Wall clock time and date at job start Mon Mar 30 2020 01:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47443 * 111.00227 * 2 1 4 4 C 1.54312 * 107.23612 * 236.74273 * 3 2 1 5 5 C 1.55142 * 103.17714 * 337.62814 * 4 3 2 6 6 H 1.08996 * 110.99420 * 277.65160 * 5 4 3 7 7 C 1.50700 * 110.99048 * 153.83199 * 5 4 3 8 8 O 1.21280 * 120.00008 * 0.02562 * 7 5 4 9 9 N 1.34775 * 120.00050 * 180.02562 * 7 5 4 10 10 C 1.46929 * 120.63198 * 359.97438 * 9 7 5 11 11 C 1.53194 * 108.77628 * 233.59207 * 10 9 7 12 12 C 1.53033 * 109.31375 * 305.36596 * 11 10 9 13 13 C 1.53042 * 109.54159 * 61.36495 * 12 11 10 14 14 H 1.08998 * 109.49664 * 58.58648 * 13 12 11 15 15 C 1.50696 * 109.50002 * 178.65377 * 13 12 11 16 16 H 1.08001 * 120.00111 * 119.99958 * 15 13 12 17 17 C 1.37882 * 119.99652 * 299.99876 * 15 13 12 18 18 N 1.31509 * 120.00087 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99590 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46895 * 90.00600 * 19 17 15 21 21 H 1.48502 * 109.46689 * 209.99882 * 19 17 15 22 22 H 1.48496 * 109.47474 * 330.00066 * 19 17 15 23 23 C 1.46929 * 120.63244 * 179.72510 * 9 7 5 24 24 C 1.47844 * 110.99982 * 239.15844 * 2 1 3 25 25 H 1.09002 * 109.47062 * 59.87336 * 1 2 3 26 26 H 1.08998 * 109.47146 * 179.86779 * 1 2 3 27 27 H 1.08995 * 109.47111 * 299.87499 * 1 2 3 28 28 H 1.08997 * 109.88254 * 117.33308 * 3 2 1 29 29 H 1.09003 * 109.88840 * 356.15438 * 3 2 1 30 30 H 1.09002 * 110.70596 * 96.10119 * 4 3 2 31 31 H 1.09005 * 110.70742 * 219.16269 * 4 3 2 32 32 H 1.09002 * 109.58514 * 353.37736 * 10 9 7 33 33 H 1.08999 * 109.58704 * 113.65746 * 10 9 7 34 34 H 1.09007 * 109.49540 * 65.31991 * 11 10 9 35 35 H 1.09003 * 109.49649 * 185.41081 * 11 10 9 36 36 H 1.08999 * 109.45857 * 181.39002 * 12 11 10 37 37 H 1.09002 * 109.45940 * 301.34776 * 12 11 10 38 38 H 0.97005 * 120.00142 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.58250 * 246.19825 * 23 9 7 40 40 H 1.09004 * 109.58582 * 6.61628 * 23 9 7 41 41 H 1.08999 * 110.37744 * 265.19940 * 24 2 1 42 42 H 1.09007 * 110.37325 * 27.42750 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9159 1.5137 -1.2324 5 6 3.3089 0.0459 -1.5457 6 1 4.1343 -0.2808 -0.9133 7 6 3.6498 -0.1221 -3.0040 8 8 3.5935 0.8297 -3.7535 9 7 4.0171 -1.3302 -3.4753 10 6 4.0905 -2.4925 -2.5796 11 6 5.4790 -3.1270 -2.7078 12 6 5.7548 -3.4483 -4.1784 13 6 5.7371 -2.1553 -4.9970 14 1 6.4882 -1.4681 -4.6078 15 6 6.0414 -2.4689 -6.4392 16 1 5.3208 -2.2299 -7.2074 17 6 7.2398 -3.0607 -6.7780 18 7 8.1169 -3.3521 -5.8425 19 14 7.6166 -3.4500 -8.5657 20 1 8.2980 -2.2887 -9.1921 21 1 8.5014 -4.6405 -8.6371 22 1 6.3503 -3.7303 -9.2890 23 6 4.3466 -1.5111 -4.8957 24 6 1.9988 -0.7076 -1.1851 25 1 -0.3633 0.5158 -0.8889 26 1 -0.3633 -1.0276 -0.0024 27 1 -0.3633 0.5119 0.8911 28 1 2.5697 1.5539 0.9106 29 1 1.1756 2.0892 -0.0687 30 1 2.3744 1.9547 -2.0694 31 1 3.7986 2.1059 -0.9913 32 1 3.9291 -2.1715 -1.5505 33 1 3.3274 -3.2186 -2.8598 34 1 6.2326 -2.4305 -2.3401 35 1 5.5149 -4.0453 -2.1217 36 1 6.7320 -3.9224 -4.2694 37 1 4.9867 -4.1253 -4.5524 38 1 8.9598 -3.7688 -6.0808 39 1 3.6055 -2.1597 -5.3629 40 1 4.3540 -0.5423 -5.3953 41 1 2.2147 -1.7477 -0.9410 42 1 1.2880 -0.6517 -2.0096 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260079633.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:14 Heat of formation + Delta-G solvation = -38.051297 kcal Electronic energy + Delta-G solvation = -21188.459009 eV Core-core repulsion = 18167.823963 eV Total energy + Delta-G solvation = -3020.635046 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.21712 -38.29853 -36.68729 -33.56451 -32.25493 -31.33872 -30.33011 -28.98544 -26.12878 -25.09513 -24.60247 -21.99231 -21.72296 -20.97619 -19.54964 -18.31216 -17.11143 -16.40466 -15.99940 -15.55602 -14.87003 -14.58719 -14.43878 -13.97456 -13.61000 -13.49532 -13.21670 -13.12781 -12.75089 -12.63331 -12.11677 -12.02647 -11.80123 -11.57704 -11.43360 -11.21626 -10.99384 -10.84609 -10.78190 -10.72160 -10.30313 -9.96172 -9.81128 -9.50166 -9.30486 -8.83672 -8.52780 -8.39854 -7.91057 -6.02920 -4.10131 2.98163 3.29358 3.35825 3.38023 3.45353 3.89862 4.41602 4.43375 4.56984 4.80395 5.09942 5.12895 5.17944 5.26169 5.27483 5.34187 5.39226 5.51820 5.63276 5.64855 5.70364 5.79209 5.82475 5.98130 6.11557 6.16792 6.32532 6.38508 6.47143 6.64602 6.70293 6.79398 6.82201 6.95446 7.15886 7.32368 7.67941 7.90241 7.99868 8.06480 8.36307 8.61953 8.93448 9.54830 11.02517 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.040387 B = 0.004354 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.121274 B = 6429.582313 C = 6688.020267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.534 5.534 3 C 0.040 3.960 4 C -0.123 4.123 5 C -0.119 4.119 6 H 0.108 0.892 7 C 0.518 3.482 8 O -0.551 6.551 9 N -0.600 5.600 10 C 0.106 3.894 11 C -0.135 4.135 12 C -0.112 4.112 13 C 0.041 3.959 14 H 0.029 0.971 15 C -0.515 4.515 16 H 0.057 0.943 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.116 3.884 24 C 0.053 3.947 25 H 0.028 0.972 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.035 0.965 38 H 0.260 0.740 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.477 3.317 12.497 17.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.258 5.258 3 C -0.087 4.087 4 C -0.161 4.161 5 C -0.141 4.141 6 H 0.126 0.874 7 C 0.304 3.696 8 O -0.429 6.429 9 N -0.331 5.331 10 C -0.017 4.017 11 C -0.173 4.173 12 C -0.151 4.151 13 C 0.022 3.978 14 H 0.047 0.953 15 C -0.553 4.553 16 H 0.075 0.925 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.005 4.005 24 C -0.075 4.075 25 H 0.046 0.954 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.114 0.886 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.189 3.468 12.567 17.180 hybrid contribution 0.064 0.016 -1.630 1.631 sum -11.124 3.484 10.938 15.985 Atomic orbital electron populations 1.22550 0.87606 1.02146 1.00648 1.63625 1.08044 1.14470 1.39631 1.22893 0.98016 0.89198 0.98641 1.22648 1.00305 0.95197 0.97988 1.22503 0.99298 0.97657 0.94672 0.87444 1.20196 0.77267 0.82806 0.89294 1.90652 1.54087 1.39161 1.59047 1.48299 1.65501 1.08109 1.11223 1.21863 0.98865 0.87851 0.93126 1.22007 0.95153 0.99451 1.00725 1.21630 1.03194 0.99963 0.90264 1.19039 0.90048 0.93013 0.95744 0.95264 1.21082 1.02194 1.40027 0.92038 0.92505 1.24934 0.96065 0.95489 0.97295 1.69870 1.08223 1.42590 1.32072 0.86579 0.78280 0.77858 0.85201 1.20666 1.21237 1.19885 1.22095 0.99086 1.01371 0.77949 1.23193 0.94225 0.98707 0.91368 0.95379 0.91301 0.91305 0.90243 0.92511 0.90047 0.90246 0.90722 0.91917 0.92361 0.92394 0.88616 0.94587 0.92966 0.92701 0.90358 0.89204 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.12 60.06 0.55 0.72 16 2 N -0.53 -5.82 5.44 -239.21 -1.30 -7.13 16 3 C 0.04 0.41 6.90 -2.84 -0.02 0.39 16 4 C -0.12 -1.53 6.05 -24.91 -0.15 -1.68 16 5 C -0.12 -1.62 2.40 -89.38 -0.21 -1.83 16 6 H 0.11 1.36 7.53 -51.93 -0.39 0.97 16 7 C 0.52 9.31 7.08 -10.99 -0.08 9.23 16 8 O -0.55 -11.88 15.13 5.56 0.08 -11.80 16 9 N -0.60 -11.01 2.97 -172.52 -0.51 -11.52 16 10 C 0.11 1.62 5.67 -3.71 -0.02 1.59 16 11 C -0.14 -2.37 6.08 -26.61 -0.16 -2.53 16 12 C -0.11 -2.50 4.96 -26.69 -0.13 -2.63 16 13 C 0.04 1.00 2.26 -91.45 -0.21 0.79 16 14 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 15 C -0.51 -13.94 8.57 -34.44 -0.29 -14.23 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 18 N -0.89 -24.89 11.31 55.43 0.63 -24.26 16 19 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 C 0.12 2.51 5.68 -3.50 -0.02 2.49 16 24 C 0.05 0.63 5.54 -2.04 -0.01 0.62 16 25 H 0.03 0.26 8.11 -51.93 -0.42 -0.16 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.53 7.58 -51.93 -0.39 0.13 16 30 H 0.08 1.15 7.39 -51.93 -0.38 0.76 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.93 4.61 -51.93 -0.24 0.69 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.10 2.42 6.04 -51.93 -0.31 2.11 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.08 1.83 7.00 -51.93 -0.36 1.47 16 41 H 0.09 0.98 6.56 -51.93 -0.34 0.63 16 42 H 0.05 0.65 7.68 -51.93 -0.40 0.25 16 LS Contribution 321.30 15.07 4.84 4.84 Total: -1.00 -29.84 321.30 -9.15 -39.00 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.01 Total: 0.24 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -0.86 Total: -5.43 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: -1.19 Total: -42.91 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.08 Total: -11.80 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.84 -9.15 -39.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260079633.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.948 kcal (2) G-P(sol) polarization free energy of solvation -29.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds