Wall clock time and date at job start Mon Mar 30 2020 01:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48553 * 111.00069 * 2 1 4 4 C 1.54388 * 104.59425 * 200.95888 * 3 2 1 5 5 C 1.54257 * 105.05870 * 23.85685 * 4 3 2 6 6 C 1.48564 * 110.99854 * 244.58062 * 2 1 3 7 7 H 1.09006 * 110.40947 * 40.14644 * 6 2 1 8 8 C 1.50694 * 110.41385 * 277.82085 * 6 2 1 9 9 O 1.21282 * 120.00250 * 341.45645 * 8 6 2 10 10 N 1.34781 * 120.00176 * 161.45253 * 8 6 2 11 11 C 1.46926 * 120.62904 * 359.72215 * 10 8 6 12 12 C 1.52759 * 109.00706 * 233.58539 * 11 10 8 13 13 C 1.53037 * 109.38314 * 305.58759 * 12 11 10 14 14 C 1.53042 * 109.54116 * 61.24266 * 13 12 11 15 15 H 1.08995 * 109.49990 * 58.58446 * 14 13 12 16 16 C 1.50702 * 109.52498 * 178.67196 * 14 13 12 17 17 H 1.07998 * 120.00011 * 119.85754 * 16 14 13 18 18 C 1.37869 * 119.99727 * 299.84657 * 16 14 13 19 19 N 1.31514 * 120.00284 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 120.00008 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47373 * 60.00185 * 20 18 16 22 22 H 1.48502 * 109.47286 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47380 * 300.00194 * 20 18 16 24 24 C 1.46922 * 120.62994 * 180.02562 * 10 8 6 25 25 H 1.09002 * 109.47401 * 175.41655 * 1 2 3 26 26 H 1.09001 * 109.46874 * 55.41668 * 1 2 3 27 27 H 1.09004 * 109.46970 * 295.41801 * 1 2 3 28 28 H 1.08994 * 110.41440 * 319.73898 * 3 2 1 29 29 H 1.09002 * 110.41251 * 82.18377 * 3 2 1 30 30 H 1.09000 * 110.32277 * 264.96038 * 4 3 2 31 31 H 1.09000 * 110.40795 * 142.79376 * 4 3 2 32 32 H 1.09000 * 110.32567 * 241.10153 * 5 4 3 33 33 H 1.08993 * 110.41227 * 118.93760 * 5 4 3 34 34 H 1.09001 * 109.58754 * 353.41594 * 11 10 8 35 35 H 1.08994 * 109.58561 * 113.84119 * 11 10 8 36 36 H 1.09004 * 109.56261 * 185.55387 * 12 11 10 37 37 H 1.09005 * 109.38972 * 65.51414 * 12 11 10 38 38 H 1.09006 * 109.45869 * 301.21888 * 13 12 11 39 39 H 1.09004 * 109.46276 * 181.26324 * 13 12 11 40 40 H 0.97002 * 120.00360 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.58486 * 246.15596 * 24 10 8 42 42 H 1.09001 * 109.59113 * 6.43301 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2500 -0.5344 5 6 3.4433 -0.0540 -1.3586 6 6 2.0014 -0.5953 -1.2527 7 1 1.4085 -0.2729 -2.1087 8 6 2.0103 -2.0993 -1.1575 9 8 1.9443 -2.6387 -0.0733 10 7 2.0916 -2.8449 -2.2773 11 6 2.1660 -2.2061 -3.5983 12 6 1.0657 -2.7782 -4.4903 13 6 1.1797 -4.3039 -4.5223 14 6 0.9961 -4.8607 -3.1086 15 1 0.0234 -4.5574 -2.7216 16 6 1.0761 -6.3652 -3.1456 17 1 1.8379 -6.8795 -2.5787 18 6 0.1764 -7.0849 -3.9028 19 7 -0.7512 -6.4585 -4.5933 20 14 0.2749 -8.9497 -3.9481 21 1 0.0998 -9.4882 -2.5752 22 1 -0.7962 -9.4808 -4.8289 23 1 1.5999 -9.3628 -4.4765 24 6 2.1008 -4.3121 -2.2006 25 1 -0.3634 -1.0244 -0.0821 26 1 -0.3633 0.5833 -0.8461 27 1 -0.3633 0.4411 0.9282 28 1 1.4099 2.0211 -0.6602 29 1 2.0079 1.7916 1.0121 30 1 4.1484 1.1746 0.2935 31 1 3.6955 2.0992 -1.1695 32 1 4.1483 -0.7694 -0.9353 33 1 3.6942 0.1537 -2.3987 34 1 2.0260 -1.1303 -3.4924 35 1 3.1384 -2.4077 -4.0474 36 1 1.1732 -2.3840 -5.5009 37 1 0.0919 -2.4945 -4.0909 38 1 2.1627 -4.5868 -4.8992 39 1 0.4091 -4.7121 -5.1763 40 1 -1.3840 -6.9648 -5.1264 41 1 3.0678 -4.6893 -2.5333 42 1 1.9206 -4.6255 -1.1723 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259694869.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:38 Heat of formation + Delta-G solvation = -32.740975 kcal Electronic energy + Delta-G solvation = -21397.765724 eV Core-core repulsion = 18377.360952 eV Total energy + Delta-G solvation = -3020.404773 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.15245 -38.15612 -36.47005 -33.50976 -32.26373 -31.32854 -30.54626 -29.06614 -25.74652 -25.09814 -24.59090 -22.00862 -21.61201 -21.04658 -19.53319 -18.29322 -17.12895 -16.29040 -15.96142 -15.53552 -14.74286 -14.41789 -14.18477 -14.07693 -13.83407 -13.51161 -13.05334 -12.87217 -12.66791 -12.39775 -12.17196 -12.02490 -11.87200 -11.55913 -11.47594 -11.13818 -10.94997 -10.83454 -10.75347 -10.74272 -10.30126 -9.95954 -9.77718 -9.44392 -9.21123 -8.84537 -8.43259 -8.36937 -7.85151 -6.01568 -4.08648 3.07770 3.31985 3.36186 3.37819 3.43397 4.09441 4.43175 4.53367 4.54404 4.82437 4.99621 5.05400 5.27430 5.31247 5.36493 5.39391 5.45605 5.52946 5.63086 5.67424 5.73073 5.78495 5.92360 6.00348 6.04277 6.09983 6.32646 6.39918 6.48733 6.66244 6.69919 6.83098 6.92573 7.01738 7.18028 7.34086 7.69093 7.92554 8.06169 8.07780 8.38465 8.76153 8.95110 9.56248 11.03984 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035172 B = 0.004686 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.897284 B = 5973.374562 C = 6121.555728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.491 5.491 3 C 0.032 3.968 4 C -0.122 4.122 5 C -0.111 4.111 6 C 0.042 3.958 7 H 0.072 0.928 8 C 0.518 3.482 9 O -0.529 6.529 10 N -0.605 5.605 11 C 0.109 3.891 12 C -0.136 4.136 13 C -0.112 4.112 14 C 0.041 3.959 15 H 0.028 0.972 16 C -0.514 4.514 17 H 0.057 0.943 18 C 0.064 3.936 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.118 3.882 25 H 0.073 0.927 26 H 0.027 0.973 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.036 0.964 39 H 0.095 0.905 40 H 0.261 0.739 41 H 0.054 0.946 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.606 16.138 1.952 17.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.215 5.215 3 C -0.096 4.096 4 C -0.160 4.160 5 C -0.149 4.149 6 C -0.070 4.070 7 H 0.090 0.910 8 C 0.304 3.696 9 O -0.405 6.405 10 N -0.338 5.338 11 C -0.014 4.014 12 C -0.174 4.174 13 C -0.150 4.150 14 C 0.022 3.978 15 H 0.046 0.954 16 C -0.553 4.553 17 H 0.075 0.925 18 C -0.138 4.138 19 N -0.529 5.529 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.002 4.002 25 H 0.092 0.908 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.113 0.887 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.569 15.494 2.902 16.718 hybrid contribution -0.427 -0.552 -0.983 1.206 sum 5.142 14.942 1.919 15.918 Atomic orbital electron populations 1.22529 0.87371 1.02715 1.00731 1.65067 1.08557 1.14228 1.33609 1.23156 0.95174 0.89962 1.01344 1.22281 0.96835 0.97091 0.99766 1.22215 0.94692 0.97363 1.00678 1.22709 0.97606 0.93713 0.92955 0.90986 1.20088 0.77122 0.88209 0.84215 1.90662 1.49234 1.73288 1.27275 1.48307 1.71942 1.08230 1.05364 1.21670 0.99752 0.96166 0.83809 1.21937 0.97698 1.00120 0.97654 1.21623 1.01533 0.90090 1.01723 1.18952 0.93250 0.94850 0.90789 0.95371 1.21045 1.15071 0.90806 1.28351 0.92518 1.24927 0.95084 0.98439 0.95309 1.69863 1.17588 1.35297 1.30119 0.86640 0.77612 0.85614 0.78034 1.20206 1.21324 1.20253 1.21964 1.00247 0.75840 1.02195 0.90792 0.95481 0.90987 0.93801 0.89817 0.90718 0.91092 0.90454 0.90569 0.91423 0.91923 0.92475 0.92539 0.94552 0.88677 0.92943 0.92801 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.44 60.07 0.57 0.77 16 2 N -0.49 -6.99 4.94 -231.71 -1.14 -8.14 16 3 C 0.03 0.33 6.49 -2.18 -0.01 0.32 16 4 C -0.12 -1.15 7.00 -25.35 -0.18 -1.33 16 5 C -0.11 -1.28 6.41 -25.35 -0.16 -1.44 16 6 C 0.04 0.60 1.70 -67.22 -0.11 0.49 16 7 H 0.07 0.95 6.35 -51.93 -0.33 0.62 16 8 C 0.52 9.75 6.57 -10.99 -0.07 9.68 16 9 O -0.53 -12.07 16.01 5.56 0.09 -11.99 16 10 N -0.60 -11.39 2.98 -173.06 -0.52 -11.90 16 11 C 0.11 1.69 6.27 -3.93 -0.02 1.67 16 12 C -0.14 -2.40 6.06 -26.84 -0.16 -2.56 16 13 C -0.11 -2.50 4.96 -26.69 -0.13 -2.63 16 14 C 0.04 1.01 2.25 -91.67 -0.21 0.80 16 15 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 16 C -0.51 -13.99 8.56 -34.44 -0.29 -14.29 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 19 N -0.89 -25.01 11.32 55.43 0.63 -24.38 16 20 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.12 2.61 5.66 -3.73 -0.02 2.59 16 25 H 0.07 1.15 7.96 -51.93 -0.41 0.74 16 26 H 0.03 0.31 7.97 -51.93 -0.41 -0.10 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.41 7.90 -51.93 -0.41 -0.01 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 1.00 7.85 -51.93 -0.41 0.60 16 33 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 34 H 0.07 0.85 5.36 -51.93 -0.28 0.57 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 2.41 6.05 -51.93 -0.31 2.10 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.08 1.87 7.00 -51.93 -0.36 1.51 16 LS Contribution 324.75 15.07 4.89 4.89 Total: -1.00 -30.85 324.75 -9.10 -39.95 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -7.12 Total: -0.29 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -0.91 Total: -4.30 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: -1.03 Total: -44.42 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.85 -9.10 -39.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259694869.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.209 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds