Wall clock time and date at job start Mon Mar 30 2020 01:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47436 * 110.99898 * 2 1 4 4 C 1.54324 * 107.23089 * 123.25894 * 3 2 1 5 5 C 1.55140 * 103.01888 * 22.28261 * 4 3 2 6 6 C 1.47851 * 110.99786 * 120.84555 * 2 1 3 7 7 H 1.08997 * 110.37354 * 332.46432 * 6 2 1 8 8 C 1.50695 * 110.37341 * 94.80668 * 6 2 1 9 9 O 1.21279 * 120.00267 * 18.54635 * 8 6 2 10 10 N 1.34773 * 119.99949 * 198.54590 * 8 6 2 11 11 C 1.46926 * 120.63054 * 359.71703 * 10 8 6 12 12 C 1.53626 * 108.54221 * 126.37033 * 11 10 8 13 13 C 1.53044 * 109.24397 * 54.85670 * 12 11 10 14 14 C 1.53034 * 109.53878 * 298.51331 * 13 12 11 15 15 H 1.09005 * 109.49874 * 301.41347 * 14 13 12 16 16 C 1.50699 * 109.49818 * 181.31149 * 14 13 12 17 17 H 1.07999 * 120.00118 * 240.15987 * 16 14 13 18 18 C 1.37873 * 119.99692 * 60.16438 * 16 14 13 19 19 N 1.31520 * 120.00208 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 119.99928 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47123 * 59.99824 * 20 18 16 22 22 H 1.48499 * 109.47057 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47122 * 299.99677 * 20 18 16 24 24 C 1.46927 * 120.63203 * 180.02562 * 10 8 6 25 25 H 1.08996 * 109.46819 * 59.87381 * 1 2 3 26 26 H 1.09003 * 109.47171 * 179.87246 * 1 2 3 27 27 H 1.08997 * 109.46969 * 299.87235 * 1 2 3 28 28 H 1.08998 * 109.88931 * 242.66034 * 3 2 1 29 29 H 1.09003 * 109.89178 * 3.85625 * 3 2 1 30 30 H 1.08995 * 110.70829 * 140.66528 * 4 3 2 31 31 H 1.08998 * 110.70384 * 263.72400 * 4 3 2 32 32 H 1.08996 * 110.99132 * 82.43912 * 5 4 3 33 33 H 1.09002 * 110.98829 * 206.21612 * 5 4 3 34 34 H 1.08995 * 109.59054 * 246.20005 * 11 10 8 35 35 H 1.09002 * 109.58667 * 6.62979 * 11 10 8 36 36 H 1.08996 * 109.63486 * 294.86533 * 12 11 10 37 37 H 1.09002 * 109.43479 * 174.72618 * 12 11 10 38 38 H 1.08996 * 109.46105 * 178.48840 * 13 12 11 39 39 H 1.09005 * 109.44280 * 58.52747 * 13 12 11 40 40 H 0.96995 * 119.99917 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.58843 * 353.36420 * 24 10 8 42 42 H 1.08994 * 109.59195 * 113.79755 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9974 1.3764 0.0000 4 6 2.9159 1.5136 1.2325 5 6 3.3047 0.0443 1.5438 6 6 1.9989 -0.7077 1.1851 7 1 1.2890 -0.6503 2.0102 8 6 2.2974 -2.1457 0.8474 9 8 2.4209 -2.4836 -0.3108 10 7 2.4271 -3.0563 1.8325 11 6 2.2863 -2.6610 3.2406 12 6 1.2345 -3.5665 3.8994 13 6 1.6300 -5.0307 3.6945 14 6 1.6669 -5.3462 2.1975 15 1 0.6883 -5.1489 1.7598 16 6 2.0250 -6.7964 1.9977 17 1 2.9127 -7.0620 1.4429 18 6 1.2192 -7.7840 2.5233 19 7 0.1384 -7.4606 3.1993 20 14 1.6625 -9.5816 2.2751 21 1 2.9952 -9.8499 2.8730 22 1 0.6437 -10.4382 2.9335 23 1 1.7015 -9.8858 0.8221 24 6 2.7186 -4.4618 1.5191 25 1 -0.3633 0.5158 -0.8888 26 1 -0.3634 -1.0277 -0.0023 27 1 -0.3633 0.5118 0.8911 28 1 2.5697 1.5539 -0.9105 29 1 1.1755 2.0892 0.0689 30 1 3.8001 2.1032 0.9906 31 1 2.3753 1.9574 2.0685 32 1 4.1302 -0.2834 0.9119 33 1 3.5502 -0.0796 2.5986 34 1 3.2428 -2.7769 3.7501 35 1 1.9630 -1.6216 3.2978 36 1 0.2600 -3.3860 3.4458 37 1 1.1856 -3.3488 4.9663 38 1 0.9002 -5.6758 4.1837 39 1 2.6155 -5.2043 4.1267 40 1 -0.4283 -8.1554 3.5693 41 1 2.6805 -4.6111 0.4400 42 1 3.7096 -4.7213 1.8913 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259694871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:41 Heat of formation + Delta-G solvation = -53.101132 kcal Electronic energy + Delta-G solvation = -21378.511022 eV Core-core repulsion = 18357.223366 eV Total energy + Delta-G solvation = -3021.287655 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.44118 -39.42902 -38.04102 -35.37184 -33.25529 -32.85540 -32.12909 -30.30405 -27.04899 -26.71965 -26.06329 -23.47958 -23.04925 -21.99433 -21.06301 -19.67022 -18.68316 -18.15162 -17.12381 -16.64288 -16.47360 -16.15406 -15.62183 -15.09893 -15.01230 -14.69059 -14.58849 -14.28390 -14.12135 -13.80131 -13.60605 -13.50375 -13.08524 -12.85317 -12.73230 -12.60009 -12.46250 -12.30197 -12.08358 -11.91364 -11.83687 -11.63251 -11.58657 -11.25659 -10.85795 -10.61327 -10.42815 -9.45446 -9.24006 -8.11078 -6.26549 1.40925 1.42682 1.50026 1.68360 2.05825 2.43178 3.04935 3.15239 3.48990 3.66657 3.86276 3.94277 4.14623 4.19546 4.24374 4.37380 4.41313 4.44368 4.53180 4.57435 4.62531 4.77989 4.80101 4.86979 4.90301 4.94637 4.96459 4.97831 5.09640 5.12254 5.27827 5.32102 5.47560 5.57493 5.60427 5.88887 5.92687 6.10140 6.13878 6.34195 6.63006 6.82758 7.33121 7.41664 8.92442 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035430 B = 0.004661 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.105949 B = 6005.333995 C = 6160.842594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.041 3.959 4 C -0.128 4.128 5 C -0.114 4.114 6 C 0.059 3.941 7 H 0.095 0.905 8 C 0.509 3.491 9 O -0.581 6.581 10 N -0.609 5.609 11 C 0.110 3.890 12 C -0.128 4.128 13 C -0.105 4.105 14 C 0.042 3.958 15 H -0.018 1.018 16 C -0.540 4.540 17 H 0.051 0.949 18 C 0.018 3.982 19 N -0.913 5.913 20 Si 0.955 3.045 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.277 1.277 24 C 0.132 3.868 25 H 0.082 0.918 26 H 0.039 0.961 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.041 0.959 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.039 0.961 40 H 0.262 0.738 41 H 0.047 0.953 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.591 19.567 3.196 20.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.273 5.273 3 C -0.086 4.086 4 C -0.166 4.166 5 C -0.152 4.152 6 C -0.052 4.052 7 H 0.112 0.888 8 C 0.297 3.703 9 O -0.461 6.461 10 N -0.342 5.342 11 C -0.012 4.012 12 C -0.166 4.166 13 C -0.143 4.143 14 C 0.023 3.977 15 H 0.000 1.000 16 C -0.579 4.579 17 H 0.070 0.930 18 C -0.181 4.181 19 N -0.552 5.552 20 Si 0.781 3.219 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.203 1.203 24 C 0.009 3.991 25 H 0.100 0.900 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.126 0.874 34 H 0.104 0.896 35 H 0.127 0.873 36 H 0.060 0.940 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.649 19.069 2.221 19.542 hybrid contribution -0.507 -1.363 0.177 1.465 sum 3.142 17.706 2.398 18.142 Atomic orbital electron populations 1.22513 0.86593 1.01114 1.02059 1.62920 1.08856 1.15596 1.39900 1.22930 0.98881 0.87334 0.99434 1.22781 1.00643 0.95247 0.97940 1.22706 0.94088 0.95178 1.03240 1.22563 0.99802 0.89903 0.92942 0.88777 1.21198 0.76062 0.88446 0.84589 1.90615 1.52224 1.81607 1.21622 1.48388 1.69651 1.08414 1.07724 1.22115 1.00123 0.99543 0.79419 1.21995 0.97877 0.95605 1.01089 1.21413 1.00120 0.95064 0.97707 1.18868 0.92282 0.92916 0.93608 0.99967 1.21418 1.09753 0.92155 1.34540 0.93048 1.25684 0.94723 1.03043 0.94660 1.70004 1.14791 1.34068 1.36368 0.85659 0.78262 0.79780 0.78242 1.19169 1.20660 1.20266 1.21515 0.98663 0.79761 0.99172 0.89963 0.94231 0.93194 0.90976 0.90497 0.88642 0.88954 0.91997 0.87434 0.89602 0.87278 0.93993 0.89024 0.91979 0.94223 0.92911 0.93475 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 9.12 127.69 1.16 1.77 16 2 N -0.55 -14.79 4.69 -891.00 -4.18 -18.97 16 3 C 0.04 0.75 6.90 86.65 0.60 1.35 16 4 C -0.13 -1.75 6.94 31.78 0.22 -1.52 16 5 C -0.11 -2.19 6.35 31.98 0.20 -1.99 16 6 C 0.06 1.57 1.85 44.64 0.08 1.66 16 7 H 0.09 2.12 6.19 -2.39 -0.01 2.11 16 8 C 0.51 19.31 6.98 87.66 0.61 19.93 16 9 O -0.58 -27.98 16.00 -3.03 -0.05 -28.03 16 10 N -0.61 -22.81 2.97 -817.99 -2.43 -25.24 16 11 C 0.11 3.06 6.31 86.51 0.55 3.61 16 12 C -0.13 -4.30 6.10 30.82 0.19 -4.11 16 13 C -0.10 -4.75 4.96 30.62 0.15 -4.60 16 14 C 0.04 2.20 2.25 -11.45 -0.03 2.18 16 15 H -0.02 -1.07 8.14 -2.38 -0.02 -1.09 16 16 C -0.54 -30.60 8.56 25.60 0.22 -30.38 16 17 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 18 C 0.02 1.01 5.30 84.65 0.45 1.46 16 19 N -0.91 -52.88 11.32 21.45 0.24 -52.64 16 20 Si 0.96 44.17 29.54 68.60 2.03 46.19 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 24 C 0.13 6.03 5.66 86.38 0.49 6.52 16 25 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 26 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 1.09 7.58 -2.39 -0.02 1.07 16 30 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 1.46 8.05 -2.39 -0.02 1.44 16 33 H 0.11 1.51 7.91 -2.39 -0.02 1.49 16 34 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.11 2.20 5.23 -2.39 -0.01 2.19 16 36 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.06 3.23 6.05 -2.39 -0.01 3.22 16 39 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 40 H 0.26 14.42 8.31 -92.71 -0.77 13.64 16 41 H 0.05 2.41 7.01 -2.39 -0.02 2.40 16 42 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -72.70 324.86 1.49 -71.21 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.98 Total: 11.61 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 4.90 Total: -4.14 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -6.36 Total: -96.85 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.05 Total: -28.03 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -72.70 1.49 -71.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259694871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.104 kcal (2) G-P(sol) polarization free energy of solvation -72.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds