Wall clock time and date at job start Mon Mar 30 2020 01:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.47854 * 110.99822 * 2 1 4 4 C 1.54906 * 104.79502 * 213.63405 * 3 2 1 5 5 C 1.55151 * 101.65167 * 37.06948 * 4 3 2 6 6 C 1.47440 * 111.00376 * 239.15546 * 2 1 3 7 7 H 1.09000 * 109.88858 * 242.66176 * 6 2 1 8 8 C 1.50701 * 109.88492 * 3.85111 * 6 2 1 9 9 O 1.21278 * 120.00130 * 63.92309 * 8 6 2 10 10 N 1.34779 * 119.99762 * 243.91758 * 8 6 2 11 11 C 1.46927 * 120.63001 * 5.64914 * 10 8 6 12 12 C 1.52755 * 109.00592 * 233.58035 * 11 10 8 13 13 C 1.53045 * 109.38656 * 305.58954 * 12 11 10 14 14 C 1.53037 * 109.53619 * 61.23979 * 13 12 11 15 15 H 1.09001 * 109.49934 * 58.58725 * 14 13 12 16 16 C 1.50698 * 109.52276 * 178.66873 * 14 13 12 17 17 H 1.08002 * 120.00361 * 119.85714 * 16 14 13 18 18 C 1.37875 * 120.00183 * 299.85337 * 16 14 13 19 19 N 1.31522 * 120.00004 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 120.00345 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46821 * 60.00264 * 20 18 16 22 22 H 1.48497 * 109.47104 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47135 * 300.00558 * 20 18 16 24 24 C 1.46926 * 120.62912 * 185.92442 * 10 8 6 25 25 H 1.09000 * 109.47404 * 175.39803 * 1 2 3 26 26 H 1.09003 * 109.47311 * 295.39840 * 1 2 3 27 27 H 1.09001 * 109.47581 * 55.39448 * 1 2 3 28 28 H 1.08998 * 110.37030 * 332.46333 * 3 2 1 29 29 H 1.08995 * 110.37327 * 94.80594 * 3 2 1 30 30 H 1.08995 * 110.99240 * 278.97947 * 4 3 2 31 31 H 1.09001 * 111.02367 * 155.17247 * 4 3 2 32 32 H 1.08997 * 110.70104 * 205.95954 * 5 4 3 33 33 H 1.08994 * 110.85290 * 82.79893 * 5 4 3 34 34 H 1.08994 * 109.58681 * 353.41762 * 11 10 8 35 35 H 1.09001 * 109.58331 * 113.84268 * 11 10 8 36 36 H 1.09001 * 109.56387 * 185.55216 * 12 11 10 37 37 H 1.09004 * 109.36459 * 65.50347 * 12 11 10 38 38 H 1.08999 * 109.45843 * 301.22304 * 13 12 11 39 39 H 1.08997 * 109.44761 * 181.25584 * 13 12 11 40 40 H 0.96999 * 120.00142 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.58893 * 246.15866 * 24 10 8 42 42 H 1.09005 * 109.58847 * 6.44485 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9987 1.3803 0.0000 4 6 3.3046 1.3028 -0.8296 5 6 2.9158 0.2821 -1.9315 6 6 1.9974 -0.7057 -1.1818 7 1 2.5697 -1.5784 -0.8673 8 6 0.8611 -1.1292 -2.0765 9 8 0.1611 -0.2918 -2.6053 10 7 0.6228 -2.4386 -2.2892 11 6 1.3810 -3.4653 -1.5612 12 6 1.9986 -4.4346 -2.5674 13 6 0.9005 -4.9904 -3.4772 14 6 0.2457 -3.8425 -4.2490 15 1 1.0017 -3.3207 -4.8358 16 6 -0.8131 -4.3937 -5.1688 17 1 -1.8407 -4.0801 -5.0586 18 6 -0.4701 -5.2982 -6.1512 19 7 0.7811 -5.6805 -6.2852 20 14 -1.7827 -5.9819 -7.2910 21 1 -2.4203 -4.8671 -8.0367 22 1 -1.1604 -6.9283 -8.2512 23 1 -2.8111 -6.6941 -6.4907 24 6 -0.3958 -2.8665 -3.2578 25 1 -0.3634 -1.0243 -0.0825 26 1 -0.3634 0.4408 0.9283 27 1 -0.3634 0.5836 -0.8458 28 1 1.2888 2.0592 -0.4724 29 1 2.2146 1.7039 1.0182 30 1 4.1301 0.9283 -0.2243 31 1 3.5500 2.2719 -1.2641 32 1 3.8000 -0.2278 -2.3137 33 1 2.3752 0.7724 -2.7411 34 1 2.1716 -2.9918 -0.9794 35 1 0.7116 -4.0108 -0.8961 36 1 2.4802 -5.2550 -2.0355 37 1 2.7381 -3.9073 -3.1701 38 1 0.1486 -5.4962 -2.8715 39 1 1.3367 -5.6991 -4.1811 40 1 1.0224 -6.3172 -6.9761 41 1 -1.2129 -3.3621 -2.7338 42 1 -0.7787 -1.9976 -3.7932 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259694867.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:35 Heat of formation + Delta-G solvation = -47.348668 kcal Electronic energy + Delta-G solvation = -21567.220817 eV Core-core repulsion = 18546.182607 eV Total energy + Delta-G solvation = -3021.038210 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.89667 -39.43000 -37.96871 -35.41723 -33.12204 -33.10524 -32.22270 -30.33645 -27.11758 -26.65449 -26.18706 -23.55032 -23.00764 -22.19773 -21.07577 -19.54179 -18.80092 -18.23024 -17.26700 -16.83954 -16.55406 -16.00303 -15.92339 -15.17637 -15.09030 -14.91945 -14.68143 -14.22400 -14.15530 -13.81399 -13.58981 -13.23515 -13.01928 -12.86843 -12.76749 -12.60501 -12.49319 -12.30582 -12.05762 -11.88564 -11.86380 -11.70398 -11.55332 -11.32125 -10.97466 -10.78200 -10.44840 -9.63891 -9.27796 -8.12393 -6.27761 1.40343 1.41561 1.46667 1.49734 2.04996 2.42343 2.98588 3.14109 3.35092 3.65621 3.70118 3.90828 4.16609 4.22285 4.27121 4.33885 4.39079 4.50798 4.52975 4.56981 4.62159 4.76634 4.81855 4.85285 4.89697 4.93883 4.95773 5.01916 5.06192 5.10002 5.25274 5.28637 5.45560 5.53688 5.59403 5.75156 5.86729 5.90779 6.10960 6.32333 6.50257 6.80865 7.13141 7.40387 8.91170 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035014 B = 0.004805 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.481129 B = 5825.310389 C = 6005.331185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.505 5.505 3 C 0.033 3.967 4 C -0.114 4.114 5 C -0.134 4.134 6 C 0.048 3.952 7 H 0.128 0.872 8 C 0.497 3.503 9 O -0.590 6.590 10 N -0.603 5.603 11 C 0.106 3.894 12 C -0.127 4.127 13 C -0.106 4.106 14 C 0.043 3.957 15 H -0.013 1.013 16 C -0.541 4.541 17 H 0.050 0.950 18 C 0.019 3.981 19 N -0.912 5.912 20 Si 0.954 3.046 21 H -0.277 1.277 22 H -0.281 1.281 23 H -0.268 1.268 24 C 0.131 3.869 25 H 0.052 0.948 26 H 0.088 0.912 27 H 0.029 0.971 28 H 0.037 0.963 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.047 0.953 38 H 0.036 0.964 39 H 0.063 0.937 40 H 0.262 0.738 41 H 0.058 0.942 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.639 8.326 14.519 18.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.230 5.230 3 C -0.094 4.094 4 C -0.151 4.151 5 C -0.172 4.172 6 C -0.063 4.063 7 H 0.145 0.855 8 C 0.286 3.714 9 O -0.471 6.471 10 N -0.334 5.334 11 C -0.016 4.016 12 C -0.165 4.165 13 C -0.144 4.144 14 C 0.024 3.976 15 H 0.005 0.995 16 C -0.579 4.579 17 H 0.068 0.932 18 C -0.180 4.180 19 N -0.551 5.551 20 Si 0.780 3.220 21 H -0.202 1.202 22 H -0.206 1.206 23 H -0.193 1.193 24 C 0.009 3.991 25 H 0.071 0.929 26 H 0.107 0.893 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.069 0.931 34 H 0.132 0.868 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.528 8.365 14.601 18.049 hybrid contribution -1.353 -0.198 -2.048 2.463 sum 5.175 8.167 12.553 15.845 Atomic orbital electron populations 1.22746 0.87987 1.01308 1.01882 1.64185 1.08105 1.15862 1.34859 1.23288 0.95991 0.88107 1.02019 1.22701 0.97498 0.99338 0.95607 1.22802 0.99040 0.96919 0.98483 1.22960 0.93422 1.00381 0.89488 0.85513 1.21560 0.86155 0.81887 0.81792 1.90612 1.51528 1.51875 1.53084 1.48448 1.38147 1.06037 1.40768 1.22022 0.96268 0.89270 0.93995 1.21844 0.98025 0.99071 0.97537 1.21426 0.96690 0.99207 0.97072 1.18856 0.94343 0.92436 0.91977 0.99485 1.21394 0.94639 1.25801 1.16101 0.93151 1.25666 0.97342 0.96511 0.98494 1.69996 1.17943 1.33263 1.33865 0.85673 0.79441 0.78169 0.78742 1.20210 1.20613 1.19334 1.21535 0.90062 0.97404 0.90111 0.92936 0.89339 0.95196 0.94404 0.87484 0.88246 0.89119 0.88629 0.93084 0.86778 0.90248 0.88991 0.93374 0.94533 0.91799 0.92855 0.92416 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 8.30 127.69 1.06 1.31 16 2 N -0.51 -12.37 5.44 -890.94 -4.85 -17.22 16 3 C 0.03 0.66 6.73 86.77 0.58 1.24 16 4 C -0.11 -1.93 7.08 31.98 0.23 -1.70 16 5 C -0.13 -3.19 6.43 31.78 0.20 -2.99 16 6 C 0.05 1.28 3.53 44.51 0.16 1.44 16 7 H 0.13 2.85 5.21 -2.39 -0.01 2.84 16 8 C 0.50 17.99 4.61 87.66 0.40 18.40 16 9 O -0.59 -25.87 13.60 -3.02 -0.04 -25.91 16 10 N -0.60 -22.30 2.98 -819.74 -2.44 -24.74 16 11 C 0.11 3.06 6.33 86.22 0.55 3.61 16 12 C -0.13 -4.25 6.06 30.53 0.19 -4.07 16 13 C -0.11 -4.76 4.96 30.62 0.15 -4.61 16 14 C 0.04 2.19 2.25 -11.46 -0.03 2.17 16 15 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 16 C -0.54 -30.27 8.56 25.60 0.22 -30.05 16 17 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 18 C 0.02 1.07 5.30 84.65 0.45 1.52 16 19 N -0.91 -52.16 11.32 21.45 0.24 -51.91 16 20 Si 0.95 43.76 29.54 68.60 2.03 45.78 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 24 C 0.13 5.92 5.64 86.36 0.49 6.40 16 25 H 0.05 1.56 7.22 -2.39 -0.02 1.54 16 26 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.03 0.99 5.95 -2.39 -0.01 0.98 16 28 H 0.04 0.85 7.70 -2.39 -0.02 0.83 16 29 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.05 1.53 7.40 -2.39 -0.02 1.51 16 34 H 0.11 2.51 5.07 -2.39 -0.01 2.50 16 35 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.06 3.30 6.05 -2.39 -0.01 3.28 16 40 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 41 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.05 2.47 7.04 -2.38 -0.02 2.46 16 Total: -1.00 -66.92 317.25 0.57 -66.35 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.99 Total: 14.98 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 4.65 Total: -7.33 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -7.05 Total: -93.88 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.04 Total: -25.91 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -66.92 0.57 -66.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259694867.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.001 kcal (2) G-P(sol) polarization free energy of solvation -66.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds