Wall clock time and date at job start Mon Mar 30 2020 01:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48553 * 111.00069 * 2 1 4 4 C 1.54388 * 104.59425 * 200.95888 * 3 2 1 5 5 C 1.54257 * 105.05870 * 23.85685 * 4 3 2 6 6 C 1.48564 * 110.99854 * 244.58062 * 2 1 3 7 7 H 1.09006 * 110.40947 * 40.14644 * 6 2 1 8 8 C 1.50694 * 110.41385 * 277.82085 * 6 2 1 9 9 O 1.21282 * 120.00250 * 341.45645 * 8 6 2 10 10 N 1.34781 * 120.00176 * 161.45253 * 8 6 2 11 11 C 1.46926 * 120.62904 * 359.72215 * 10 8 6 12 12 C 1.52759 * 109.00706 * 233.58539 * 11 10 8 13 13 C 1.53037 * 109.38314 * 305.58759 * 12 11 10 14 14 C 1.53042 * 109.54116 * 61.24266 * 13 12 11 15 15 H 1.08995 * 109.49990 * 58.58446 * 14 13 12 16 16 C 1.50702 * 109.52498 * 178.67196 * 14 13 12 17 17 H 1.07998 * 120.00011 * 119.85754 * 16 14 13 18 18 C 1.37869 * 119.99727 * 299.84657 * 16 14 13 19 19 N 1.31514 * 120.00284 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 120.00008 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47373 * 60.00185 * 20 18 16 22 22 H 1.48502 * 109.47286 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47380 * 300.00194 * 20 18 16 24 24 C 1.46922 * 120.62994 * 180.02562 * 10 8 6 25 25 H 1.09002 * 109.47401 * 175.41655 * 1 2 3 26 26 H 1.09001 * 109.46874 * 55.41668 * 1 2 3 27 27 H 1.09004 * 109.46970 * 295.41801 * 1 2 3 28 28 H 1.08994 * 110.41440 * 319.73898 * 3 2 1 29 29 H 1.09002 * 110.41251 * 82.18377 * 3 2 1 30 30 H 1.09000 * 110.32277 * 264.96038 * 4 3 2 31 31 H 1.09000 * 110.40795 * 142.79376 * 4 3 2 32 32 H 1.09000 * 110.32567 * 241.10153 * 5 4 3 33 33 H 1.08993 * 110.41227 * 118.93760 * 5 4 3 34 34 H 1.09001 * 109.58754 * 353.41594 * 11 10 8 35 35 H 1.08994 * 109.58561 * 113.84119 * 11 10 8 36 36 H 1.09004 * 109.56261 * 185.55387 * 12 11 10 37 37 H 1.09005 * 109.38972 * 65.51414 * 12 11 10 38 38 H 1.09006 * 109.45869 * 301.21888 * 13 12 11 39 39 H 1.09004 * 109.46276 * 181.26324 * 13 12 11 40 40 H 0.97002 * 120.00360 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.58486 * 246.15596 * 24 10 8 42 42 H 1.09001 * 109.59113 * 6.43301 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2500 -0.5344 5 6 3.4433 -0.0540 -1.3586 6 6 2.0014 -0.5953 -1.2527 7 1 1.4085 -0.2729 -2.1087 8 6 2.0103 -2.0993 -1.1575 9 8 1.9443 -2.6387 -0.0733 10 7 2.0916 -2.8449 -2.2773 11 6 2.1660 -2.2061 -3.5983 12 6 1.0657 -2.7782 -4.4903 13 6 1.1797 -4.3039 -4.5223 14 6 0.9961 -4.8607 -3.1086 15 1 0.0234 -4.5574 -2.7216 16 6 1.0761 -6.3652 -3.1456 17 1 1.8379 -6.8795 -2.5787 18 6 0.1764 -7.0849 -3.9028 19 7 -0.7512 -6.4585 -4.5933 20 14 0.2749 -8.9497 -3.9481 21 1 0.0998 -9.4882 -2.5752 22 1 -0.7962 -9.4808 -4.8289 23 1 1.5999 -9.3628 -4.4765 24 6 2.1008 -4.3121 -2.2006 25 1 -0.3634 -1.0244 -0.0821 26 1 -0.3633 0.5833 -0.8461 27 1 -0.3633 0.4411 0.9282 28 1 1.4099 2.0211 -0.6602 29 1 2.0079 1.7916 1.0121 30 1 4.1484 1.1746 0.2935 31 1 3.6955 2.0992 -1.1695 32 1 4.1483 -0.7694 -0.9353 33 1 3.6942 0.1537 -2.3987 34 1 2.0260 -1.1303 -3.4924 35 1 3.1384 -2.4077 -4.0474 36 1 1.1732 -2.3840 -5.5009 37 1 0.0919 -2.4945 -4.0909 38 1 2.1627 -4.5868 -4.8992 39 1 0.4091 -4.7121 -5.1763 40 1 -1.3840 -6.9648 -5.1264 41 1 3.0678 -4.6893 -2.5333 42 1 1.9206 -4.6255 -1.1723 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259694869.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:38 Heat of formation + Delta-G solvation = -53.386646 kcal Electronic energy + Delta-G solvation = -21398.660988 eV Core-core repulsion = 18377.360952 eV Total energy + Delta-G solvation = -3021.300036 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.48047 -39.40073 -38.05458 -35.38838 -33.32515 -32.92974 -32.17836 -30.25949 -27.06094 -26.71738 -26.08325 -23.49524 -23.05532 -21.86170 -21.13148 -19.75956 -18.64514 -18.11641 -17.14636 -16.78564 -16.58306 -15.78709 -15.54996 -15.26905 -15.11382 -14.73753 -14.67063 -14.54856 -14.02289 -13.83525 -13.61595 -13.30778 -12.97446 -12.84760 -12.71805 -12.60601 -12.58939 -12.33811 -12.06640 -11.90772 -11.85463 -11.60312 -11.52685 -11.25868 -10.86573 -10.62402 -10.43628 -9.48111 -9.43332 -8.11694 -6.27156 1.40690 1.42356 1.49717 1.65404 2.04094 2.42766 3.05817 3.14727 3.47642 3.62525 3.84697 3.95077 4.15635 4.23239 4.25516 4.36836 4.38469 4.44343 4.53410 4.56211 4.63308 4.72805 4.79371 4.85670 4.90511 4.92693 4.95973 5.02875 5.11199 5.14298 5.26408 5.27216 5.46065 5.55597 5.59742 5.77972 5.91699 6.00271 6.12799 6.33367 6.59665 6.82023 7.29102 7.41090 8.91881 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035172 B = 0.004686 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.897284 B = 5973.374562 C = 6121.555728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.524 5.524 3 C 0.032 3.968 4 C -0.115 4.115 5 C -0.109 4.109 6 C 0.048 3.952 7 H 0.092 0.908 8 C 0.510 3.490 9 O -0.581 6.581 10 N -0.608 5.608 11 C 0.110 3.890 12 C -0.128 4.128 13 C -0.105 4.105 14 C 0.043 3.957 15 H -0.018 1.018 16 C -0.540 4.540 17 H 0.051 0.949 18 C 0.018 3.982 19 N -0.913 5.913 20 Si 0.955 3.045 21 H -0.277 1.277 22 H -0.281 1.281 23 H -0.267 1.267 24 C 0.131 3.869 25 H 0.036 0.964 26 H 0.047 0.953 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.056 0.944 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.041 0.959 38 H 0.039 0.961 39 H 0.062 0.938 40 H 0.262 0.738 41 H 0.061 0.939 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.934 18.588 0.693 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.249 5.249 3 C -0.095 4.095 4 C -0.153 4.153 5 C -0.148 4.148 6 C -0.064 4.064 7 H 0.109 0.891 8 C 0.299 3.701 9 O -0.460 6.460 10 N -0.341 5.341 11 C -0.012 4.012 12 C -0.166 4.166 13 C -0.143 4.143 14 C 0.023 3.977 15 H 0.001 0.999 16 C -0.579 4.579 17 H 0.070 0.930 18 C -0.181 4.181 19 N -0.552 5.552 20 Si 0.780 3.220 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.192 1.192 24 C 0.009 3.991 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.075 0.925 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.907 17.978 1.621 19.328 hybrid contribution -0.882 -1.328 -0.541 1.684 sum 6.026 16.650 1.080 17.739 Atomic orbital electron populations 1.22467 0.87369 1.00788 1.02374 1.65001 1.08946 1.16956 1.33960 1.23262 0.95839 0.87926 1.02481 1.22310 0.96075 0.97000 0.99930 1.22295 0.91891 0.97680 1.02886 1.22715 1.00063 0.89725 0.93861 0.89069 1.21082 0.75426 0.90425 0.83205 1.90627 1.51447 1.74713 1.29260 1.48387 1.71693 1.06786 1.07212 1.21932 0.99895 0.97990 0.81375 1.21851 0.97995 0.96480 1.00298 1.21415 1.00366 0.93660 0.98875 1.18850 0.91810 0.94115 0.92883 0.99947 1.21411 1.15367 0.92517 1.28575 0.93045 1.25678 0.94695 1.02833 0.94884 1.70000 1.17984 1.36802 1.30430 0.85661 0.78080 0.80284 0.77926 1.20259 1.20653 1.19175 1.21507 0.99379 0.78607 0.99632 0.94542 0.93424 0.89658 0.91777 0.89172 0.90930 0.87868 0.92546 0.87449 0.87306 0.89630 0.88902 0.94033 0.94211 0.91944 0.92898 0.92036 0.93424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.44 127.69 1.21 1.68 16 2 N -0.52 -14.12 4.94 -887.01 -4.38 -18.50 16 3 C 0.03 0.56 6.49 86.45 0.56 1.12 16 4 C -0.12 -1.72 7.00 31.49 0.22 -1.50 16 5 C -0.11 -2.14 6.41 31.49 0.20 -1.94 16 6 C 0.05 1.27 1.70 44.31 0.08 1.35 16 7 H 0.09 2.05 6.35 -2.38 -0.02 2.04 16 8 C 0.51 19.29 6.57 87.65 0.58 19.87 16 9 O -0.58 -27.76 16.01 -3.04 -0.05 -27.81 16 10 N -0.61 -22.75 2.98 -819.82 -2.44 -25.19 16 11 C 0.11 3.07 6.27 86.22 0.54 3.61 16 12 C -0.13 -4.31 6.06 30.53 0.19 -4.12 16 13 C -0.10 -4.74 4.96 30.62 0.15 -4.59 16 14 C 0.04 2.20 2.25 -11.47 -0.03 2.18 16 15 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 16 C -0.54 -30.53 8.56 25.60 0.22 -30.31 16 17 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 18 C 0.02 1.02 5.30 84.65 0.45 1.47 16 19 N -0.91 -52.76 11.32 21.44 0.24 -52.51 16 20 Si 0.96 44.09 29.54 68.60 2.03 46.11 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 24 C 0.13 6.01 5.66 86.35 0.49 6.50 16 25 H 0.04 1.17 7.96 -2.39 -0.02 1.16 16 26 H 0.05 0.99 7.97 -2.39 -0.02 0.97 16 27 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.06 0.88 7.90 -2.39 -0.02 0.86 16 29 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 1.35 7.85 -2.39 -0.02 1.33 16 33 H 0.11 1.44 8.06 -2.39 -0.02 1.42 16 34 H 0.11 2.21 5.36 -2.39 -0.01 2.19 16 35 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.06 3.24 6.05 -2.39 -0.01 3.23 16 40 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 41 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.05 2.43 7.00 -2.39 -0.02 2.41 16 Total: -1.00 -72.15 324.75 1.22 -70.92 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.98 Total: 11.68 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 4.85 Total: -4.69 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -6.58 Total: -96.21 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.05 Total: -27.81 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -72.15 1.22 -70.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259694869.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.537 kcal (2) G-P(sol) polarization free energy of solvation -72.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds