Wall clock time and date at job start Mon Mar 30 2020 00:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42896 * 109.47265 * 2 1 4 4 C 1.42906 * 114.00232 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47166 * 180.02562 * 4 3 2 6 6 H 1.09009 * 110.27600 * 307.08614 * 5 4 3 7 7 C 1.54591 * 110.31237 * 69.28014 * 5 4 3 8 8 C 1.54940 * 102.92133 * 140.87300 * 7 5 4 9 9 N 1.48538 * 103.22630 * 322.58766 * 8 7 5 10 10 C 1.46897 * 110.99513 * 159.72013 * 9 8 7 11 11 C 1.53002 * 109.47564 * 52.60544 * 10 9 8 12 12 H 1.08997 * 109.46975 * 305.00071 * 11 10 9 13 13 C 1.47205 * 109.46663 * 64.99791 * 11 10 9 14 14 N 8.61734 * 139.25491 * 45.44018 * 2 1 3 15 15 C 1.52999 * 109.47429 * 184.99350 * 11 10 9 16 16 C 1.50696 * 109.47110 * 174.99770 * 15 11 10 17 17 H 1.07997 * 120.00012 * 0.02562 * 16 15 11 18 18 C 1.37877 * 119.99842 * 180.02562 * 16 15 11 19 19 N 1.31516 * 120.00069 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99806 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46845 * 90.00621 * 20 18 16 22 22 H 1.48503 * 109.47399 * 210.00111 * 20 18 16 23 23 H 1.48498 * 109.47295 * 330.00717 * 20 18 16 24 24 C 1.47902 * 105.81965 * 39.20771 * 9 8 7 25 25 H 1.08997 * 109.47414 * 60.00005 * 1 2 3 26 26 H 1.09001 * 109.47116 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47220 * 299.99755 * 1 2 3 28 28 H 1.09005 * 109.47220 * 240.00245 * 2 1 3 29 29 H 1.08997 * 109.47414 * 119.99995 * 2 1 3 30 30 H 1.09001 * 109.46966 * 59.99851 * 4 3 2 31 31 H 1.09000 * 109.46850 * 300.00021 * 4 3 2 32 32 H 1.08994 * 110.73149 * 259.23264 * 7 5 4 33 33 H 1.09001 * 110.72133 * 22.34193 * 7 5 4 34 34 H 1.09004 * 110.66759 * 204.15529 * 8 7 5 35 35 H 1.08994 * 110.66865 * 81.02478 * 8 7 5 36 36 H 1.09001 * 109.47366 * 292.60479 * 10 9 8 37 37 H 1.09003 * 109.47223 * 172.60399 * 10 9 8 38 38 H 1.09008 * 109.46748 * 55.00091 * 15 11 10 39 39 H 1.08991 * 109.47440 * 295.00296 * 15 11 10 40 40 H 0.97000 * 119.99838 * 359.97438 * 19 18 16 41 41 H 1.09006 * 109.91410 * 94.01789 * 24 9 8 42 42 H 1.08990 * 109.91509 * 215.11989 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 0.0001 6 1 3.3266 3.4628 -0.8151 7 6 3.4688 3.5882 1.3567 8 6 4.6723 4.5285 1.6174 9 7 5.8290 3.7499 1.1054 10 6 6.9709 4.6292 0.8210 11 6 7.2759 5.4838 2.0528 12 1 6.3770 6.0222 2.3531 13 6 7.7187 4.6148 3.1554 14 7 8.0586 3.9464 4.0076 15 6 8.3825 6.4857 1.7173 16 6 8.5977 7.4077 2.8897 17 1 8.0048 7.2906 3.7847 18 6 9.5515 8.4009 2.8196 19 7 10.2731 8.5439 1.7294 20 14 9.8187 9.5434 4.2731 21 1 10.8460 8.9642 5.1756 22 1 10.2797 10.8675 3.7838 23 1 8.5430 9.7066 5.0156 24 6 5.3532 3.0838 -0.1264 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8333 0.9767 -0.8908 31 1 3.8340 0.9764 0.8892 32 1 2.5433 4.1587 1.2797 33 1 3.3903 2.8321 2.1378 34 1 4.7828 4.7253 2.6838 35 1 4.5599 5.4601 1.0628 36 1 6.7289 5.2782 -0.0206 37 1 7.8430 4.0237 0.5739 38 1 8.0911 7.0699 0.8443 39 1 9.3063 5.9485 1.5032 40 1 10.1345 7.9504 0.9748 41 1 5.5974 3.6936 -0.9963 42 1 5.8162 2.1015 -0.2199 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247376103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:40 Heat of formation + Delta-G solvation = -39.173280 kcal Electronic energy + Delta-G solvation = -19930.688565 eV Core-core repulsion = 16910.004866 eV Total energy + Delta-G solvation = -3020.683698 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.56195 -38.03586 -36.37731 -34.17313 -33.15566 -31.67043 -30.36220 -29.44674 -26.50682 -24.65513 -23.38373 -23.03038 -22.12189 -20.91013 -20.19620 -17.26097 -17.01751 -16.55925 -16.30015 -15.70117 -15.58568 -14.56737 -14.17597 -13.82967 -13.77346 -13.60251 -13.32109 -12.96051 -12.70139 -12.50576 -12.32453 -12.05850 -11.84872 -11.74915 -11.54902 -11.43690 -11.31591 -11.16813 -10.96736 -10.86483 -10.66322 -10.63240 -10.31721 -10.14204 -9.90026 -9.81099 -8.68002 -8.41689 -8.33696 -6.44046 -4.15143 3.36547 3.43421 3.45322 3.61056 3.65833 3.74136 4.04303 4.49600 4.52175 4.57357 4.72382 4.74108 4.81415 4.93542 5.05543 5.15419 5.24009 5.28969 5.34461 5.35988 5.41065 5.44056 5.52200 5.57519 5.61571 5.73494 5.79231 5.82746 5.89773 6.00841 6.02381 6.16273 6.28656 6.31268 6.90912 6.97491 7.08212 7.08491 7.23374 8.02644 8.34684 8.51021 8.78677 9.56042 10.96826 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.042546 B = 0.003158 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.959487 B = 8863.035566 C = 8930.669996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.389 6.389 4 C 0.073 3.927 5 C -0.096 4.096 6 H 0.083 0.917 7 C -0.110 4.110 8 C 0.029 3.971 9 N -0.519 5.519 10 C 0.053 3.947 11 C 0.014 3.986 12 H 0.102 0.898 13 C 0.253 3.747 14 N -0.473 5.473 15 C 0.018 3.982 16 C -0.605 4.605 17 H 0.051 0.949 18 C 0.020 3.980 19 N -0.909 5.909 20 Si 1.069 2.931 21 H -0.288 1.288 22 H -0.283 1.283 23 H -0.287 1.287 24 C 0.043 3.957 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.028 0.972 39 H 0.017 0.983 40 H 0.269 0.731 41 H 0.051 0.949 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.264 -13.303 -7.358 23.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.308 6.308 4 C -0.003 4.003 5 C -0.115 4.115 6 H 0.101 0.899 7 C -0.149 4.149 8 C -0.099 4.099 9 N -0.243 5.243 10 C -0.076 4.076 11 C -0.008 4.008 12 H 0.120 0.880 13 C -0.064 4.064 14 N -0.150 5.150 15 C -0.021 4.021 16 C -0.644 4.644 17 H 0.069 0.931 18 C -0.184 4.184 19 N -0.545 5.545 20 Si 0.897 3.103 21 H -0.214 1.214 22 H -0.209 1.209 23 H -0.213 1.213 24 C -0.085 4.085 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.046 0.954 39 H 0.035 0.965 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.786 -13.247 -5.161 21.244 hybrid contribution -1.004 -0.712 -1.478 1.924 sum -16.790 -13.959 -6.639 22.822 Atomic orbital electron populations 1.21738 0.93826 1.02130 1.03138 1.22433 0.95532 0.84023 0.99978 1.87877 1.21366 1.26166 1.95431 1.22589 0.80931 0.96570 1.00256 1.21974 0.95414 0.94784 0.99345 0.89876 1.22480 0.97528 0.98680 0.96165 1.23326 0.89641 0.95532 1.01376 1.64864 1.05644 1.28046 1.25775 1.22451 0.94174 0.94489 0.96516 1.19124 1.01819 0.92532 0.87298 0.88026 1.28731 0.92015 0.92025 0.93602 1.80944 1.10413 1.12200 1.11428 1.19290 0.91904 0.92652 0.98228 1.21983 1.23770 1.17491 1.01113 0.93074 1.25798 0.92847 0.97908 1.01872 1.70777 1.39600 1.39400 1.04708 0.83539 0.76044 0.76174 0.74560 1.21429 1.20870 1.21348 1.22821 0.93225 1.00276 0.92190 0.91908 0.91231 0.91818 0.93597 0.93468 0.93452 0.92786 0.90880 0.90840 0.89789 0.92963 0.92739 0.90097 0.95423 0.96461 0.92027 0.93030 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 37.15 0.38 -0.63 16 2 C 0.06 0.46 6.66 37.15 0.25 0.71 16 3 O -0.39 -4.10 10.23 -35.23 -0.36 -4.47 16 4 C 0.07 0.71 5.02 37.15 0.19 0.90 16 5 C -0.10 -0.99 3.26 -89.27 -0.29 -1.28 16 6 H 0.08 0.83 8.14 -51.92 -0.42 0.40 16 7 C -0.11 -1.23 6.51 -24.87 -0.16 -1.39 16 8 C 0.03 0.37 5.09 -1.89 -0.01 0.36 16 9 N -0.52 -7.18 5.10 -230.45 -1.17 -8.35 16 10 C 0.05 0.80 4.39 -3.82 -0.02 0.78 16 11 C 0.01 0.27 1.90 -93.40 -0.18 0.09 16 12 H 0.10 1.82 6.52 -51.93 -0.34 1.49 16 13 C 0.25 5.42 13.67 -20.79 -0.28 5.14 16 14 N -0.47 -10.95 18.53 42.12 0.78 -10.17 16 15 C 0.02 0.41 3.73 -27.89 -0.10 0.31 16 16 C -0.61 -16.40 8.60 -34.44 -0.30 -16.70 16 17 H 0.05 1.40 7.59 -52.49 -0.40 1.00 16 18 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 19 N -0.91 -26.83 13.65 55.43 0.76 -26.08 16 20 Si 1.07 25.16 29.90 -169.99 -5.08 20.08 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 24 C 0.04 0.48 6.35 -2.75 -0.02 0.46 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.55 7.99 -51.93 -0.42 0.13 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.86 7.76 -51.93 -0.40 0.46 16 34 H 0.08 1.16 7.56 -51.93 -0.39 0.77 16 35 H 0.05 0.64 8.01 -51.93 -0.42 0.22 16 36 H 0.05 0.76 7.81 -51.93 -0.41 0.35 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.03 0.64 8.01 -51.92 -0.42 0.22 16 39 H 0.02 0.42 8.01 -51.93 -0.42 0.01 16 40 H 0.27 7.78 7.22 -40.82 -0.29 7.49 16 41 H 0.05 0.54 7.57 -51.93 -0.39 0.15 16 42 H 0.08 0.83 7.69 -51.93 -0.40 0.43 16 LS Contribution 344.67 15.07 5.19 5.19 Total: -1.00 -31.20 344.67 -7.81 -39.02 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -7.29 Total: -4.45 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -0.64 Total: -10.78 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.36 Total: -44.59 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: -0.36 Total: -4.47 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.08 Total: 20.08 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.20 -7.81 -39.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247376103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.158 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds