Wall clock time and date at job start Mon Mar 30 2020 00:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42896 * 109.47265 * 2 1 4 4 C 1.42906 * 114.00232 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47166 * 180.02562 * 4 3 2 6 6 H 1.09009 * 110.27600 * 307.08614 * 5 4 3 7 7 C 1.54591 * 110.31237 * 69.28014 * 5 4 3 8 8 C 1.54940 * 102.92133 * 140.87300 * 7 5 4 9 9 N 1.48538 * 103.22630 * 322.58766 * 8 7 5 10 10 C 1.46897 * 110.99513 * 159.72013 * 9 8 7 11 11 C 1.53002 * 109.47564 * 52.60544 * 10 9 8 12 12 H 1.08997 * 109.46975 * 305.00071 * 11 10 9 13 13 C 1.47205 * 109.46663 * 64.99791 * 11 10 9 14 14 N 8.61734 * 139.25491 * 45.44018 * 2 1 3 15 15 C 1.52999 * 109.47429 * 184.99350 * 11 10 9 16 16 C 1.50696 * 109.47110 * 174.99770 * 15 11 10 17 17 H 1.07997 * 120.00012 * 0.02562 * 16 15 11 18 18 C 1.37877 * 119.99842 * 180.02562 * 16 15 11 19 19 N 1.31516 * 120.00069 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99806 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46845 * 90.00621 * 20 18 16 22 22 H 1.48503 * 109.47399 * 210.00111 * 20 18 16 23 23 H 1.48498 * 109.47295 * 330.00717 * 20 18 16 24 24 C 1.47902 * 105.81965 * 39.20771 * 9 8 7 25 25 H 1.08997 * 109.47414 * 60.00005 * 1 2 3 26 26 H 1.09001 * 109.47116 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47220 * 299.99755 * 1 2 3 28 28 H 1.09005 * 109.47220 * 240.00245 * 2 1 3 29 29 H 1.08997 * 109.47414 * 119.99995 * 2 1 3 30 30 H 1.09001 * 109.46966 * 59.99851 * 4 3 2 31 31 H 1.09000 * 109.46850 * 300.00021 * 4 3 2 32 32 H 1.08994 * 110.73149 * 259.23264 * 7 5 4 33 33 H 1.09001 * 110.72133 * 22.34193 * 7 5 4 34 34 H 1.09004 * 110.66759 * 204.15529 * 8 7 5 35 35 H 1.08994 * 110.66865 * 81.02478 * 8 7 5 36 36 H 1.09001 * 109.47366 * 292.60479 * 10 9 8 37 37 H 1.09003 * 109.47223 * 172.60399 * 10 9 8 38 38 H 1.09008 * 109.46748 * 55.00091 * 15 11 10 39 39 H 1.08991 * 109.47440 * 295.00296 * 15 11 10 40 40 H 0.97000 * 119.99838 * 359.97438 * 19 18 16 41 41 H 1.09006 * 109.91410 * 94.01789 * 24 9 8 42 42 H 1.08990 * 109.91509 * 215.11989 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 0.0001 6 1 3.3266 3.4628 -0.8151 7 6 3.4688 3.5882 1.3567 8 6 4.6723 4.5285 1.6174 9 7 5.8290 3.7499 1.1054 10 6 6.9709 4.6292 0.8210 11 6 7.2759 5.4838 2.0528 12 1 6.3770 6.0222 2.3531 13 6 7.7187 4.6148 3.1554 14 7 8.0586 3.9464 4.0076 15 6 8.3825 6.4857 1.7173 16 6 8.5977 7.4077 2.8897 17 1 8.0048 7.2906 3.7847 18 6 9.5515 8.4009 2.8196 19 7 10.2731 8.5439 1.7294 20 14 9.8187 9.5434 4.2731 21 1 10.8460 8.9642 5.1756 22 1 10.2797 10.8675 3.7838 23 1 8.5430 9.7066 5.0156 24 6 5.3532 3.0838 -0.1264 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8333 0.9767 -0.8908 31 1 3.8340 0.9764 0.8892 32 1 2.5433 4.1587 1.2797 33 1 3.3903 2.8321 2.1378 34 1 4.7828 4.7253 2.6838 35 1 4.5599 5.4601 1.0628 36 1 6.7289 5.2782 -0.0206 37 1 7.8430 4.0237 0.5739 38 1 8.0911 7.0699 0.8443 39 1 9.3063 5.9485 1.5032 40 1 10.1345 7.9504 0.9748 41 1 5.5974 3.6936 -0.9963 42 1 5.8162 2.1015 -0.2199 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247376103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:39 Heat of formation + Delta-G solvation = -58.436431 kcal Electronic energy + Delta-G solvation = -19931.523877 eV Core-core repulsion = 16910.004866 eV Total energy + Delta-G solvation = -3021.519011 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.55424 -38.93570 -37.86363 -35.95270 -34.65368 -32.73531 -31.48174 -30.33881 -28.08434 -25.80496 -24.68066 -23.96040 -23.63590 -22.00621 -21.05299 -19.10071 -18.16968 -17.86190 -17.06613 -16.71085 -16.57888 -15.81054 -15.61112 -15.36532 -14.95560 -14.74272 -14.60950 -14.09526 -14.05055 -13.66751 -13.49288 -13.37943 -13.19740 -13.09146 -12.81333 -12.51519 -12.44600 -12.32213 -12.15907 -12.06260 -11.95495 -11.91406 -11.75345 -11.52447 -11.46248 -10.68857 -10.54154 -10.51835 -9.37710 -8.64985 -6.36018 1.53357 1.59775 1.77890 1.94199 2.01107 2.55186 2.67774 2.97316 3.16841 3.24386 3.64387 3.69814 3.91605 4.08704 4.16956 4.21741 4.34530 4.37021 4.41756 4.46380 4.50793 4.55835 4.58202 4.66062 4.68453 4.83995 4.87543 4.89194 4.96847 5.03164 5.07784 5.15680 5.17681 5.27151 5.28776 5.36253 5.89833 5.92982 6.04480 6.19777 6.29038 6.61406 6.77959 7.41536 8.77262 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.042546 B = 0.003158 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.959487 B = 8863.035566 C = 8930.669996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.407 6.407 4 C 0.075 3.925 5 C -0.090 4.090 6 H 0.091 0.909 7 C -0.105 4.105 8 C 0.026 3.974 9 N -0.535 5.535 10 C 0.063 3.937 11 C 0.024 3.976 12 H 0.114 0.886 13 C 0.262 3.738 14 N -0.506 5.506 15 C 0.022 3.978 16 C -0.615 4.615 17 H 0.044 0.956 18 C -0.030 4.030 19 N -0.935 5.935 20 Si 1.107 2.893 21 H -0.284 1.284 22 H -0.278 1.278 23 H -0.269 1.269 24 C 0.044 3.956 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.032 0.968 39 H -0.002 1.002 40 H 0.262 0.738 41 H 0.064 0.936 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.580 -13.675 -7.949 24.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.327 6.327 4 C -0.002 4.002 5 C -0.109 4.109 6 H 0.109 0.891 7 C -0.143 4.143 8 C -0.101 4.101 9 N -0.259 5.259 10 C -0.066 4.066 11 C 0.002 3.998 12 H 0.132 0.868 13 C -0.054 4.054 14 N -0.184 5.184 15 C -0.017 4.017 16 C -0.653 4.653 17 H 0.063 0.937 18 C -0.229 4.229 19 N -0.572 5.572 20 Si 0.930 3.070 21 H -0.210 1.210 22 H -0.204 1.204 23 H -0.194 1.194 24 C -0.084 4.084 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.050 0.950 39 H 0.017 0.983 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.123 -13.640 -5.761 22.637 hybrid contribution -0.631 -0.650 -1.301 1.586 sum -17.754 -14.290 -7.062 23.860 Atomic orbital electron populations 1.21755 0.92959 1.03257 1.02661 1.22625 0.96313 0.83115 1.00622 1.87849 1.21636 1.27693 1.95552 1.22560 0.80850 0.96168 1.00584 1.21926 0.94808 0.95263 0.98912 0.89096 1.22421 0.97202 0.98220 0.96462 1.23340 0.89982 0.96230 1.00557 1.64830 1.05705 1.27915 1.27485 1.22290 0.94985 0.94493 0.94827 1.19103 1.00462 0.92021 0.88173 0.86788 1.29238 0.91187 0.91575 0.93416 1.80938 1.11353 1.13505 1.12571 1.19157 0.92584 0.92895 0.97071 1.22372 1.23129 1.17831 1.01957 0.93719 1.27067 0.92832 0.99614 1.03369 1.70883 1.40914 1.40112 1.05324 0.83037 0.76862 0.74818 0.72262 1.21017 1.20360 1.19426 1.22867 0.93738 1.00422 0.91331 0.92114 0.89343 0.92521 0.92504 0.93247 0.92070 0.93498 0.89965 0.91794 0.91285 0.92163 0.90909 0.90321 0.94980 0.98337 0.92849 0.91816 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.28 71.98 0.74 -1.03 16 2 C 0.05 0.72 6.66 71.98 0.48 1.20 16 3 O -0.41 -7.94 10.23 -148.98 -1.52 -9.46 16 4 C 0.07 1.32 5.02 71.98 0.36 1.68 16 5 C -0.09 -1.66 3.26 -9.92 -0.03 -1.69 16 6 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 7 C -0.10 -2.17 6.51 31.80 0.21 -1.96 16 8 C 0.03 0.63 5.09 86.65 0.44 1.07 16 9 N -0.53 -13.88 5.10 -883.00 -4.50 -18.38 16 10 C 0.06 1.82 4.39 86.30 0.38 2.19 16 11 C 0.02 0.89 1.90 -12.60 -0.02 0.86 16 12 H 0.11 3.95 6.52 -2.39 -0.02 3.93 16 13 C 0.26 11.13 13.67 89.45 1.22 12.35 16 14 N -0.51 -23.39 18.53 20.00 0.37 -23.02 16 15 C 0.02 1.00 3.73 29.85 0.11 1.11 16 16 C -0.61 -33.15 8.60 25.60 0.22 -32.93 16 17 H 0.04 2.42 7.59 -2.91 -0.02 2.40 16 18 C -0.03 -1.68 5.46 84.65 0.46 -1.21 16 19 N -0.94 -55.38 13.65 21.45 0.29 -55.08 16 20 Si 1.11 50.07 29.90 68.60 2.05 52.12 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 C 0.04 0.88 6.35 86.45 0.55 1.43 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.88 7.99 -2.39 -0.02 0.87 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 1.44 7.76 -2.39 -0.02 1.42 16 34 H 0.07 1.85 7.56 -2.38 -0.02 1.83 16 35 H 0.06 1.35 8.01 -2.39 -0.02 1.33 16 36 H 0.07 1.84 7.81 -2.39 -0.02 1.82 16 37 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.03 1.46 8.01 -2.38 -0.02 1.44 16 39 H 0.00 -0.09 8.01 -2.39 -0.02 -0.10 16 40 H 0.26 15.31 7.22 -92.71 -0.67 14.64 16 41 H 0.06 1.14 7.57 -2.38 -0.02 1.12 16 42 H 0.08 1.58 7.69 -2.39 -0.02 1.57 16 Total: -1.00 -65.72 344.67 2.88 -62.85 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 1.07 Total: 7.91 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 5.12 Total: -16.92 kcal Atomic # 7 Polarization: -92.65 SS G_CDS: -3.84 Total: -96.49 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -1.52 Total: -9.46 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 2.05 Total: 52.12 kcal Total: -65.72 2.88 -62.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247376103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.411 kcal (2) G-P(sol) polarization free energy of solvation -65.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds