Wall clock time and date at job start Mon Mar 30 2020 01:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.48560 * 111.00376 * 2 1 4 4 C 1.54376 * 104.59983 * 200.96326 * 3 2 1 5 5 C 1.54265 * 105.06030 * 23.85124 * 4 3 2 6 6 H 1.08997 * 110.32361 * 241.00334 * 5 4 3 7 7 C 1.50697 * 110.32282 * 118.89724 * 5 4 3 8 8 O 1.21277 * 120.00423 * 359.97438 * 7 5 4 9 9 N 1.34779 * 119.99696 * 180.02562 * 7 5 4 10 10 C 1.46931 * 120.63325 * 0.02562 * 9 7 5 11 11 C 1.53189 * 108.77562 * 126.36842 * 10 9 7 12 12 C 1.53032 * 109.34184 * 54.62049 * 11 10 9 13 13 C 1.53044 * 109.53779 * 298.68396 * 12 11 10 14 14 H 1.08999 * 109.49711 * 301.34662 * 13 12 11 15 15 C 1.50706 * 109.49547 * 181.28405 * 13 12 11 16 16 H 1.07994 * 119.99858 * 245.73752 * 15 13 12 17 17 C 1.37882 * 119.99880 * 65.74126 * 15 13 12 18 18 N 1.31512 * 119.99650 * 197.68146 * 17 15 13 19 19 Si 1.86800 * 120.00181 * 17.40625 * 17 15 13 20 20 H 1.48495 * 109.46928 * 180.27721 * 19 17 15 21 21 H 1.48494 * 109.46977 * 300.27573 * 19 17 15 22 22 H 1.48498 * 109.47189 * 60.27700 * 19 17 15 23 23 C 1.46929 * 120.62894 * 179.97438 * 9 7 5 24 24 C 1.48561 * 110.99757 * 244.58257 * 2 1 3 25 25 H 1.08993 * 109.47686 * 60.12247 * 1 2 3 26 26 H 1.08998 * 109.47281 * 180.12636 * 1 2 3 27 27 H 1.09000 * 109.47019 * 300.12417 * 1 2 3 28 28 H 1.09000 * 110.41308 * 82.18214 * 3 2 1 29 29 H 1.09007 * 110.51107 * 319.79219 * 3 2 1 30 30 H 1.09004 * 110.32226 * 264.95999 * 4 3 2 31 31 H 1.09002 * 110.41133 * 142.78936 * 4 3 2 32 32 H 1.09000 * 109.58311 * 246.15870 * 10 9 7 33 33 H 1.08998 * 109.58245 * 6.58118 * 10 9 7 34 34 H 1.09000 * 109.49501 * 174.59267 * 11 10 9 35 35 H 1.09003 * 109.49957 * 294.64753 * 11 10 9 36 36 H 1.08997 * 109.48604 * 178.64709 * 12 11 10 37 37 H 1.09000 * 109.43476 * 58.68349 * 12 11 10 38 38 H 0.97000 * 120.00141 * 354.34014 * 18 17 15 39 39 H 1.08997 * 109.58065 * 113.84554 * 23 9 7 40 40 H 1.08998 * 109.70230 * 353.48820 * 23 9 7 41 41 H 1.08992 * 110.41403 * 40.26438 * 24 2 1 42 42 H 1.09005 * 110.41119 * 277.81617 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4432 1.2501 -0.5345 5 6 3.4432 -0.0539 -1.3586 6 1 4.1496 -0.7686 -0.9364 7 6 3.7893 0.2356 -2.7964 8 8 4.0175 1.3737 -3.1480 9 7 3.8443 -0.7701 -3.6920 10 6 3.5688 -2.1538 -3.2817 11 6 2.4804 -2.7307 -4.1924 12 6 2.9110 -2.5824 -5.6534 13 6 3.0852 -1.0991 -5.9876 14 1 2.1468 -0.5736 -5.8106 15 6 3.4786 -0.9524 -7.4350 16 1 4.4531 -0.5654 -7.6931 17 6 2.5941 -1.3125 -8.4296 18 7 3.0295 -1.5199 -9.6531 19 14 0.7788 -1.5130 -8.0376 20 1 0.0474 -1.9080 -9.2681 21 1 0.6091 -2.5637 -7.0022 22 1 0.2367 -0.2266 -7.5310 23 6 4.1798 -0.5036 -5.0974 24 6 2.0013 -0.5953 -1.2527 25 1 -0.3634 0.5119 -0.8910 26 1 -0.3634 -1.0276 0.0023 27 1 -0.3633 0.5158 0.8889 28 1 2.0079 1.7916 1.0121 29 1 1.4104 2.0229 -0.6591 30 1 4.1483 1.1747 0.2934 31 1 3.6953 2.0994 -1.1696 32 1 4.4766 -2.7500 -3.3741 33 1 3.2245 -2.1665 -2.2475 34 1 2.3344 -3.7859 -3.9614 35 1 1.5474 -2.1907 -4.0314 36 1 2.1491 -3.0138 -6.3026 37 1 3.8563 -3.1027 -5.8075 38 1 3.9566 -1.3406 -9.8750 39 1 5.1375 -0.9650 -5.3381 40 1 4.2405 0.5721 -5.2630 41 1 1.4098 -0.2712 -2.1089 42 1 2.0078 -1.6831 -1.1838 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260079625.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:09 Heat of formation + Delta-G solvation = -34.650509 kcal Electronic energy + Delta-G solvation = -21528.165271 eV Core-core repulsion = 18507.677695 eV Total energy + Delta-G solvation = -3020.487576 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.42620 -38.29833 -36.91899 -33.65055 -32.38508 -31.73752 -30.62263 -29.03440 -26.18619 -24.90113 -24.77351 -21.75725 -21.54453 -21.38024 -19.51248 -18.33720 -17.62951 -17.25910 -16.15524 -15.49189 -15.09216 -14.68248 -14.38220 -14.22039 -13.84847 -13.53557 -13.29270 -12.95448 -12.83723 -12.80349 -12.39417 -12.09548 -11.81846 -11.69458 -11.46922 -11.32113 -11.21207 -10.89836 -10.81108 -10.64391 -10.32397 -10.07712 -9.76079 -9.66598 -9.42174 -8.85772 -8.72567 -8.27557 -8.11282 -6.48876 -4.10556 2.86218 3.32106 3.33307 3.40775 3.57530 3.89007 4.45115 4.45184 4.50882 4.70852 5.00681 5.09105 5.14382 5.21118 5.24508 5.27575 5.34947 5.40326 5.49325 5.58136 5.66541 5.68995 5.77987 5.90427 5.97736 6.00617 6.06597 6.12803 6.18130 6.38080 6.51816 6.58290 6.70005 6.75719 6.84910 6.87977 7.21029 7.43966 7.82054 8.06566 8.34261 8.48578 8.86441 9.57894 10.91100 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.025201 B = 0.005656 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.810563 B = 4949.507669 C = 5289.882816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.515 5.515 3 C 0.031 3.969 4 C -0.116 4.116 5 C -0.114 4.114 6 H 0.103 0.897 7 C 0.514 3.486 8 O -0.546 6.546 9 N -0.604 5.604 10 C 0.102 3.898 11 C -0.138 4.138 12 C -0.124 4.124 13 C 0.013 3.987 14 H 0.022 0.978 15 C -0.599 4.599 16 H 0.057 0.943 17 C 0.033 3.967 18 N -0.906 5.906 19 Si 1.046 2.954 20 H -0.286 1.286 21 H -0.273 1.273 22 H -0.285 1.285 23 C 0.127 3.873 24 C 0.041 3.959 25 H 0.030 0.970 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.268 0.732 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.052 0.948 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.954 -0.867 19.670 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.239 5.239 3 C -0.097 4.097 4 C -0.155 4.155 5 C -0.136 4.136 6 H 0.121 0.879 7 C 0.301 3.699 8 O -0.424 6.424 9 N -0.336 5.336 10 C -0.021 4.021 11 C -0.177 4.177 12 C -0.161 4.161 13 C -0.007 4.007 14 H 0.040 0.960 15 C -0.637 4.637 16 H 0.075 0.925 17 C -0.172 4.172 18 N -0.540 5.540 19 Si 0.875 3.125 20 H -0.212 1.212 21 H -0.200 1.200 22 H -0.211 1.211 23 C 0.006 3.994 24 C -0.087 4.087 25 H 0.049 0.951 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.071 0.929 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.123 -1.024 19.274 19.737 hybrid contribution 1.179 0.736 -0.143 1.397 sum -2.944 -0.288 19.131 19.358 Atomic orbital electron populations 1.22518 0.87863 1.02357 1.00977 1.65439 1.08366 1.15673 1.34431 1.23157 0.95457 0.89965 1.01099 1.22328 0.96366 0.97561 0.99195 1.22026 0.98274 0.99897 0.93354 0.87909 1.20401 0.77183 0.84947 0.87387 1.90640 1.50582 1.21187 1.80029 1.48326 1.67884 1.06942 1.10472 1.21893 0.99058 0.82409 0.98694 1.22015 0.97919 0.99862 0.97866 1.22072 1.01162 1.00289 0.92622 1.19285 0.94371 0.91410 0.95632 0.96009 1.21883 1.03163 1.48968 0.89687 0.92510 1.25730 1.05170 0.92911 0.93420 1.70855 1.19257 1.42290 1.21581 0.84024 0.75650 0.77104 0.75695 1.21221 1.19992 1.21138 1.21796 0.98730 1.01863 0.77019 1.23234 0.93399 1.00334 0.91721 0.95107 0.91096 0.91208 0.89954 0.93543 0.90699 0.88677 0.91584 0.90115 0.91745 0.92357 0.91711 0.92660 0.92198 0.92359 0.89955 0.92925 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.53 60.06 0.57 0.68 16 2 N -0.52 -5.74 5.66 -238.24 -1.35 -7.09 16 3 C 0.03 0.34 6.49 -2.18 -0.01 0.33 16 4 C -0.12 -1.40 6.59 -25.35 -0.17 -1.56 16 5 C -0.11 -1.45 2.52 -90.38 -0.23 -1.68 16 6 H 0.10 1.13 7.86 -51.93 -0.41 0.72 16 7 C 0.51 8.80 6.94 -10.99 -0.08 8.73 16 8 O -0.55 -11.34 14.67 5.56 0.08 -11.26 16 9 N -0.60 -10.51 2.97 -172.80 -0.51 -11.03 16 10 C 0.10 1.43 5.98 -3.71 -0.02 1.40 16 11 C -0.14 -2.14 6.08 -26.62 -0.16 -2.30 16 12 C -0.12 -2.50 4.86 -26.69 -0.13 -2.63 16 13 C 0.01 0.30 1.83 -91.67 -0.17 0.13 16 14 H 0.02 0.53 6.80 -51.93 -0.35 0.18 16 15 C -0.60 -16.56 8.83 -34.44 -0.30 -16.86 16 16 H 0.06 1.69 7.99 -52.49 -0.42 1.27 16 17 C 0.03 0.94 5.33 -17.82 -0.09 0.84 16 18 N -0.91 -27.55 13.69 55.43 0.76 -26.79 16 19 Si 1.05 25.04 26.35 -169.99 -4.48 20.56 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.27 -5.92 5.63 56.52 0.32 -5.60 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 C 0.13 2.67 5.65 -3.73 -0.02 2.65 16 24 C 0.04 0.49 4.91 -2.18 -0.01 0.48 16 25 H 0.03 0.31 7.97 -51.93 -0.41 -0.10 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.54 7.98 -51.92 -0.41 0.13 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.35 6.46 -51.93 -0.34 1.01 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.89 3.94 -51.93 -0.20 0.69 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 1.40 4.81 -51.93 -0.25 1.15 16 37 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.27 8.12 8.73 -40.82 -0.36 7.76 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.08 1.90 7.01 -51.93 -0.36 1.54 16 41 H 0.05 0.72 7.61 -51.93 -0.40 0.33 16 42 H 0.09 0.95 6.51 -51.93 -0.34 0.61 16 LS Contribution 315.67 15.07 4.76 4.76 Total: -1.00 -31.36 315.67 -8.51 -39.87 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.94 Total: 0.78 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -0.82 Total: -9.80 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: -1.10 Total: -44.91 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -4.48 Total: 20.56 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.36 -8.51 -39.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260079625.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.218 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds