * 109.46626 * 69.87703 * 10 9 8 12 12 H 1.08992 * 109.47046 * 304.99696 * 11 10 9 13 13 C 1.47204 * 109.47257 * 64.99983 * 11 10 9 14 14 N 9.54558 * 130.55976 * 2.68792 * 2 1 3 15 15 C 1.52999 * 109.46811 * 184.99853 * 11 10 9 16 16 C 1.50704 * 109.46935 * 175.00197 * 15 11 10 17 17 H 1.08000 * 120.00086 * 359.97438 * 16 15 11 18 18 C 1.37884 * 119.99742 * 180.02562 * 16 15 11 19 19 N 1.31510 * 119.99866 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99621 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46905 * 60.00135 * 20 18 16 22 22 H 1.48497 * 109.46651 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47277 * 300.00115 * 20 18 16 24 24 C 1.47851 * 108.56536 * 0.98840 * 9 8 7 25 25 H 1.09008 * 109.47284 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47360 * 300.00061 * 1 2 3 27 27 H 1.09000 * 109.47151 * 60.00460 * 1 2 3 28 28 H 1.08995 * 109.47069 * 239.99962 * 2 1 3 29 29 H 1.09006 * 109.46912 * 119.99924 * 2 1 3 30 30 H 1.08992 * 109.47462 * 59.99500 * 4 3 2 31 31 H 1.09009 * 109.47016 * 299.99382 * 4 3 2 32 32 H 1.08999 * 110.70076 * 87.83833 * 7 5 4 33 33 H 1.09000 * 110.85766 * 324.67192 * 7 5 4 34 34 H 1.08996 * 109.88950 * 262.88433 * 8 7 5 35 35 H 1.08995 * 109.88838 * 141.68563 * 8 7 5 36 36 H 1.08993 * 109.47737 * 309.87835 * 10 9 8 37 37 H 1.09000 * 109.47263 * 189.87397 * 10 9 8 38 38 H 1.09003 * 109.46920 * 294.99990 * 15 11 10 39 39 H 1.08995 * 109.47278 * 54.99923 * 15 11 10 40 40 H 0.97001 * 119.99765 * 179.97438 * 19 18 16 41 41 H 1.09000 * 110.37385 * 94.73419 * 24 9 8 42 42 H 1.09000 * 110.37382 * 217.07477 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8253 2.9384 0.0001 6 1 3.3956 3.4547 0.8584 7 6 3.4090 3.6252 -1.3273 8 6 4.4153 4.7890 -1.4470 9 7 5.5903 4.4364 -0.6292 10 6 6.8175 4.4515 -1.4366 11 6 7.1613 5.8937 -1.8147 12 1 6.3073 6.3520 -2.3133 13 6 7.4863 6.6558 -0.5980 14 7 7.7369 7.2441 0.3401 15 6 8.3662 5.9002 -2.7577 16 6 8.6290 7.3079 -3.2272 17 1 7.9994 8.1169 -2.8874 18 6 9.6727 7.5628 -4.0914 19 7 10.4391 6.5775 -4.5055 20 14 9.9980 9.3075 -4.6740 21 1 10.2817 10.1755 -3.5029 22 1 11.1675 9.3138 -5.5890 23 1 8.8038 9.8203 -5.3925 24 6 5.3653 3.1026 -0.0323 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8333 0.9767 -0.8907 31 1 3.8340 0.9765 0.8893 32 1 2.3887 4.0031 -1.2621 33 1 3.5114 2.9391 -2.1680 34 1 3.9653 5.7084 -1.0724 35 1 4.7127 4.9164 -2.4878 36 1 6.6636 3.8652 -2.3425 37 1 7.6369 4.0217 -0.8605 38 1 9.2425 5.5236 -2.2300 39 1 8.1583 5.2632 -3.6174 40 1 11.1731 6.7568 -5.1138 41 1 5.8165 2.3282 -0.6526 42 1 5.7722 3.0655 0.9783 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247376093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:36 Heat of formation + Delta-G solvation = -55.352204 kcal Electronic energy + Delta-G solvation = -19828.161560 eV Core-core repulsion = 16806.776291 eV Total energy + Delta-G solvation = -3021.385269 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.44503 -38.85198 -37.77091 -35.67245 -34.47874 -32.79334 -31.47259 -30.27431 -28.44448 -25.95826 -24.59906 -23.65203 -23.54810 -21.69607 -21.21591 -18.51296 -18.17781 -17.72440 -17.07454 -16.83631 -16.52336 -16.35721 -15.45005 -15.06959 -14.72034 -14.55839 -14.35991 -14.15172 -13.99582 -13.69887 -13.47477 -13.36399 -13.10150 -12.96686 -12.88524 -12.54488 -12.46221 -12.39015 -12.23198 -12.07430 -11.93872 -11.81659 -11.58468 -11.47557 -11.35313 -11.11627 -10.54823 -10.49203 -9.21571 -8.19419 -6.27587 1.40983 1.42875 1.49902 2.06847 2.14489 2.41568 2.65013 3.06891 3.16068 3.35605 3.73003 3.82748 3.96743 4.17095 4.21190 4.31299 4.36307 4.39396 4.47861 4.50213 4.54405 4.62464 4.69304 4.74272 4.79400 4.89646 4.90123 4.97526 5.04604 5.07410 5.10742 5.23219 5.29590 5.41325 5.46256 5.61712 5.78974 6.07531 6.09888 6.23102 6.32871 6.82860 6.93245 7.40782 8.91311 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.038240 B = 0.003139 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.048350 B = 8917.052776 C = 9128.835952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.408 6.408 4 C 0.076 3.924 5 C -0.090 4.090 6 H 0.080 0.920 7 C -0.121 4.121 8 C 0.034 3.966 9 N -0.548 5.548 10 C 0.068 3.932 11 C 0.022 3.978 12 H 0.113 0.887 13 C 0.267 3.733 14 N -0.515 5.515 15 C 0.039 3.961 16 C -0.540 4.540 17 H 0.052 0.948 18 C 0.012 3.988 19 N -0.923 5.923 20 Si 0.948 3.052 21 H -0.282 1.282 22 H -0.281 1.281 23 H -0.263 1.263 24 C 0.052 3.948 25 H 0.088 0.912 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.002 0.998 39 H 0.036 0.964 40 H 0.264 0.736 41 H 0.063 0.937 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.889 -15.614 5.288 24.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.328 6.328 4 C -0.001 4.001 5 C -0.109 4.109 6 H 0.098 0.902 7 C -0.159 4.159 8 C -0.093 4.093 9 N -0.273 5.273 10 C -0.061 4.061 11 C 0.001 3.999 12 H 0.131 0.869 13 C -0.049 4.049 14 N -0.193 5.193 15 C 0.000 4.000 16 C -0.578 4.578 17 H 0.071 0.929 18 C -0.187 4.187 19 N -0.563 5.563 20 Si 0.774 3.226 21 H -0.207 1.207 22 H -0.206 1.206 23 H -0.187 1.187 24 C -0.075 4.075 25 H 0.107 0.893 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.020 0.980 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.419 -14.236 6.981 23.555 hybrid contribution 0.645 0.128 -1.299 1.457 sum -16.774 -14.107 5.682 22.642 Atomic orbital electron populations 1.21764 0.93169 1.03235 1.02576 1.22631 0.96175 0.83039 1.00785 1.87862 1.21606 1.27781 1.95578 1.22404 0.81016 0.95613 1.01034 1.22184 0.94747 0.94948 0.99053 0.90152 1.22687 0.99410 0.96830 0.96969 1.22948 0.90501 0.98916 0.96981 1.63545 1.02591 1.28078 1.33066 1.22236 0.92813 0.93659 0.97360 1.19185 1.01054 0.93274 0.86434 0.86936 1.29324 0.90436 0.91816 0.93323 1.80939 1.11906 1.11933 1.14507 1.18988 0.91163 0.96375 0.93473 1.21518 1.14113 0.94732 1.27471 0.92938 1.25707 0.95892 1.00589 0.96520 1.70019 1.18966 1.33012 1.34263 0.85757 0.78180 0.80610 0.78093 1.20750 1.20626 1.18739 1.22969 0.94737 0.89379 1.00404 0.89304 0.92446 0.92416 0.92690 0.92656 0.92389 0.92222 0.90477 0.90821 0.91224 0.91526 0.90965 0.90506 0.97979 0.94605 0.92671 0.91912 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.28 71.98 0.74 -0.96 16 2 C 0.05 0.67 6.66 71.98 0.48 1.14 16 3 O -0.41 -7.65 10.20 -148.98 -1.52 -9.17 16 4 C 0.08 1.23 5.38 71.98 0.39 1.62 16 5 C -0.09 -1.71 3.32 -9.41 -0.03 -1.74 16 6 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 7 C -0.12 -2.34 6.27 31.78 0.20 -2.14 16 8 C 0.03 0.79 6.13 86.65 0.53 1.32 16 9 N -0.55 -14.36 4.86 -885.52 -4.30 -18.67 16 10 C 0.07 1.98 3.90 86.31 0.34 2.31 16 11 C 0.02 0.82 2.18 -12.60 -0.03 0.80 16 12 H 0.11 3.87 7.05 -2.39 -0.02 3.86 16 13 C 0.27 11.37 13.67 89.45 1.22 12.60 16 14 N -0.52 -23.95 18.53 20.00 0.37 -23.58 16 15 C 0.04 1.80 4.42 29.85 0.13 1.93 16 16 C -0.54 -28.89 8.60 25.60 0.22 -28.67 16 17 H 0.05 2.79 7.59 -2.91 -0.02 2.77 16 18 C 0.01 0.66 5.46 84.66 0.46 1.12 16 19 N -0.92 -53.08 13.29 21.45 0.28 -52.79 16 20 Si 0.95 43.66 29.54 68.60 2.03 45.69 16 21 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 23 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 24 C 0.05 1.09 6.15 86.77 0.53 1.62 16 25 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.06 0.84 8.11 -2.39 -0.02 0.82 16 31 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.33 8.02 -2.39 -0.02 1.32 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.52 6.94 -2.39 -0.02 1.50 16 36 H 0.07 1.85 7.96 -2.39 -0.02 1.83 16 37 H 0.08 2.25 8.07 -2.39 -0.02 2.23 16 38 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.26 14.46 8.31 -92.71 -0.77 13.68 16 41 H 0.06 1.15 7.71 -2.39 -0.02 1.13 16 42 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -64.29 347.62 3.01 -61.28 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 0.97 Total: 6.29 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 5.19 Total: -9.04 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -3.65 Total: -95.04 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -1.52 Total: -9.17 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -64.29 3.01 -61.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247376093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.925 kcal (2) G-P(sol) polarization free energy of solvation -64.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds