Wall clock time and date at job start Mon Mar 30 2020 01:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.48554 * 110.99921 * 2 1 4 4 C 1.54386 * 104.59273 * 200.96093 * 3 2 1 5 5 C 1.54264 * 105.05869 * 23.85322 * 4 3 2 6 6 H 1.08997 * 110.32104 * 241.00041 * 5 4 3 7 7 C 1.50695 * 110.32009 * 118.89718 * 5 4 3 8 8 O 1.21274 * 120.00413 * 0.27043 * 7 5 4 9 9 N 1.34784 * 119.99635 * 180.02562 * 7 5 4 10 10 C 1.46918 * 120.63039 * 359.71713 * 9 7 5 11 11 C 1.52761 * 109.01190 * 233.58189 * 10 9 7 12 12 C 1.53040 * 109.38299 * 305.59408 * 11 10 9 13 13 C 1.50695 * 109.45717 * 181.25632 * 12 11 10 14 14 H 1.08002 * 120.00175 * 239.92973 * 13 12 11 15 15 C 1.37878 * 120.00507 * 59.93405 * 13 12 11 16 16 N 1.31515 * 119.99393 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00458 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.46977 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47129 * 119.99746 * 17 15 13 20 20 H 1.48497 * 109.46741 * 239.99805 * 17 15 13 21 21 C 1.53036 * 109.53902 * 61.23432 * 12 11 10 22 22 C 1.46931 * 120.62757 * 179.97438 * 9 7 5 23 23 C 1.48559 * 110.99663 * 244.58048 * 2 1 3 24 24 H 1.08993 * 109.47055 * 59.87045 * 1 2 3 25 25 H 1.09003 * 109.47304 * 179.87885 * 1 2 3 26 26 H 1.09003 * 109.46826 * 299.87328 * 1 2 3 27 27 H 1.09004 * 110.41197 * 82.18825 * 3 2 1 28 28 H 1.08997 * 110.41337 * 319.74326 * 3 2 1 29 29 H 1.08998 * 110.32303 * 264.95861 * 4 3 2 30 30 H 1.08998 * 110.32178 * 142.74891 * 4 3 2 31 31 H 1.08998 * 109.59258 * 353.42356 * 10 9 7 32 32 H 1.09001 * 109.58913 * 113.84319 * 10 9 7 33 33 H 1.08997 * 109.56476 * 185.55091 * 11 10 9 34 34 H 1.09006 * 109.35273 * 65.50044 * 11 10 9 35 35 H 1.08996 * 109.45822 * 301.21147 * 12 11 10 36 36 H 0.97008 * 119.99976 * 180.02562 * 16 15 13 37 37 H 1.09002 * 109.49840 * 178.68334 * 21 12 11 38 38 H 1.08997 * 109.52697 * 58.60592 * 21 12 11 39 39 H 1.09000 * 109.58531 * 246.15235 * 22 9 7 40 40 H 1.08997 * 109.58373 * 6.58294 * 22 9 7 41 41 H 1.09000 * 110.41190 * 40.26502 * 23 2 1 42 42 H 1.08999 * 110.41130 * 277.81959 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2500 -0.5345 5 6 3.4433 -0.0540 -1.3586 6 1 4.1496 -0.7687 -0.9363 7 6 3.7894 0.2355 -2.7964 8 8 4.0230 1.3728 -3.1467 9 7 3.8443 -0.7703 -3.6919 10 6 3.5753 -2.1547 -3.2802 11 6 4.7459 -3.0377 -3.7087 12 6 4.9904 -2.8641 -5.2094 13 6 6.1249 -3.7577 -5.6399 14 1 7.0132 -3.3287 -6.0796 15 6 6.0289 -5.1229 -5.4725 16 7 4.9474 -5.6452 -4.9367 17 14 7.4350 -6.2306 -6.0068 18 1 8.5283 -5.4027 -6.5764 19 1 7.9444 -6.9847 -4.8334 20 1 6.9497 -7.1849 -7.0359 21 6 5.3497 -1.4060 -5.5041 22 6 4.1799 -0.5037 -5.0973 23 6 2.0014 -0.5953 -1.2527 24 1 -0.3633 0.5158 -0.8888 25 1 -0.3634 -1.0277 -0.0022 26 1 -0.3633 0.5119 0.8912 27 1 2.0080 1.7916 1.0121 28 1 1.4099 2.0212 -0.6601 29 1 4.1484 1.1747 0.2934 30 1 3.6937 2.0995 -1.1700 31 1 3.4636 -2.1987 -2.1969 32 1 2.6613 -2.5071 -3.7583 33 1 4.5129 -4.0811 -3.4963 34 1 5.6399 -2.7447 -3.1581 35 1 4.0879 -3.1337 -5.7579 36 1 4.8800 -6.6057 -4.8186 37 1 5.5465 -1.2880 -6.5697 38 1 6.2381 -1.1280 -4.9372 39 1 3.3162 -0.7190 -5.7264 40 1 4.4672 0.5414 -5.2125 41 1 1.4098 -0.2712 -2.1089 42 1 2.0078 -1.6831 -1.1838 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260004791.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:06 Heat of formation + Delta-G solvation = -55.109114 kcal Electronic energy + Delta-G solvation = -21242.125622 eV Core-core repulsion = 18220.750894 eV Total energy + Delta-G solvation = -3021.374728 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.61617 -39.39082 -38.27512 -35.36884 -33.66818 -32.79003 -31.74971 -29.98417 -28.07556 -26.79148 -24.96615 -23.98305 -22.80983 -22.17320 -21.01538 -19.67250 -18.73232 -18.11769 -17.14982 -16.94300 -16.48639 -16.09518 -15.73403 -15.20462 -14.92015 -14.85234 -14.62416 -14.43525 -14.04404 -13.84460 -13.76351 -13.31137 -13.07954 -12.83095 -12.61784 -12.45133 -12.35873 -12.29840 -12.16750 -12.13676 -11.91271 -11.70807 -11.47228 -11.01263 -10.96846 -10.69343 -10.39503 -9.59358 -9.53689 -8.08085 -6.20956 1.40435 1.44070 1.53681 1.55816 2.03400 2.44423 3.02081 3.18886 3.51032 3.57793 3.69239 4.01539 4.19804 4.24445 4.26888 4.36218 4.42191 4.47812 4.51543 4.53529 4.56660 4.62981 4.74661 4.82513 4.86325 4.96585 4.96918 5.01715 5.11218 5.13712 5.18574 5.25066 5.42911 5.53996 5.65252 5.75117 5.97824 5.98519 6.13421 6.39305 6.48367 6.88401 7.12591 7.46948 8.95622 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.030683 B = 0.004646 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.325364 B = 6025.306163 C = 6521.140364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.521 5.521 3 C 0.035 3.965 4 C -0.115 4.115 5 C -0.112 4.112 6 H 0.115 0.885 7 C 0.515 3.485 8 O -0.585 6.585 9 N -0.600 5.600 10 C 0.113 3.887 11 C -0.117 4.117 12 C 0.045 3.955 13 C -0.535 4.535 14 H 0.046 0.954 15 C 0.020 3.980 16 N -0.911 5.911 17 Si 0.947 3.053 18 H -0.273 1.273 19 H -0.280 1.280 20 H -0.281 1.281 21 C -0.113 4.113 22 C 0.116 3.884 23 C 0.047 3.953 24 H 0.026 0.974 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.101 0.899 28 H 0.040 0.960 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.028 0.972 35 H 0.004 0.996 36 H 0.262 0.738 37 H 0.063 0.937 38 H 0.041 0.959 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.040 0.960 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.012 9.249 9.746 15.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.244 5.244 3 C -0.092 4.092 4 C -0.153 4.153 5 C -0.133 4.133 6 H 0.133 0.867 7 C 0.304 3.696 8 O -0.466 6.466 9 N -0.331 5.331 10 C -0.008 4.008 11 C -0.155 4.155 12 C 0.026 3.974 13 C -0.573 4.573 14 H 0.064 0.936 15 C -0.179 4.179 16 N -0.550 5.550 17 Si 0.774 3.226 18 H -0.198 1.198 19 H -0.205 1.205 20 H -0.207 1.207 21 C -0.151 4.151 22 C -0.007 4.007 23 C -0.081 4.081 24 H 0.045 0.955 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.119 0.881 28 H 0.059 0.941 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.047 0.953 35 H 0.022 0.978 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.827 9.352 10.073 15.818 hybrid contribution 0.606 -0.492 -1.406 1.608 sum -7.222 8.859 8.667 14.344 Atomic orbital electron populations 1.22589 0.86623 1.03069 1.01447 1.65456 1.09553 1.15701 1.33736 1.23173 0.94299 0.89824 1.01946 1.22325 0.97790 0.95990 0.99183 1.22048 0.99492 1.00952 0.90826 0.86745 1.20962 0.75937 0.84067 0.88586 1.90588 1.52516 1.22598 1.80936 1.48260 1.67447 1.08097 1.09341 1.21931 0.98633 0.79393 1.00880 1.21732 0.95475 1.00384 0.97932 1.18611 0.95157 0.90563 0.93019 1.21566 1.03108 0.92289 1.40346 0.93595 1.25602 0.97823 0.99295 0.95211 1.69944 1.28186 1.12017 1.44895 0.85667 0.79983 0.78925 0.78031 1.19796 1.20548 1.20671 1.21855 0.96596 0.96417 1.00260 1.21604 0.97953 0.99801 0.81295 1.23155 0.92135 1.01176 0.91652 0.95525 0.90383 0.89722 0.88059 0.94136 0.89168 0.90650 0.88162 0.91444 0.90000 0.95336 0.97772 0.92882 0.91858 0.94033 0.91177 0.90250 0.94180 0.88050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.53 127.69 1.22 1.40 16 2 N -0.52 -10.83 5.66 -907.61 -5.14 -15.97 16 3 C 0.04 0.70 6.49 86.45 0.56 1.26 16 4 C -0.11 -2.67 6.59 31.49 0.21 -2.46 16 5 C -0.11 -2.89 2.51 -10.65 -0.03 -2.92 16 6 H 0.11 2.82 7.60 -2.39 -0.02 2.80 16 7 C 0.52 17.19 6.94 87.65 0.61 17.80 16 8 O -0.58 -22.82 14.66 -3.01 -0.04 -22.86 16 9 N -0.60 -20.67 2.98 -819.68 -2.44 -23.11 16 10 C 0.11 3.81 5.67 86.22 0.49 4.30 16 11 C -0.12 -5.05 5.14 30.53 0.16 -4.89 16 12 C 0.05 2.14 2.07 -11.52 -0.02 2.12 16 13 C -0.54 -28.66 8.56 25.60 0.22 -28.44 16 14 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 15 C 0.02 1.05 5.30 84.65 0.45 1.50 16 16 N -0.91 -49.61 11.30 21.45 0.24 -49.37 16 17 Si 0.95 42.49 29.54 68.60 2.03 44.52 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 C -0.11 -4.63 5.30 30.68 0.16 -4.47 16 22 C 0.12 4.17 6.44 86.37 0.56 4.72 16 23 C 0.05 1.09 4.92 86.45 0.43 1.51 16 24 H 0.03 0.46 7.97 -2.39 -0.02 0.44 16 25 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.04 0.84 7.97 -2.39 -0.02 0.82 16 29 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16 30 H 0.07 2.07 6.46 -2.39 -0.02 2.05 16 31 H 0.10 2.80 4.45 -2.39 -0.01 2.78 16 32 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.08 3.97 6.03 -2.39 -0.01 3.96 16 34 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.00 0.21 8.14 -2.39 -0.02 0.20 16 36 H 0.26 13.58 8.31 -92.70 -0.77 12.81 16 37 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.08 2.85 7.00 -2.39 -0.02 2.84 16 41 H 0.04 1.00 7.62 -2.39 -0.02 0.98 16 42 H 0.10 2.17 6.80 -2.39 -0.02 2.16 16 Total: -1.00 -60.63 320.29 0.63 -59.99 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.99 Total: 15.37 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 5.00 Total: -8.57 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -7.34 Total: -88.45 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.04 Total: -22.86 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -60.63 0.63 -59.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004791.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.883 kcal (2) G-P(sol) polarization free energy of solvation -60.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds