Wall clock time and date at job start Mon Mar 30 2020 01:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.47854 * 110.99822 * 2 1 4 4 C 1.54906 * 104.79502 * 213.63405 * 3 2 1 5 5 C 1.55151 * 101.65167 * 37.06948 * 4 3 2 6 6 C 1.47440 * 111.00376 * 239.15546 * 2 1 3 7 7 H 1.09000 * 109.88858 * 242.66176 * 6 2 1 8 8 C 1.50701 * 109.88492 * 3.85111 * 6 2 1 9 9 O 1.21278 * 120.00130 * 63.92309 * 8 6 2 10 10 N 1.34779 * 119.99762 * 243.91758 * 8 6 2 11 11 C 1.46927 * 120.63001 * 5.64914 * 10 8 6 12 12 C 1.52755 * 109.00592 * 233.58035 * 11 10 8 13 13 C 1.53045 * 109.38656 * 305.58954 * 12 11 10 14 14 C 1.53037 * 109.53619 * 61.23979 * 13 12 11 15 15 H 1.09001 * 109.49934 * 58.58725 * 14 13 12 16 16 C 1.50698 * 109.52276 * 178.66873 * 14 13 12 17 17 H 1.08002 * 120.00361 * 119.85714 * 16 14 13 18 18 C 1.37875 * 120.00183 * 299.85337 * 16 14 13 19 19 N 1.31522 * 120.00004 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 120.00345 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46821 * 60.00264 * 20 18 16 22 22 H 1.48497 * 109.47104 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47135 * 300.00558 * 20 18 16 24 24 C 1.46926 * 120.62912 * 185.92442 * 10 8 6 25 25 H 1.09000 * 109.47404 * 175.39803 * 1 2 3 26 26 H 1.09003 * 109.47311 * 295.39840 * 1 2 3 27 27 H 1.09001 * 109.47581 * 55.39448 * 1 2 3 28 28 H 1.08998 * 110.37030 * 332.46333 * 3 2 1 29 29 H 1.08995 * 110.37327 * 94.80594 * 3 2 1 30 30 H 1.08995 * 110.99240 * 278.97947 * 4 3 2 31 31 H 1.09001 * 111.02367 * 155.17247 * 4 3 2 32 32 H 1.08997 * 110.70104 * 205.95954 * 5 4 3 33 33 H 1.08994 * 110.85290 * 82.79893 * 5 4 3 34 34 H 1.08994 * 109.58681 * 353.41762 * 11 10 8 35 35 H 1.09001 * 109.58331 * 113.84268 * 11 10 8 36 36 H 1.09001 * 109.56387 * 185.55216 * 12 11 10 37 37 H 1.09004 * 109.36459 * 65.50347 * 12 11 10 38 38 H 1.08999 * 109.45843 * 301.22304 * 13 12 11 39 39 H 1.08997 * 109.44761 * 181.25584 * 13 12 11 40 40 H 0.96999 * 120.00142 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.58893 * 246.15866 * 24 10 8 42 42 H 1.09005 * 109.58847 * 6.44485 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9987 1.3803 0.0000 4 6 3.3046 1.3028 -0.8296 5 6 2.9158 0.2821 -1.9315 6 6 1.9974 -0.7057 -1.1818 7 1 2.5697 -1.5784 -0.8673 8 6 0.8611 -1.1292 -2.0765 9 8 0.1611 -0.2918 -2.6053 10 7 0.6228 -2.4386 -2.2892 11 6 1.3810 -3.4653 -1.5612 12 6 1.9986 -4.4346 -2.5674 13 6 0.9005 -4.9904 -3.4772 14 6 0.2457 -3.8425 -4.2490 15 1 1.0017 -3.3207 -4.8358 16 6 -0.8131 -4.3937 -5.1688 17 1 -1.8407 -4.0801 -5.0586 18 6 -0.4701 -5.2982 -6.1512 19 7 0.7811 -5.6805 -6.2852 20 14 -1.7827 -5.9819 -7.2910 21 1 -2.4203 -4.8671 -8.0367 22 1 -1.1604 -6.9283 -8.2512 23 1 -2.8111 -6.6941 -6.4907 24 6 -0.3958 -2.8665 -3.2578 25 1 -0.3634 -1.0243 -0.0825 26 1 -0.3634 0.4408 0.9283 27 1 -0.3634 0.5836 -0.8458 28 1 1.2888 2.0592 -0.4724 29 1 2.2146 1.7039 1.0182 30 1 4.1301 0.9283 -0.2243 31 1 3.5500 2.2719 -1.2641 32 1 3.8000 -0.2278 -2.3137 33 1 2.3752 0.7724 -2.7411 34 1 2.1716 -2.9918 -0.9794 35 1 0.7116 -4.0108 -0.8961 36 1 2.4802 -5.2550 -2.0355 37 1 2.7381 -3.9073 -3.1701 38 1 0.1486 -5.4962 -2.8715 39 1 1.3367 -5.6991 -4.1811 40 1 1.0224 -6.3172 -6.9761 41 1 -1.2129 -3.3621 -2.7338 42 1 -0.7787 -1.9976 -3.7932 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259694867.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:35 Heat of formation + Delta-G solvation = -28.064093 kcal Electronic energy + Delta-G solvation = -21566.384575 eV Core-core repulsion = 18546.182607 eV Total energy + Delta-G solvation = -3020.201968 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.57407 -38.07879 -36.47994 -33.54240 -32.10248 -31.39562 -30.58405 -29.10078 -25.63700 -25.12676 -24.67267 -22.00350 -21.56283 -21.29014 -19.44566 -18.10297 -17.36354 -16.36194 -15.99801 -15.54287 -14.87257 -14.60372 -14.55179 -13.87409 -13.68441 -13.38114 -13.06675 -12.79730 -12.73953 -12.41522 -12.14765 -11.87144 -11.76492 -11.49740 -11.25320 -11.15697 -10.98082 -10.88926 -10.79578 -10.70069 -10.23742 -9.96639 -9.86274 -9.61264 -9.42358 -8.87633 -8.43034 -8.25144 -7.86661 -6.03873 -4.11185 2.86117 3.30149 3.34574 3.36938 3.50155 4.05557 4.40851 4.50240 4.60905 4.81774 5.03569 5.10263 5.26083 5.37342 5.45569 5.53461 5.61874 5.65873 5.67877 5.76864 5.81601 5.87846 6.00370 6.07925 6.11155 6.18211 6.31328 6.37648 6.47070 6.63541 6.77136 6.83529 6.90482 6.94840 7.14795 7.31012 7.66583 7.88532 7.97751 8.05056 8.34757 8.58143 8.92091 9.53809 11.01633 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035014 B = 0.004805 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.481129 B = 5825.310389 C = 6005.331185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 N -0.510 5.510 3 C 0.039 3.961 4 C -0.126 4.126 5 C -0.129 4.129 6 C 0.043 3.957 7 H 0.107 0.893 8 C 0.502 3.498 9 O -0.552 6.552 10 N -0.597 5.597 11 C 0.104 3.896 12 C -0.136 4.136 13 C -0.112 4.112 14 C 0.041 3.959 15 H 0.028 0.972 16 C -0.515 4.515 17 H 0.056 0.944 18 C 0.064 3.936 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.117 3.883 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.036 0.964 39 H 0.095 0.905 40 H 0.261 0.739 41 H 0.054 0.946 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.430 8.295 12.348 15.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 N -0.235 5.235 3 C -0.089 4.089 4 C -0.164 4.164 5 C -0.168 4.168 6 C -0.067 4.067 7 H 0.125 0.875 8 C 0.289 3.711 9 O -0.431 6.431 10 N -0.329 5.329 11 C -0.018 4.018 12 C -0.174 4.174 13 C -0.150 4.150 14 C 0.022 3.978 15 H 0.047 0.953 16 C -0.554 4.554 17 H 0.074 0.926 18 C -0.137 4.137 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.004 4.004 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.301 8.334 12.406 15.857 hybrid contribution -0.966 -0.233 -1.350 1.676 sum 4.335 8.101 11.056 14.375 Atomic orbital electron populations 1.22851 0.87274 1.02535 1.01897 1.64034 1.08869 1.14498 1.36089 1.23125 0.95795 0.89615 1.00368 1.22682 0.97572 0.99354 0.96752 1.22750 0.99181 0.96430 0.98426 1.22833 0.94936 0.99172 0.89803 0.87507 1.20750 0.85734 0.82657 0.81960 1.90627 1.50022 1.50906 1.51571 1.48378 1.38451 1.04888 1.41182 1.21812 0.95347 0.90089 0.94591 1.21942 0.99833 0.97760 0.97853 1.21628 0.95489 1.00814 0.97099 1.18959 0.95689 0.91437 0.91711 0.95344 1.21032 0.94229 1.25294 1.14836 0.92568 1.24930 0.95354 0.96291 0.97156 1.69864 1.16456 1.33004 1.33443 0.86638 0.81796 0.78860 0.80600 1.20234 1.21277 1.20239 1.22007 0.89230 0.99261 0.89925 0.91589 0.91705 0.92321 0.93132 0.90043 0.90528 0.90598 0.90226 0.90119 0.90443 0.91838 0.92329 0.92384 0.94565 0.88629 0.92899 0.92762 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 8.30 60.06 0.50 0.54 16 2 N -0.51 -6.88 5.44 -232.96 -1.27 -8.14 16 3 C 0.04 0.44 6.73 -2.29 -0.02 0.42 16 4 C -0.13 -1.28 7.08 -24.59 -0.17 -1.45 16 5 C -0.13 -1.66 6.43 -24.90 -0.16 -1.82 16 6 C 0.04 0.62 3.53 -67.88 -0.24 0.38 16 7 H 0.11 1.41 5.21 -51.93 -0.27 1.14 16 8 C 0.50 9.09 4.61 -10.98 -0.05 9.04 16 9 O -0.55 -11.66 13.60 5.56 0.08 -11.59 16 10 N -0.60 -11.11 2.98 -173.03 -0.52 -11.63 16 11 C 0.10 1.64 6.33 -3.93 -0.02 1.62 16 12 C -0.14 -2.39 6.06 -26.83 -0.16 -2.55 16 13 C -0.11 -2.50 4.96 -26.69 -0.13 -2.63 16 14 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 15 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 16 C -0.52 -13.93 8.56 -34.44 -0.29 -14.23 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 19 N -0.89 -24.83 11.32 55.43 0.63 -24.20 16 20 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.12 2.54 5.64 -3.71 -0.02 2.52 16 25 H 0.07 1.01 7.22 -51.93 -0.38 0.64 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.96 5.95 -51.93 -0.31 0.66 16 28 H 0.05 0.60 7.70 -51.93 -0.40 0.21 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.21 7.40 -51.93 -0.38 0.82 16 34 H 0.08 1.02 5.07 -51.93 -0.26 0.75 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 2.41 6.05 -51.93 -0.31 2.10 16 40 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 41 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.08 1.80 7.04 -51.93 -0.37 1.44 16 LS Contribution 317.25 15.07 4.78 4.78 Total: -1.00 -29.35 317.25 -9.27 -38.62 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.87 Total: 1.84 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -1.08 Total: -5.71 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: -1.16 Total: -43.97 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.59 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.35 -9.27 -38.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259694867.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.554 kcal (2) G-P(sol) polarization free energy of solvation -29.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds