Wall clock time and date at job start Mon Mar 30 2020 01:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47436 * 110.99898 * 2 1 4 4 C 1.54324 * 107.23089 * 123.25894 * 3 2 1 5 5 C 1.55140 * 103.01888 * 22.28261 * 4 3 2 6 6 C 1.47851 * 110.99786 * 120.84555 * 2 1 3 7 7 H 1.08997 * 110.37354 * 332.46432 * 6 2 1 8 8 C 1.50695 * 110.37341 * 94.80668 * 6 2 1 9 9 O 1.21279 * 120.00267 * 18.54635 * 8 6 2 10 10 N 1.34773 * 119.99949 * 198.54590 * 8 6 2 11 11 C 1.46926 * 120.63054 * 359.71703 * 10 8 6 12 12 C 1.53626 * 108.54221 * 126.37033 * 11 10 8 13 13 C 1.53044 * 109.24397 * 54.85670 * 12 11 10 14 14 C 1.53034 * 109.53878 * 298.51331 * 13 12 11 15 15 H 1.09005 * 109.49874 * 301.41347 * 14 13 12 16 16 C 1.50699 * 109.49818 * 181.31149 * 14 13 12 17 17 H 1.07999 * 120.00118 * 240.15987 * 16 14 13 18 18 C 1.37873 * 119.99692 * 60.16438 * 16 14 13 19 19 N 1.31520 * 120.00208 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 119.99928 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47123 * 59.99824 * 20 18 16 22 22 H 1.48499 * 109.47057 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47122 * 299.99677 * 20 18 16 24 24 C 1.46927 * 120.63203 * 180.02562 * 10 8 6 25 25 H 1.08996 * 109.46819 * 59.87381 * 1 2 3 26 26 H 1.09003 * 109.47171 * 179.87246 * 1 2 3 27 27 H 1.08997 * 109.46969 * 299.87235 * 1 2 3 28 28 H 1.08998 * 109.88931 * 242.66034 * 3 2 1 29 29 H 1.09003 * 109.89178 * 3.85625 * 3 2 1 30 30 H 1.08995 * 110.70829 * 140.66528 * 4 3 2 31 31 H 1.08998 * 110.70384 * 263.72400 * 4 3 2 32 32 H 1.08996 * 110.99132 * 82.43912 * 5 4 3 33 33 H 1.09002 * 110.98829 * 206.21612 * 5 4 3 34 34 H 1.08995 * 109.59054 * 246.20005 * 11 10 8 35 35 H 1.09002 * 109.58667 * 6.62979 * 11 10 8 36 36 H 1.08996 * 109.63486 * 294.86533 * 12 11 10 37 37 H 1.09002 * 109.43479 * 174.72618 * 12 11 10 38 38 H 1.08996 * 109.46105 * 178.48840 * 13 12 11 39 39 H 1.09005 * 109.44280 * 58.52747 * 13 12 11 40 40 H 0.96995 * 119.99917 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.58843 * 353.36420 * 24 10 8 42 42 H 1.08994 * 109.59195 * 113.79755 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9974 1.3764 0.0000 4 6 2.9159 1.5136 1.2325 5 6 3.3047 0.0443 1.5438 6 6 1.9989 -0.7077 1.1851 7 1 1.2890 -0.6503 2.0102 8 6 2.2974 -2.1457 0.8474 9 8 2.4209 -2.4836 -0.3108 10 7 2.4271 -3.0563 1.8325 11 6 2.2863 -2.6610 3.2406 12 6 1.2345 -3.5665 3.8994 13 6 1.6300 -5.0307 3.6945 14 6 1.6669 -5.3462 2.1975 15 1 0.6883 -5.1489 1.7598 16 6 2.0250 -6.7964 1.9977 17 1 2.9127 -7.0620 1.4429 18 6 1.2192 -7.7840 2.5233 19 7 0.1384 -7.4606 3.1993 20 14 1.6625 -9.5816 2.2751 21 1 2.9952 -9.8499 2.8730 22 1 0.6437 -10.4382 2.9335 23 1 1.7015 -9.8858 0.8221 24 6 2.7186 -4.4618 1.5191 25 1 -0.3633 0.5158 -0.8888 26 1 -0.3634 -1.0277 -0.0023 27 1 -0.3633 0.5118 0.8911 28 1 2.5697 1.5539 -0.9105 29 1 1.1755 2.0892 0.0689 30 1 3.8001 2.1032 0.9906 31 1 2.3753 1.9574 2.0685 32 1 4.1302 -0.2834 0.9119 33 1 3.5502 -0.0796 2.5986 34 1 3.2428 -2.7769 3.7501 35 1 1.9630 -1.6216 3.2978 36 1 0.2600 -3.3860 3.4458 37 1 1.1856 -3.3488 4.9663 38 1 0.9002 -5.6758 4.1837 39 1 2.6155 -5.2043 4.1267 40 1 -0.4283 -8.1554 3.5693 41 1 2.6805 -4.6111 0.4400 42 1 3.7096 -4.7213 1.8913 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259694871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:41 Heat of formation + Delta-G solvation = -32.439109 kcal Electronic energy + Delta-G solvation = -21377.615049 eV Core-core repulsion = 18357.223366 eV Total energy + Delta-G solvation = -3020.391683 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.12600 -38.19125 -36.43556 -33.48967 -32.16832 -31.28934 -30.51704 -29.10152 -25.76259 -25.09039 -24.57907 -21.99664 -21.63784 -21.13707 -19.46320 -18.21658 -17.22928 -16.28637 -15.95139 -15.28397 -14.89383 -14.72152 -14.18061 -13.87247 -13.51219 -13.38465 -13.12544 -12.96162 -12.69663 -12.59712 -12.15097 -12.02247 -11.88517 -11.55678 -11.32352 -11.25129 -10.94906 -10.87312 -10.82475 -10.73815 -10.29711 -9.94399 -9.75974 -9.42659 -9.19202 -8.82797 -8.37090 -8.23601 -7.82110 -6.00526 -4.07527 3.10201 3.32662 3.36824 3.38795 3.44318 4.10138 4.43528 4.45408 4.58432 4.78259 4.99862 5.05882 5.27442 5.29644 5.31975 5.39252 5.45015 5.56615 5.64216 5.64732 5.68675 5.76298 5.87192 5.95900 6.06502 6.11307 6.34216 6.41970 6.50358 6.68584 6.78332 6.87079 6.99547 7.04474 7.20214 7.35835 7.70287 7.94298 8.08584 8.09849 8.39891 8.80597 8.96406 9.57270 11.05008 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035430 B = 0.004661 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.105949 B = 6005.333995 C = 6160.842594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.512 5.512 3 C 0.044 3.956 4 C -0.140 4.140 5 C -0.116 4.116 6 C 0.053 3.947 7 H 0.076 0.924 8 C 0.517 3.483 9 O -0.528 6.528 10 N -0.606 5.606 11 C 0.109 3.891 12 C -0.135 4.135 13 C -0.112 4.112 14 C 0.041 3.959 15 H 0.028 0.972 16 C -0.514 4.514 17 H 0.056 0.944 18 C 0.064 3.936 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.119 3.881 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.025 0.975 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.035 0.965 40 H 0.261 0.739 41 H 0.078 0.922 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.805 17.220 1.390 17.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.236 5.236 3 C -0.084 4.084 4 C -0.179 4.179 5 C -0.154 4.154 6 C -0.059 4.059 7 H 0.093 0.907 8 C 0.303 3.697 9 O -0.403 6.403 10 N -0.340 5.340 11 C -0.015 4.015 12 C -0.173 4.173 13 C -0.150 4.150 14 C 0.022 3.978 15 H 0.047 0.953 16 C -0.553 4.553 17 H 0.075 0.925 18 C -0.138 4.138 19 N -0.529 5.529 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.002 4.002 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.044 0.956 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.861 16.690 0.387 16.938 hybrid contribution -0.227 -0.614 0.806 1.039 sum 2.634 16.077 1.193 16.334 Atomic orbital electron populations 1.22551 0.87089 1.02637 1.00290 1.63067 1.08029 1.13254 1.39290 1.22854 0.97899 0.89010 0.98618 1.22787 1.00156 0.96760 0.98184 1.22644 0.96519 0.94141 1.02112 1.22583 0.97645 0.93258 0.92370 0.90671 1.20152 0.77627 0.86456 0.85483 1.90650 1.49949 1.80372 1.19350 1.48305 1.69958 1.09918 1.05793 1.21850 0.99640 0.98044 0.81935 1.22084 0.97970 0.98620 0.98629 1.21622 1.00905 0.92061 1.00382 1.18969 0.94017 0.93189 0.91666 0.95345 1.21051 1.09588 0.90365 1.34252 0.92530 1.24931 0.94837 0.98987 0.95013 1.69865 1.14138 1.32918 1.35954 0.86641 0.78053 0.84742 0.78473 1.20267 1.21332 1.20210 1.21971 0.99272 0.77558 1.01423 0.91111 0.91086 0.95625 0.90281 0.92578 0.90377 0.91284 0.89989 0.90072 0.91932 0.91431 0.92472 0.92591 0.88696 0.94584 0.92955 0.90359 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.12 60.07 0.55 0.83 16 2 N -0.51 -7.28 4.69 -232.98 -1.09 -8.38 16 3 C 0.04 0.47 6.90 -2.84 -0.02 0.45 16 4 C -0.14 -1.27 6.94 -24.91 -0.17 -1.44 16 5 C -0.12 -1.32 6.35 -24.59 -0.16 -1.47 16 6 C 0.05 0.76 1.85 -67.34 -0.12 0.63 16 7 H 0.08 0.99 6.19 -51.93 -0.32 0.67 16 8 C 0.52 9.78 6.98 -10.99 -0.08 9.71 16 9 O -0.53 -12.15 16.00 5.56 0.09 -12.06 16 10 N -0.61 -11.44 2.97 -172.48 -0.51 -11.95 16 11 C 0.11 1.68 6.31 -3.48 -0.02 1.66 16 12 C -0.13 -2.39 6.10 -26.38 -0.16 -2.55 16 13 C -0.11 -2.50 4.96 -26.69 -0.13 -2.64 16 14 C 0.04 1.01 2.25 -91.63 -0.21 0.80 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 16 C -0.51 -14.03 8.56 -34.44 -0.29 -14.32 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 19 N -0.89 -25.07 11.32 55.43 0.63 -24.44 16 20 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.12 2.62 5.66 -3.68 -0.02 2.60 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.03 0.27 8.10 -51.93 -0.42 -0.15 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.50 7.58 -51.93 -0.39 0.11 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 1.04 8.05 -51.93 -0.42 0.62 16 33 H 0.08 0.78 7.91 -51.93 -0.41 0.37 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.85 5.23 -51.93 -0.27 0.58 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.09 2.41 6.05 -51.93 -0.31 2.10 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.08 1.88 7.01 -51.93 -0.36 1.51 16 42 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 324.86 15.07 4.90 4.90 Total: -1.00 -31.08 324.86 -9.05 -40.13 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -7.11 Total: -0.32 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -0.93 Total: -4.08 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -0.98 Total: -44.76 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.08 -9.05 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259694871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.695 kcal (2) G-P(sol) polarization free energy of solvation -31.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds