Wall clock time and date at job start Mon Mar 30 2020 01:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47908 * 110.99980 * 2 1 4 4 C 1.53993 * 107.05700 * 145.84080 * 3 2 1 5 5 C 1.54595 * 105.14156 * 358.77979 * 4 3 2 6 6 H 1.09002 * 110.72361 * 96.39803 * 5 4 3 7 7 C 1.50695 * 110.72434 * 219.50415 * 5 4 3 8 8 O 1.21284 * 120.00229 * 357.55012 * 7 5 4 9 9 N 1.34775 * 120.00229 * 177.54656 * 7 5 4 10 10 C 1.46924 * 120.62895 * 359.72570 * 9 7 5 11 11 C 1.53625 * 108.54697 * 126.36774 * 10 9 7 12 12 C 1.53035 * 109.24137 * 54.85244 * 11 10 9 13 13 C 1.50697 * 109.44756 * 178.49830 * 12 11 10 14 14 H 1.08002 * 120.00291 * 120.06429 * 13 12 11 15 15 C 1.37877 * 120.00400 * 300.06443 * 13 12 11 16 16 N 1.31513 * 119.99620 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00281 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46912 * 60.00181 * 17 15 13 19 19 H 1.48505 * 109.46872 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47138 * 299.99845 * 17 15 13 21 21 C 1.53042 * 109.54062 * 298.51304 * 12 11 10 22 22 C 1.46931 * 120.63462 * 179.97438 * 9 7 5 23 23 C 1.48534 * 111.00286 * 117.39507 * 2 1 3 24 24 H 1.08999 * 109.47214 * 59.87355 * 1 2 3 25 25 H 1.09004 * 109.46687 * 179.86980 * 1 2 3 26 26 H 1.08993 * 109.47205 * 299.87247 * 1 2 3 27 27 H 1.09000 * 109.91335 * 26.49151 * 3 2 1 28 28 H 1.08994 * 110.08433 * 265.28753 * 3 2 1 29 29 H 1.08997 * 110.31194 * 239.86204 * 4 3 2 30 30 H 1.09000 * 110.30739 * 117.69487 * 4 3 2 31 31 H 1.09006 * 109.58343 * 246.20158 * 10 9 7 32 32 H 1.08998 * 109.58659 * 6.61983 * 10 9 7 33 33 H 1.08997 * 109.62946 * 294.86137 * 11 10 9 34 34 H 1.08997 * 109.45675 * 174.73754 * 11 10 9 35 35 H 1.09004 * 109.46397 * 58.53566 * 12 11 10 36 36 H 0.97006 * 119.99788 * 179.97438 * 16 15 13 37 37 H 1.08992 * 109.49580 * 301.41442 * 21 12 11 38 38 H 1.08998 * 109.52360 * 181.33268 * 21 12 11 39 39 H 1.09002 * 109.58054 * 353.37516 * 22 9 7 40 40 H 1.08999 * 109.58569 * 113.65913 * 22 9 7 41 41 H 1.09000 * 110.66603 * 81.84380 * 23 2 1 42 42 H 1.09003 * 110.66913 * 318.72032 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2982 1.3660 0.8266 5 6 3.4492 -0.0929 1.3154 6 1 4.1116 -0.6539 0.6562 7 6 3.9553 -0.1302 2.7343 8 8 4.2250 0.9030 3.3094 9 7 4.1081 -1.3118 3.3645 10 6 3.7798 -2.5714 2.6832 11 6 4.9991 -3.5025 2.7634 12 6 5.4109 -3.6692 4.2279 13 6 6.5839 -4.6112 4.3151 14 1 7.5173 -4.2734 4.7407 15 6 6.4657 -5.9044 3.8517 16 7 5.3290 -6.3159 3.3339 17 14 7.9200 -7.0718 3.9592 18 1 8.3196 -7.2351 5.3801 19 1 7.5371 -8.3924 3.3982 20 1 9.0591 -6.5161 3.1853 21 6 5.8054 -2.3086 4.8067 22 6 4.6011 -1.3644 4.7476 23 6 2.0013 -0.6380 1.2311 24 1 -0.3633 0.5158 -0.8888 25 1 -0.3633 -1.0277 -0.0023 26 1 -0.3633 0.5118 0.8911 27 1 1.2758 2.0561 0.4571 28 1 2.2117 1.7001 -1.0202 29 1 3.2135 2.0429 1.6767 30 1 4.1469 1.6456 0.2025 31 1 2.9260 -3.0398 3.1728 32 1 3.5398 -2.3704 1.6391 33 1 5.8265 -3.0718 2.1996 34 1 4.7411 -4.4754 2.3450 35 1 4.5747 -4.0769 4.7961 36 1 5.2459 -7.2256 3.0074 37 1 6.6252 -1.8891 4.2237 38 1 6.1212 -2.4312 5.8427 39 1 4.9032 -0.3666 5.0659 40 1 3.8123 -1.7338 5.4028 41 1 2.0041 -1.7235 1.1315 42 1 1.4237 -0.3323 2.1035 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260004787.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:03 Heat of formation + Delta-G solvation = -54.479031 kcal Electronic energy + Delta-G solvation = -21212.658737 eV Core-core repulsion = 18191.311331 eV Total energy + Delta-G solvation = -3021.347406 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.56947 -39.40623 -38.27873 -35.35950 -33.65638 -32.77922 -31.71451 -30.00133 -28.07224 -26.76928 -24.97234 -23.99795 -22.90808 -22.01894 -21.04217 -19.71914 -18.69571 -18.08835 -17.12023 -17.01063 -16.48682 -16.05176 -15.73015 -15.08372 -14.91219 -14.77713 -14.67633 -14.48438 -14.01896 -13.94337 -13.79637 -13.29738 -13.06885 -12.80042 -12.53960 -12.46647 -12.41268 -12.36014 -12.23738 -12.10383 -11.91826 -11.66287 -11.46634 -11.00911 -10.97440 -10.68669 -10.38326 -9.57247 -9.45966 -8.07052 -6.20164 1.43510 1.44274 1.51427 1.55904 2.03597 2.44992 3.00764 3.19664 3.46059 3.57843 3.73084 4.03159 4.18477 4.24230 4.25669 4.36421 4.39497 4.48602 4.51819 4.53429 4.57052 4.61836 4.75438 4.82605 4.85920 4.95811 4.97307 5.02660 5.07933 5.17952 5.19095 5.25550 5.43408 5.55010 5.65497 5.79657 5.99342 6.00954 6.14107 6.39970 6.48726 6.88785 7.12977 7.47532 8.96191 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029018 B = 0.004691 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.679796 B = 5966.992800 C = 6522.487081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.529 5.529 3 C 0.039 3.961 4 C -0.115 4.115 5 C -0.111 4.111 6 H 0.115 0.885 7 C 0.518 3.482 8 O -0.586 6.586 9 N -0.600 5.600 10 C 0.112 3.888 11 C -0.116 4.116 12 C 0.046 3.954 13 C -0.538 4.538 14 H 0.046 0.954 15 C 0.020 3.980 16 N -0.910 5.910 17 Si 0.947 3.053 18 H -0.275 1.275 19 H -0.282 1.282 20 H -0.275 1.275 21 C -0.113 4.113 22 C 0.116 3.884 23 C 0.049 3.951 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.028 0.972 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.028 0.972 34 H 0.081 0.919 35 H 0.004 0.996 36 H 0.262 0.738 37 H 0.041 0.959 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.108 10.977 -6.786 15.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.253 5.253 3 C -0.089 4.089 4 C -0.153 4.153 5 C -0.133 4.133 6 H 0.133 0.867 7 C 0.307 3.693 8 O -0.467 6.467 9 N -0.331 5.331 10 C -0.010 4.010 11 C -0.154 4.154 12 C 0.027 3.973 13 C -0.576 4.576 14 H 0.064 0.936 15 C -0.179 4.179 16 N -0.550 5.550 17 Si 0.773 3.227 18 H -0.201 1.201 19 H -0.208 1.208 20 H -0.201 1.201 21 C -0.151 4.151 22 C -0.006 4.006 23 C -0.079 4.079 24 H 0.102 0.898 25 H 0.095 0.905 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.114 0.886 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.046 0.954 34 H 0.099 0.901 35 H 0.022 0.978 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.118 0.882 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.913 11.055 -7.031 15.846 hybrid contribution 0.716 -0.561 1.049 1.388 sum -8.197 10.495 -5.982 14.598 Atomic orbital electron populations 1.22596 0.86383 1.03032 1.01446 1.64803 1.09568 1.15428 1.35519 1.22933 0.95057 0.89632 1.01237 1.22330 0.98914 0.94126 0.99951 1.22191 0.98691 1.00162 0.92214 0.86687 1.20873 0.76998 0.82508 0.88951 1.90605 1.53648 1.33743 1.68750 1.48268 1.63557 1.06645 1.14650 1.22160 0.98058 0.82954 0.97850 1.21878 0.95167 0.99106 0.99282 1.18606 0.94973 0.90894 0.92825 1.21517 0.98811 0.97018 1.40214 0.93575 1.25600 0.98006 0.99386 0.94898 1.69931 1.25664 1.17871 1.41511 0.85787 0.80216 0.78331 0.78336 1.20055 1.20758 1.20086 1.21839 0.96380 0.96279 1.00621 1.21586 0.96549 1.00212 0.82297 1.23312 0.91899 1.00846 0.91876 0.89790 0.90548 0.95297 0.93027 0.88601 0.91238 0.89668 0.91288 0.88062 0.95352 0.90096 0.97758 0.92870 0.94064 0.91834 0.90268 0.91117 0.88179 0.93829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.40 127.69 1.20 1.42 16 2 N -0.53 -10.89 5.55 -909.16 -5.05 -15.94 16 3 C 0.04 0.74 6.70 86.44 0.58 1.32 16 4 C -0.11 -2.66 6.31 31.47 0.20 -2.46 16 5 C -0.11 -2.89 2.46 -10.34 -0.03 -2.92 16 6 H 0.12 2.91 7.69 -2.39 -0.02 2.89 16 7 C 0.52 17.30 7.09 87.66 0.62 17.92 16 8 O -0.59 -22.92 14.87 -3.04 -0.05 -22.97 16 9 N -0.60 -20.68 2.97 -818.14 -2.43 -23.11 16 10 C 0.11 3.75 5.57 86.51 0.48 4.24 16 11 C -0.12 -5.03 5.17 30.82 0.16 -4.87 16 12 C 0.05 2.17 2.06 -11.52 -0.02 2.15 16 13 C -0.54 -28.83 8.56 25.60 0.22 -28.62 16 14 H 0.05 2.48 7.74 -2.91 -0.02 2.45 16 15 C 0.02 1.08 5.30 84.65 0.45 1.53 16 16 N -0.91 -49.70 11.31 21.45 0.24 -49.46 16 17 Si 0.95 42.52 29.54 68.60 2.03 44.54 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 C -0.11 -4.63 5.30 30.66 0.16 -4.47 16 22 C 0.12 4.17 6.43 86.35 0.55 4.72 16 23 C 0.05 1.12 5.18 86.65 0.45 1.57 16 24 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.03 0.47 8.00 -2.39 -0.02 0.45 16 27 H 0.05 0.92 7.73 -2.39 -0.02 0.90 16 28 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.86 6.89 -2.39 -0.02 1.85 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 32 H 0.10 2.86 4.41 -2.39 -0.01 2.85 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 3.94 6.03 -2.39 -0.01 3.92 16 35 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 36 H 0.26 13.69 8.31 -92.70 -0.77 12.92 16 37 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.08 2.85 7.01 -2.39 -0.02 2.83 16 40 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.10 2.22 6.22 -2.39 -0.01 2.20 16 42 H 0.04 1.05 7.87 -2.39 -0.02 1.04 16 Total: -1.00 -60.62 320.41 0.76 -59.86 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.99 Total: 15.52 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 5.03 Total: -8.46 kcal Atomic # 7 Polarization: -81.27 SS G_CDS: -7.23 Total: -88.50 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.05 Total: -22.97 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -60.62 0.76 -59.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004787.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.379 kcal (2) G-P(sol) polarization free energy of solvation -60.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds