Wall clock time and date at job start Mon Mar 30 2020 01:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.48554 * 110.99921 * 2 1 4 4 C 1.54386 * 104.59273 * 200.96093 * 3 2 1 5 5 C 1.54264 * 105.05869 * 23.85322 * 4 3 2 6 6 H 1.08997 * 110.32104 * 241.00041 * 5 4 3 7 7 C 1.50695 * 110.32009 * 118.89718 * 5 4 3 8 8 O 1.21274 * 120.00413 * 0.27043 * 7 5 4 9 9 N 1.34784 * 119.99635 * 180.02562 * 7 5 4 10 10 C 1.46918 * 120.63039 * 359.71713 * 9 7 5 11 11 C 1.52761 * 109.01190 * 233.58189 * 10 9 7 12 12 C 1.53040 * 109.38299 * 305.59408 * 11 10 9 13 13 C 1.50695 * 109.45717 * 181.25632 * 12 11 10 14 14 H 1.08002 * 120.00175 * 239.92973 * 13 12 11 15 15 C 1.37878 * 120.00507 * 59.93405 * 13 12 11 16 16 N 1.31515 * 119.99393 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00458 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.46977 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47129 * 119.99746 * 17 15 13 20 20 H 1.48497 * 109.46741 * 239.99805 * 17 15 13 21 21 C 1.53036 * 109.53902 * 61.23432 * 12 11 10 22 22 C 1.46931 * 120.62757 * 179.97438 * 9 7 5 23 23 C 1.48559 * 110.99663 * 244.58048 * 2 1 3 24 24 H 1.08993 * 109.47055 * 59.87045 * 1 2 3 25 25 H 1.09003 * 109.47304 * 179.87885 * 1 2 3 26 26 H 1.09003 * 109.46826 * 299.87328 * 1 2 3 27 27 H 1.09004 * 110.41197 * 82.18825 * 3 2 1 28 28 H 1.08997 * 110.41337 * 319.74326 * 3 2 1 29 29 H 1.08998 * 110.32303 * 264.95861 * 4 3 2 30 30 H 1.08998 * 110.32178 * 142.74891 * 4 3 2 31 31 H 1.08998 * 109.59258 * 353.42356 * 10 9 7 32 32 H 1.09001 * 109.58913 * 113.84319 * 10 9 7 33 33 H 1.08997 * 109.56476 * 185.55091 * 11 10 9 34 34 H 1.09006 * 109.35273 * 65.50044 * 11 10 9 35 35 H 1.08996 * 109.45822 * 301.21147 * 12 11 10 36 36 H 0.97008 * 119.99976 * 180.02562 * 16 15 13 37 37 H 1.09002 * 109.49840 * 178.68334 * 21 12 11 38 38 H 1.08997 * 109.52697 * 58.60592 * 21 12 11 39 39 H 1.09000 * 109.58531 * 246.15235 * 22 9 7 40 40 H 1.08997 * 109.58373 * 6.58294 * 22 9 7 41 41 H 1.09000 * 110.41190 * 40.26502 * 23 2 1 42 42 H 1.08999 * 110.41130 * 277.81959 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2500 -0.5345 5 6 3.4433 -0.0540 -1.3586 6 1 4.1496 -0.7687 -0.9363 7 6 3.7894 0.2355 -2.7964 8 8 4.0230 1.3728 -3.1467 9 7 3.8443 -0.7703 -3.6919 10 6 3.5753 -2.1547 -3.2802 11 6 4.7459 -3.0377 -3.7087 12 6 4.9904 -2.8641 -5.2094 13 6 6.1249 -3.7577 -5.6399 14 1 7.0132 -3.3287 -6.0796 15 6 6.0289 -5.1229 -5.4725 16 7 4.9474 -5.6452 -4.9367 17 14 7.4350 -6.2306 -6.0068 18 1 8.5283 -5.4027 -6.5764 19 1 7.9444 -6.9847 -4.8334 20 1 6.9497 -7.1849 -7.0359 21 6 5.3497 -1.4060 -5.5041 22 6 4.1799 -0.5037 -5.0973 23 6 2.0014 -0.5953 -1.2527 24 1 -0.3633 0.5158 -0.8888 25 1 -0.3634 -1.0277 -0.0022 26 1 -0.3633 0.5119 0.8912 27 1 2.0080 1.7916 1.0121 28 1 1.4099 2.0212 -0.6601 29 1 4.1484 1.1747 0.2934 30 1 3.6937 2.0995 -1.1700 31 1 3.4636 -2.1987 -2.1969 32 1 2.6613 -2.5071 -3.7583 33 1 4.5129 -4.0811 -3.4963 34 1 5.6399 -2.7447 -3.1581 35 1 4.0879 -3.1337 -5.7579 36 1 4.8800 -6.6057 -4.8186 37 1 5.5465 -1.2880 -6.5697 38 1 6.2381 -1.1280 -4.9372 39 1 3.3162 -0.7190 -5.7264 40 1 4.4672 0.5414 -5.2125 41 1 1.4098 -0.2712 -2.1089 42 1 2.0078 -1.6831 -1.1838 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260004791.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:06 Heat of formation + Delta-G solvation = -37.396353 kcal Electronic energy + Delta-G solvation = -21241.357539 eV Core-core repulsion = 18220.750894 eV Total energy + Delta-G solvation = -3020.606645 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.31793 -38.22274 -36.75531 -33.58074 -32.46325 -31.23359 -30.18030 -28.89493 -26.43169 -25.74584 -23.37160 -22.41537 -21.50115 -21.19836 -19.49255 -18.26237 -17.28244 -16.27489 -16.04153 -15.58328 -14.95555 -14.59310 -14.56201 -14.17047 -13.64900 -13.26484 -13.11874 -12.94755 -12.69984 -12.58327 -12.32042 -11.81313 -11.68802 -11.58237 -11.26369 -11.21409 -11.13723 -10.96960 -10.73818 -10.61687 -10.40347 -10.12104 -9.68879 -9.42840 -9.19743 -8.94519 -8.65945 -8.40870 -8.03651 -6.05878 -4.11849 2.91739 3.25732 3.34438 3.38248 3.39590 3.96104 4.39071 4.54079 4.58736 4.83084 5.10951 5.18127 5.23062 5.26246 5.30673 5.46047 5.52520 5.59345 5.69823 5.78237 5.82058 5.88299 5.91709 6.04559 6.07678 6.11630 6.13561 6.29594 6.42943 6.62818 6.65522 6.82029 6.87085 7.00929 7.11738 7.24770 7.63868 7.88679 7.89986 8.01178 8.37544 8.51870 8.91803 9.53586 10.99743 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.030683 B = 0.004646 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.325364 B = 6025.306163 C = 6521.140364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.515 5.515 3 C 0.032 3.968 4 C -0.116 4.116 5 C -0.113 4.113 6 H 0.106 0.894 7 C 0.516 3.484 8 O -0.558 6.558 9 N -0.597 5.597 10 C 0.100 3.900 11 C -0.125 4.125 12 C 0.048 3.952 13 C -0.511 4.511 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.890 3.110 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.123 4.123 22 C 0.111 3.889 23 C 0.043 3.957 24 H 0.028 0.972 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.039 0.961 35 H 0.027 0.973 36 H 0.260 0.740 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.048 0.952 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.437 9.091 8.497 14.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.239 5.239 3 C -0.096 4.096 4 C -0.154 4.154 5 C -0.135 4.135 6 H 0.125 0.875 7 C 0.304 3.696 8 O -0.438 6.438 9 N -0.328 5.328 10 C -0.022 4.022 11 C -0.164 4.164 12 C 0.030 3.970 13 C -0.550 4.550 14 H 0.073 0.927 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.161 4.161 22 C -0.011 4.011 23 C -0.085 4.085 24 H 0.047 0.953 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.244 9.191 8.819 14.653 hybrid contribution 0.421 -0.461 -0.998 1.177 sum -6.823 8.729 7.821 13.562 Atomic orbital electron populations 1.22514 0.87959 1.02365 1.00769 1.65424 1.08245 1.15579 1.34665 1.23156 0.95483 0.89963 1.00995 1.22331 0.96302 0.97542 0.99265 1.21992 0.98437 0.99823 0.93210 0.87549 1.20389 0.76973 0.84764 0.87498 1.90599 1.51444 1.21530 1.80209 1.48220 1.67311 1.07839 1.09447 1.22078 1.00554 0.80409 0.99144 1.21958 0.94223 1.00819 0.99374 1.18637 0.97076 0.89253 0.92065 1.21245 1.02510 0.91287 1.39923 0.92653 1.24955 0.95734 0.98130 0.95114 1.69843 1.27005 1.11737 1.44523 0.86561 0.82571 0.80682 0.78355 1.19836 1.21030 1.21047 1.22011 0.96118 0.97840 1.00149 1.21717 0.98507 1.00434 0.80467 1.23198 0.93222 1.00754 0.91299 0.95337 0.91042 0.91268 0.90006 0.93762 0.90656 0.88804 0.91036 0.91980 0.87649 0.94241 0.95474 0.93017 0.92155 0.92949 0.92256 0.90396 0.93325 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.53 60.07 0.57 0.70 16 2 N -0.52 -6.05 5.66 -238.23 -1.35 -7.40 16 3 C 0.03 0.36 6.49 -2.18 -0.01 0.34 16 4 C -0.12 -1.46 6.59 -25.34 -0.17 -1.63 16 5 C -0.11 -1.57 2.51 -90.39 -0.23 -1.80 16 6 H 0.11 1.44 7.60 -51.93 -0.39 1.04 16 7 C 0.52 8.90 6.94 -10.98 -0.08 8.83 16 8 O -0.56 -11.06 14.66 5.56 0.08 -10.98 16 9 N -0.60 -10.56 2.98 -173.01 -0.52 -11.08 16 10 C 0.10 1.74 5.67 -3.94 -0.02 1.72 16 11 C -0.13 -2.70 5.14 -26.83 -0.14 -2.84 16 12 C 0.05 1.13 2.07 -91.73 -0.19 0.94 16 13 C -0.51 -13.51 8.56 -34.44 -0.29 -13.80 16 14 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 16 N -0.89 -24.16 11.30 55.43 0.63 -23.53 16 17 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C -0.12 -2.51 5.30 -26.59 -0.14 -2.65 16 22 C 0.11 2.02 6.44 -3.69 -0.02 2.00 16 23 C 0.04 0.55 4.92 -2.18 -0.01 0.54 16 24 H 0.03 0.27 7.97 -51.93 -0.41 -0.14 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.50 7.97 -51.93 -0.41 0.09 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.09 1.33 6.46 -51.93 -0.34 1.00 16 31 H 0.07 1.07 4.45 -51.93 -0.23 0.84 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.11 2.53 6.03 -51.93 -0.31 2.22 16 34 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.08 1.42 7.00 -51.93 -0.36 1.06 16 41 H 0.05 0.65 7.62 -51.93 -0.40 0.26 16 42 H 0.09 1.13 6.80 -51.93 -0.35 0.78 16 LS Contribution 320.29 15.07 4.83 4.83 Total: -1.00 -28.57 320.29 -9.16 -37.73 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.98 Total: 0.88 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -0.83 Total: -6.12 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: -1.24 Total: -42.01 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.57 -9.16 -37.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004791.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.335 kcal (2) G-P(sol) polarization free energy of solvation -28.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds