Wall clock time and date at job start Mon Mar 30 2020 00:50:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 O 1.42896 * 109.47265 * 2 1
4 4 C 1.42906 * 114.00232 * 180.02562 * 3 2 1
5 5 C 1.52993 * 109.47166 * 180.02562 * 4 3 2
6 6 H 1.09009 * 110.27600 * 307.08614 * 5 4 3
7 7 C 1.54591 * 110.31237 * 69.28014 * 5 4 3
8 8 C 1.54940 * 102.92133 * 140.87300 * 7 5 4
9 9 N 1.48538 * 103.22630 * 322.58766 * 8 7 5
10 10 C 1.46897 * 110.99513 * 159.72013 * 9 8 7
11 11 C 1.53002 * 109.47564 * 52.60544 * 10 9 8
12 12 H 1.08997 * 109.46975 * 305.00071 * 11 10 9
13 13 C 1.47205 * 109.46663 * 64.99791 * 11 10 9
14 14 N 8.61734 * 139.25491 * 45.44018 * 2 1 3
15 15 C 1.52999 * 109.47429 * 184.99350 * 11 10 9
16 16 C 1.50696 * 109.47110 * 174.99770 * 15 11 10
17 17 H 1.07997 * 120.00012 * 0.02562 * 16 15 11
18 18 C 1.37877 * 119.99842 * 180.02562 * 16 15 11
19 19 N 1.31516 * 120.00069 * 0.02562 * 18 16 15
20 20 Si 1.86800 * 119.99806 * 180.02562 * 18 16 15
21 21 H 1.48503 * 109.46845 * 90.00621 * 20 18 16
22 22 H 1.48503 * 109.47399 * 210.00111 * 20 18 16
23 23 H 1.48498 * 109.47295 * 330.00717 * 20 18 16
24 24 C 1.47902 * 105.81965 * 39.20771 * 9 8 7
25 25 H 1.08997 * 109.47414 * 60.00005 * 1 2 3
26 26 H 1.09001 * 109.47116 * 180.02562 * 1 2 3
27 27 H 1.09005 * 109.47220 * 299.99755 * 1 2 3
28 28 H 1.09005 * 109.47220 * 240.00245 * 2 1 3
29 29 H 1.08997 * 109.47414 * 119.99995 * 2 1 3
30 30 H 1.09001 * 109.46966 * 59.99851 * 4 3 2
31 31 H 1.09000 * 109.46850 * 300.00021 * 4 3 2
32 32 H 1.08994 * 110.73149 * 259.23264 * 7 5 4
33 33 H 1.09001 * 110.72133 * 22.34193 * 7 5 4
34 34 H 1.09004 * 110.66759 * 204.15529 * 8 7 5
35 35 H 1.08994 * 110.66865 * 81.02478 * 8 7 5
36 36 H 1.09001 * 109.47366 * 292.60479 * 10 9 8
37 37 H 1.09003 * 109.47223 * 172.60399 * 10 9 8
38 38 H 1.09008 * 109.46748 * 55.00091 * 15 11 10
39 39 H 1.08991 * 109.47440 * 295.00296 * 15 11 10
40 40 H 0.97000 * 119.99838 * 359.97438 * 19 18 16
41 41 H 1.09006 * 109.91410 * 94.01789 * 24 9 8
42 42 H 1.08990 * 109.91509 * 215.11989 * 24 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0063 1.3472 0.0000
4 6 3.4309 1.4601 -0.0006
5 6 3.8254 2.9383 0.0001
6 1 3.3266 3.4628 -0.8151
7 6 3.4688 3.5882 1.3567
8 6 4.6723 4.5285 1.6174
9 7 5.8290 3.7499 1.1054
10 6 6.9709 4.6292 0.8210
11 6 7.2759 5.4838 2.0528
12 1 6.3770 6.0222 2.3531
13 6 7.7187 4.6148 3.1554
14 7 8.0586 3.9464 4.0076
15 6 8.3825 6.4857 1.7173
16 6 8.5977 7.4077 2.8897
17 1 8.0048 7.2906 3.7847
18 6 9.5515 8.4009 2.8196
19 7 10.2731 8.5439 1.7294
20 14 9.8187 9.5434 4.2731
21 1 10.8460 8.9642 5.1756
22 1 10.2797 10.8675 3.7838
23 1 8.5430 9.7066 5.0156
24 6 5.3532 3.0838 -0.1264
25 1 -0.3634 0.5138 -0.8899
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3634 0.5138 0.8900
28 1 1.8933 -0.5138 -0.8900
29 1 1.8933 -0.5138 0.8899
30 1 3.8333 0.9767 -0.8908
31 1 3.8340 0.9764 0.8892
32 1 2.5433 4.1587 1.2797
33 1 3.3903 2.8321 2.1378
34 1 4.7828 4.7253 2.6838
35 1 4.5599 5.4601 1.0628
36 1 6.7289 5.2782 -0.0206
37 1 7.8430 4.0237 0.5739
38 1 8.0911 7.0699 0.8443
39 1 9.3063 5.9485 1.5032
40 1 10.1345 7.9504 0.9748
41 1 5.5974 3.6936 -0.9963
42 1 5.8162 2.1015 -0.2199
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000247376103.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:50:39
Heat of formation + Delta-G solvation = -58.436431 kcal
Electronic energy + Delta-G solvation = -19931.523877 eV
Core-core repulsion = 16910.004866 eV
Total energy + Delta-G solvation = -3021.519011 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-40.55424 -38.93570 -37.86363 -35.95270 -34.65368 -32.73531 -31.48174 -30.33881
-28.08434 -25.80496 -24.68066 -23.96040 -23.63590 -22.00621 -21.05299 -19.10071
-18.16968 -17.86190 -17.06613 -16.71085 -16.57888 -15.81054 -15.61112 -15.36532
-14.95560 -14.74272 -14.60950 -14.09526 -14.05055 -13.66751 -13.49288 -13.37943
-13.19740 -13.09146 -12.81333 -12.51519 -12.44600 -12.32213 -12.15907 -12.06260
-11.95495 -11.91406 -11.75345 -11.52447 -11.46248 -10.68857 -10.54154 -10.51835
-9.37710 -8.64985 -6.36018 1.53357 1.59775 1.77890 1.94199 2.01107
2.55186 2.67774 2.97316 3.16841 3.24386 3.64387 3.69814 3.91605
4.08704 4.16956 4.21741 4.34530 4.37021 4.41756 4.46380 4.50793
4.55835 4.58202 4.66062 4.68453 4.83995 4.87543 4.89194 4.96847
5.03164 5.07784 5.15680 5.17681 5.27151 5.28776 5.36253 5.89833
5.92982 6.04480 6.19777 6.29038 6.61406 6.77959 7.41536 8.77262
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.042546 B = 0.003158 C = 0.003135
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 657.959487 B = 8863.035566 C = 8930.669996
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.049 3.951
3 O -0.407 6.407
4 C 0.075 3.925
5 C -0.090 4.090
6 H 0.091 0.909
7 C -0.105 4.105
8 C 0.026 3.974
9 N -0.535 5.535
10 C 0.063 3.937
11 C 0.024 3.976
12 H 0.114 0.886
13 C 0.262 3.738
14 N -0.506 5.506
15 C 0.022 3.978
16 C -0.615 4.615
17 H 0.044 0.956
18 C -0.030 4.030
19 N -0.935 5.935
20 Si 1.107 2.893
21 H -0.284 1.284
22 H -0.278 1.278
23 H -0.269 1.269
24 C 0.044 3.956
25 H 0.060 0.940
26 H 0.088 0.912
27 H 0.056 0.944
28 H 0.057 0.943
29 H 0.049 0.951
30 H 0.061 0.939
31 H 0.047 0.953
32 H 0.082 0.918
33 H 0.063 0.937
34 H 0.069 0.931
35 H 0.060 0.940
36 H 0.073 0.927
37 H 0.078 0.922
38 H 0.032 0.968
39 H -0.002 1.002
40 H 0.262 0.738
41 H 0.064 0.936
42 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.580 -13.675 -7.949 24.401
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.027 4.027
3 O -0.327 6.327
4 C -0.002 4.002
5 C -0.109 4.109
6 H 0.109 0.891
7 C -0.143 4.143
8 C -0.101 4.101
9 N -0.259 5.259
10 C -0.066 4.066
11 C 0.002 3.998
12 H 0.132 0.868
13 C -0.054 4.054
14 N -0.184 5.184
15 C -0.017 4.017
16 C -0.653 4.653
17 H 0.063 0.937
18 C -0.229 4.229
19 N -0.572 5.572
20 Si 0.930 3.070
21 H -0.210 1.210
22 H -0.204 1.204
23 H -0.194 1.194
24 C -0.084 4.084
25 H 0.079 0.921
26 H 0.107 0.893
27 H 0.075 0.925
28 H 0.075 0.925
29 H 0.068 0.932
30 H 0.079 0.921
31 H 0.065 0.935
32 H 0.100 0.900
33 H 0.082 0.918
34 H 0.087 0.913
35 H 0.078 0.922
36 H 0.091 0.909
37 H 0.097 0.903
38 H 0.050 0.950
39 H 0.017 0.983
40 H 0.072 0.928
41 H 0.082 0.918
42 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -17.123 -13.640 -5.761 22.637
hybrid contribution -0.631 -0.650 -1.301 1.586
sum -17.754 -14.290 -7.062 23.860
Atomic orbital electron populations
1.21755 0.92959 1.03257 1.02661 1.22625 0.96313 0.83115 1.00622
1.87849 1.21636 1.27693 1.95552 1.22560 0.80850 0.96168 1.00584
1.21926 0.94808 0.95263 0.98912 0.89096 1.22421 0.97202 0.98220
0.96462 1.23340 0.89982 0.96230 1.00557 1.64830 1.05705 1.27915
1.27485 1.22290 0.94985 0.94493 0.94827 1.19103 1.00462 0.92021
0.88173 0.86788 1.29238 0.91187 0.91575 0.93416 1.80938 1.11353
1.13505 1.12571 1.19157 0.92584 0.92895 0.97071 1.22372 1.23129
1.17831 1.01957 0.93719 1.27067 0.92832 0.99614 1.03369 1.70883
1.40914 1.40112 1.05324 0.83037 0.76862 0.74818 0.72262 1.21017
1.20360 1.19426 1.22867 0.93738 1.00422 0.91331 0.92114 0.89343
0.92521 0.92504 0.93247 0.92070 0.93498 0.89965 0.91794 0.91285
0.92163 0.90909 0.90321 0.94980 0.98337 0.92849 0.91816 0.89832
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.77 10.28 71.98 0.74 -1.03 16
2 C 0.05 0.72 6.66 71.98 0.48 1.20 16
3 O -0.41 -7.94 10.23 -148.98 -1.52 -9.46 16
4 C 0.07 1.32 5.02 71.98 0.36 1.68 16
5 C -0.09 -1.66 3.26 -9.92 -0.03 -1.69 16
6 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16
7 C -0.10 -2.17 6.51 31.80 0.21 -1.96 16
8 C 0.03 0.63 5.09 86.65 0.44 1.07 16
9 N -0.53 -13.88 5.10 -883.00 -4.50 -18.38 16
10 C 0.06 1.82 4.39 86.30 0.38 2.19 16
11 C 0.02 0.89 1.90 -12.60 -0.02 0.86 16
12 H 0.11 3.95 6.52 -2.39 -0.02 3.93 16
13 C 0.26 11.13 13.67 89.45 1.22 12.35 16
14 N -0.51 -23.39 18.53 20.00 0.37 -23.02 16
15 C 0.02 1.00 3.73 29.85 0.11 1.11 16
16 C -0.61 -33.15 8.60 25.60 0.22 -32.93 16
17 H 0.04 2.42 7.59 -2.91 -0.02 2.40 16
18 C -0.03 -1.68 5.46 84.65 0.46 -1.21 16
19 N -0.94 -55.38 13.65 21.45 0.29 -55.08 16
20 Si 1.11 50.07 29.90 68.60 2.05 52.12 16
21 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16
22 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16
23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16
24 C 0.04 0.88 6.35 86.45 0.55 1.43 16
25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16
26 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16
27 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16
28 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16
29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16
30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16
31 H 0.05 0.88 7.99 -2.39 -0.02 0.87 16
32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16
33 H 0.06 1.44 7.76 -2.39 -0.02 1.42 16
34 H 0.07 1.85 7.56 -2.38 -0.02 1.83 16
35 H 0.06 1.35 8.01 -2.39 -0.02 1.33 16
36 H 0.07 1.84 7.81 -2.39 -0.02 1.82 16
37 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16
38 H 0.03 1.46 8.01 -2.38 -0.02 1.44 16
39 H 0.00 -0.09 8.01 -2.39 -0.02 -0.10 16
40 H 0.26 15.31 7.22 -92.71 -0.67 14.64 16
41 H 0.06 1.14 7.57 -2.38 -0.02 1.12 16
42 H 0.08 1.58 7.69 -2.39 -0.02 1.57 16
Total: -1.00 -65.72 344.67 2.88 -62.85
By element:
Atomic # 1 Polarization: 6.84 SS G_CDS: 1.07 Total: 7.91 kcal
Atomic # 6 Polarization: -22.04 SS G_CDS: 5.12 Total: -16.92 kcal
Atomic # 7 Polarization: -92.65 SS G_CDS: -3.84 Total: -96.49 kcal
Atomic # 8 Polarization: -7.94 SS G_CDS: -1.52 Total: -9.46 kcal
Atomic # 14 Polarization: 50.07 SS G_CDS: 2.05 Total: 52.12 kcal
Total: -65.72 2.88 -62.85 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000247376103.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.411 kcal
(2) G-P(sol) polarization free energy of solvation -65.724 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.313 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.848 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.436 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds