Wall clock time and date at job start Mon Mar 30 2020 01:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.48560 * 111.00376 * 2 1 4 4 C 1.54376 * 104.59983 * 200.96326 * 3 2 1 5 5 C 1.54265 * 105.06030 * 23.85124 * 4 3 2 6 6 H 1.08997 * 110.32361 * 241.00334 * 5 4 3 7 7 C 1.50697 * 110.32282 * 118.89724 * 5 4 3 8 8 O 1.21277 * 120.00423 * 359.97438 * 7 5 4 9 9 N 1.34779 * 119.99696 * 180.02562 * 7 5 4 10 10 C 1.46931 * 120.63325 * 0.02562 * 9 7 5 11 11 C 1.53189 * 108.77562 * 126.36842 * 10 9 7 12 12 C 1.53032 * 109.34184 * 54.62049 * 11 10 9 13 13 C 1.53044 * 109.53779 * 298.68396 * 12 11 10 14 14 H 1.08999 * 109.49711 * 301.34662 * 13 12 11 15 15 C 1.50706 * 109.49547 * 181.28405 * 13 12 11 16 16 H 1.07994 * 119.99858 * 245.73752 * 15 13 12 17 17 C 1.37882 * 119.99880 * 65.74126 * 15 13 12 18 18 N 1.31512 * 119.99650 * 197.68146 * 17 15 13 19 19 Si 1.86800 * 120.00181 * 17.40625 * 17 15 13 20 20 H 1.48495 * 109.46928 * 180.27721 * 19 17 15 21 21 H 1.48494 * 109.46977 * 300.27573 * 19 17 15 22 22 H 1.48498 * 109.47189 * 60.27700 * 19 17 15 23 23 C 1.46929 * 120.62894 * 179.97438 * 9 7 5 24 24 C 1.48561 * 110.99757 * 244.58257 * 2 1 3 25 25 H 1.08993 * 109.47686 * 60.12247 * 1 2 3 26 26 H 1.08998 * 109.47281 * 180.12636 * 1 2 3 27 27 H 1.09000 * 109.47019 * 300.12417 * 1 2 3 28 28 H 1.09000 * 110.41308 * 82.18214 * 3 2 1 29 29 H 1.09007 * 110.51107 * 319.79219 * 3 2 1 30 30 H 1.09004 * 110.32226 * 264.95999 * 4 3 2 31 31 H 1.09002 * 110.41133 * 142.78936 * 4 3 2 32 32 H 1.09000 * 109.58311 * 246.15870 * 10 9 7 33 33 H 1.08998 * 109.58245 * 6.58118 * 10 9 7 34 34 H 1.09000 * 109.49501 * 174.59267 * 11 10 9 35 35 H 1.09003 * 109.49957 * 294.64753 * 11 10 9 36 36 H 1.08997 * 109.48604 * 178.64709 * 12 11 10 37 37 H 1.09000 * 109.43476 * 58.68349 * 12 11 10 38 38 H 0.97000 * 120.00141 * 354.34014 * 18 17 15 39 39 H 1.08997 * 109.58065 * 113.84554 * 23 9 7 40 40 H 1.08998 * 109.70230 * 353.48820 * 23 9 7 41 41 H 1.08992 * 110.41403 * 40.26438 * 24 2 1 42 42 H 1.09005 * 110.41119 * 277.81617 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4432 1.2501 -0.5345 5 6 3.4432 -0.0539 -1.3586 6 1 4.1496 -0.7686 -0.9364 7 6 3.7893 0.2356 -2.7964 8 8 4.0175 1.3737 -3.1480 9 7 3.8443 -0.7701 -3.6920 10 6 3.5688 -2.1538 -3.2817 11 6 2.4804 -2.7307 -4.1924 12 6 2.9110 -2.5824 -5.6534 13 6 3.0852 -1.0991 -5.9876 14 1 2.1468 -0.5736 -5.8106 15 6 3.4786 -0.9524 -7.4350 16 1 4.4531 -0.5654 -7.6931 17 6 2.5941 -1.3125 -8.4296 18 7 3.0295 -1.5199 -9.6531 19 14 0.7788 -1.5130 -8.0376 20 1 0.0474 -1.9080 -9.2681 21 1 0.6091 -2.5637 -7.0022 22 1 0.2367 -0.2266 -7.5310 23 6 4.1798 -0.5036 -5.0974 24 6 2.0013 -0.5953 -1.2527 25 1 -0.3634 0.5119 -0.8910 26 1 -0.3634 -1.0276 0.0023 27 1 -0.3633 0.5158 0.8889 28 1 2.0079 1.7916 1.0121 29 1 1.4104 2.0229 -0.6591 30 1 4.1483 1.1747 0.2934 31 1 3.6953 2.0994 -1.1696 32 1 4.4766 -2.7500 -3.3741 33 1 3.2245 -2.1665 -2.2475 34 1 2.3344 -3.7859 -3.9614 35 1 1.5474 -2.1907 -4.0314 36 1 2.1491 -3.0138 -6.3026 37 1 3.8563 -3.1027 -5.8075 38 1 3.9566 -1.3406 -9.8750 39 1 5.1375 -0.9650 -5.3381 40 1 4.2405 0.5721 -5.2630 41 1 1.4098 -0.2712 -2.1089 42 1 2.0078 -1.6831 -1.1838 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260079625.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:08 Heat of formation + Delta-G solvation = -57.352244 kcal Electronic energy + Delta-G solvation = -21529.149692 eV Core-core repulsion = 18507.677695 eV Total energy + Delta-G solvation = -3021.471998 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.67846 -39.42520 -38.36308 -35.49095 -33.70927 -33.14845 -32.14912 -30.08235 -27.24244 -26.59479 -26.14281 -23.10387 -22.93123 -22.28140 -21.07735 -19.87100 -19.46306 -18.53360 -17.22465 -16.76044 -16.39881 -16.09155 -15.74806 -15.25308 -15.18647 -14.97181 -14.62941 -14.51485 -14.17737 -14.05983 -13.82917 -13.64993 -13.08180 -12.76764 -12.63551 -12.41315 -12.32108 -12.30318 -12.15202 -11.93069 -11.87483 -11.70291 -11.46248 -11.31636 -10.88355 -10.83572 -10.41829 -9.65241 -9.56366 -8.77618 -6.40607 1.39517 1.48897 1.54333 1.68186 1.99666 2.43798 3.00403 3.03121 3.47712 3.55522 3.68683 3.95897 4.10536 4.13706 4.22701 4.25265 4.32186 4.39924 4.48833 4.51116 4.54183 4.58613 4.69420 4.75192 4.79296 4.89797 4.93212 4.99560 5.02013 5.09889 5.12313 5.14958 5.23889 5.42629 5.43880 5.69072 5.73010 5.94429 5.98296 6.06092 6.46870 6.53347 7.13114 7.36646 8.60358 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.025201 B = 0.005656 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.810563 B = 4949.507669 C = 5289.882816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.513 5.513 3 C 0.032 3.968 4 C -0.117 4.117 5 C -0.105 4.105 6 H 0.133 0.867 7 C 0.508 3.492 8 O -0.593 6.593 9 N -0.606 5.606 10 C 0.100 3.900 11 C -0.132 4.132 12 C -0.121 4.121 13 C 0.014 3.986 14 H 0.013 0.987 15 C -0.605 4.605 16 H 0.016 0.984 17 C -0.017 4.017 18 N -0.938 5.938 19 Si 1.083 2.917 20 H -0.288 1.288 21 H -0.230 1.230 22 H -0.278 1.278 23 C 0.138 3.862 24 C 0.043 3.957 25 H 0.019 0.981 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.031 0.969 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.252 0.748 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.031 0.969 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.574 -2.952 23.546 24.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.236 5.236 3 C -0.096 4.096 4 C -0.155 4.155 5 C -0.127 4.127 6 H 0.151 0.849 7 C 0.297 3.703 8 O -0.474 6.474 9 N -0.337 5.337 10 C -0.022 4.022 11 C -0.170 4.170 12 C -0.159 4.159 13 C -0.006 4.006 14 H 0.031 0.969 15 C -0.643 4.643 16 H 0.034 0.966 17 C -0.215 4.215 18 N -0.574 5.574 19 Si 0.904 3.096 20 H -0.215 1.215 21 H -0.154 1.154 22 H -0.204 1.204 23 C 0.015 3.985 24 C -0.085 4.085 25 H 0.038 0.962 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.121 0.879 29 H 0.050 0.950 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.138 0.862 34 H 0.123 0.877 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.049 0.951 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.728 -3.136 23.195 24.097 hybrid contribution 1.786 1.484 -1.373 2.698 sum -3.942 -1.652 21.822 22.237 Atomic orbital electron populations 1.22601 0.86808 1.03325 1.01160 1.65502 1.09344 1.15272 1.33511 1.23180 0.94449 0.90092 1.01848 1.22334 0.97716 0.96181 0.99314 1.22091 0.99747 1.01112 0.89753 0.84874 1.21277 0.75879 0.84037 0.89066 1.90627 1.52403 1.23220 1.81138 1.48359 1.67775 1.08929 1.08617 1.22212 0.99554 0.80050 1.00340 1.21989 0.98230 1.02647 0.94104 1.21902 1.00777 0.96881 0.96302 1.19218 0.94247 0.94133 0.93028 0.96883 1.22153 1.01375 1.47854 0.92901 0.96602 1.27156 1.09284 0.92283 0.92742 1.70985 1.18332 1.45045 1.23007 0.83608 0.70516 0.78722 0.76744 1.21463 1.15386 1.20438 1.21306 0.97899 0.99579 0.79744 1.23267 0.92076 1.01740 0.91420 0.96194 0.89754 0.89824 0.87915 0.95032 0.88434 0.91518 0.90024 0.86190 0.87744 0.92080 0.92926 0.93185 0.93910 0.92898 0.93213 0.95092 0.86400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.53 127.69 1.22 1.36 16 2 N -0.51 -9.46 5.66 -907.64 -5.14 -14.59 16 3 C 0.03 0.62 6.49 86.45 0.56 1.19 16 4 C -0.12 -2.56 6.59 31.49 0.21 -2.36 16 5 C -0.11 -2.36 2.52 -10.64 -0.03 -2.39 16 6 H 0.13 2.24 7.86 -2.39 -0.02 2.22 16 7 C 0.51 16.86 6.94 87.66 0.61 17.47 16 8 O -0.59 -25.23 14.67 -3.02 -0.04 -25.27 16 9 N -0.61 -20.15 2.97 -818.99 -2.43 -22.59 16 10 C 0.10 2.34 5.98 86.36 0.52 2.86 16 11 C -0.13 -3.48 6.08 30.67 0.19 -3.30 16 12 C -0.12 -4.65 4.86 30.62 0.15 -4.50 16 13 C 0.01 0.63 1.83 -11.47 -0.02 0.61 16 14 H 0.01 0.64 6.80 -2.39 -0.02 0.62 16 15 C -0.60 -34.87 8.83 25.60 0.23 -34.65 16 16 H 0.02 1.00 7.99 -2.91 -0.02 0.98 16 17 C -0.02 -0.97 5.33 84.66 0.45 -0.51 16 18 N -0.94 -59.30 13.69 21.45 0.29 -59.00 16 19 Si 1.08 50.15 26.35 68.60 1.81 51.96 16 20 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 21 H -0.23 -9.04 5.63 99.48 0.56 -8.48 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 C 0.14 5.94 5.65 86.35 0.49 6.42 16 24 C 0.04 0.85 4.91 86.45 0.42 1.28 16 25 H 0.02 0.35 7.97 -2.39 -0.02 0.33 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.03 0.70 7.98 -2.38 -0.02 0.68 16 30 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.07 1.88 6.46 -2.39 -0.02 1.86 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.12 1.93 3.94 -2.39 -0.01 1.92 16 34 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.05 2.14 4.81 -2.39 -0.01 2.13 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.25 16.19 8.73 -92.71 -0.81 15.38 16 39 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.05 2.43 7.01 -2.39 -0.02 2.42 16 41 H 0.03 0.76 7.61 -2.39 -0.02 0.74 16 42 H 0.12 1.72 6.51 -2.38 -0.02 1.71 16 Total: -1.00 -73.43 315.67 0.28 -73.15 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.81 Total: 12.86 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: 4.99 Total: -16.52 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -7.28 Total: -96.18 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.04 Total: -25.27 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 1.81 Total: 51.96 kcal Total: -73.43 0.28 -73.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260079625.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.801 kcal (2) G-P(sol) polarization free energy of solvation -73.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds