Wall clock time and date at job start Mon Mar 30 2020 01:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47443 * 111.00227 * 2 1 4 4 C 1.54312 * 107.23612 * 236.74273 * 3 2 1 5 5 C 1.55142 * 103.17714 * 337.62814 * 4 3 2 6 6 H 1.08996 * 110.99420 * 277.65160 * 5 4 3 7 7 C 1.50700 * 110.99048 * 153.83199 * 5 4 3 8 8 O 1.21280 * 120.00008 * 0.02562 * 7 5 4 9 9 N 1.34775 * 120.00050 * 180.02562 * 7 5 4 10 10 C 1.46929 * 120.63198 * 359.97438 * 9 7 5 11 11 C 1.53194 * 108.77628 * 233.59207 * 10 9 7 12 12 C 1.53033 * 109.31375 * 305.36596 * 11 10 9 13 13 C 1.53042 * 109.54159 * 61.36495 * 12 11 10 14 14 H 1.08998 * 109.49664 * 58.58648 * 13 12 11 15 15 C 1.50696 * 109.50002 * 178.65377 * 13 12 11 16 16 H 1.08001 * 120.00111 * 119.99958 * 15 13 12 17 17 C 1.37882 * 119.99652 * 299.99876 * 15 13 12 18 18 N 1.31509 * 120.00087 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99590 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46895 * 90.00600 * 19 17 15 21 21 H 1.48502 * 109.46689 * 209.99882 * 19 17 15 22 22 H 1.48496 * 109.47474 * 330.00066 * 19 17 15 23 23 C 1.46929 * 120.63244 * 179.72510 * 9 7 5 24 24 C 1.47844 * 110.99982 * 239.15844 * 2 1 3 25 25 H 1.09002 * 109.47062 * 59.87336 * 1 2 3 26 26 H 1.08998 * 109.47146 * 179.86779 * 1 2 3 27 27 H 1.08995 * 109.47111 * 299.87499 * 1 2 3 28 28 H 1.08997 * 109.88254 * 117.33308 * 3 2 1 29 29 H 1.09003 * 109.88840 * 356.15438 * 3 2 1 30 30 H 1.09002 * 110.70596 * 96.10119 * 4 3 2 31 31 H 1.09005 * 110.70742 * 219.16269 * 4 3 2 32 32 H 1.09002 * 109.58514 * 353.37736 * 10 9 7 33 33 H 1.08999 * 109.58704 * 113.65746 * 10 9 7 34 34 H 1.09007 * 109.49540 * 65.31991 * 11 10 9 35 35 H 1.09003 * 109.49649 * 185.41081 * 11 10 9 36 36 H 1.08999 * 109.45857 * 181.39002 * 12 11 10 37 37 H 1.09002 * 109.45940 * 301.34776 * 12 11 10 38 38 H 0.97005 * 120.00142 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.58250 * 246.19825 * 23 9 7 40 40 H 1.09004 * 109.58582 * 6.61628 * 23 9 7 41 41 H 1.08999 * 110.37744 * 265.19940 * 24 2 1 42 42 H 1.09007 * 110.37325 * 27.42750 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9159 1.5137 -1.2324 5 6 3.3089 0.0459 -1.5457 6 1 4.1343 -0.2808 -0.9133 7 6 3.6498 -0.1221 -3.0040 8 8 3.5935 0.8297 -3.7535 9 7 4.0171 -1.3302 -3.4753 10 6 4.0905 -2.4925 -2.5796 11 6 5.4790 -3.1270 -2.7078 12 6 5.7548 -3.4483 -4.1784 13 6 5.7371 -2.1553 -4.9970 14 1 6.4882 -1.4681 -4.6078 15 6 6.0414 -2.4689 -6.4392 16 1 5.3208 -2.2299 -7.2074 17 6 7.2398 -3.0607 -6.7780 18 7 8.1169 -3.3521 -5.8425 19 14 7.6166 -3.4500 -8.5657 20 1 8.2980 -2.2887 -9.1921 21 1 8.5014 -4.6405 -8.6371 22 1 6.3503 -3.7303 -9.2890 23 6 4.3466 -1.5111 -4.8957 24 6 1.9988 -0.7076 -1.1851 25 1 -0.3633 0.5158 -0.8889 26 1 -0.3633 -1.0276 -0.0024 27 1 -0.3633 0.5119 0.8911 28 1 2.5697 1.5539 0.9106 29 1 1.1756 2.0892 -0.0687 30 1 2.3744 1.9547 -2.0694 31 1 3.7986 2.1059 -0.9913 32 1 3.9291 -2.1715 -1.5505 33 1 3.3274 -3.2186 -2.8598 34 1 6.2326 -2.4305 -2.3401 35 1 5.5149 -4.0453 -2.1217 36 1 6.7320 -3.9224 -4.2694 37 1 4.9867 -4.1253 -4.5524 38 1 8.9598 -3.7688 -6.0808 39 1 3.6055 -2.1597 -5.3629 40 1 4.3540 -0.5423 -5.3953 41 1 2.2147 -1.7477 -0.9410 42 1 1.2880 -0.6517 -2.0096 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260079633.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:13 Heat of formation + Delta-G solvation = -57.634718 kcal Electronic energy + Delta-G solvation = -21189.308210 eV Core-core repulsion = 18167.823963 eV Total energy + Delta-G solvation = -3021.484247 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.52893 -39.43845 -38.25050 -35.40888 -33.43235 -32.90298 -31.93085 -30.06211 -27.21178 -26.89696 -25.96112 -23.44245 -23.14495 -21.86301 -21.12892 -19.76128 -18.59436 -18.13165 -17.13016 -16.95369 -16.60037 -15.88521 -15.72888 -15.12533 -14.97589 -14.74852 -14.60689 -14.47759 -14.11598 -14.03998 -13.65068 -13.55642 -12.89593 -12.76973 -12.68574 -12.54676 -12.45104 -12.31136 -12.22719 -11.92031 -11.83247 -11.70468 -11.59114 -11.26937 -10.89831 -10.70839 -10.43959 -9.51925 -9.35037 -8.11480 -6.26856 1.40260 1.41403 1.51261 1.57897 2.05796 2.42952 2.99424 3.15016 3.40091 3.62448 3.71581 4.01425 4.19207 4.23704 4.24748 4.35754 4.38687 4.49739 4.53155 4.54175 4.59423 4.70269 4.79047 4.85492 4.86500 4.90455 4.98120 5.02661 5.06017 5.11518 5.22667 5.28851 5.47505 5.55980 5.60647 5.87159 5.92522 6.03965 6.13062 6.33730 6.53595 6.82481 7.17487 7.41350 8.92095 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.040387 B = 0.004354 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.121274 B = 6429.582313 C = 6688.020267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.536 5.536 3 C 0.046 3.954 4 C -0.123 4.123 5 C -0.114 4.114 6 H 0.125 0.875 7 C 0.512 3.488 8 O -0.595 6.595 9 N -0.604 5.604 10 C 0.108 3.892 11 C -0.128 4.128 12 C -0.106 4.106 13 C 0.041 3.959 14 H -0.014 1.014 15 C -0.540 4.540 16 H 0.051 0.949 17 C 0.018 3.982 18 N -0.912 5.912 19 Si 0.955 3.045 20 H -0.280 1.280 21 H -0.279 1.279 22 H -0.267 1.267 23 C 0.129 3.871 24 C 0.059 3.941 25 H 0.022 0.978 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.038 0.962 38 H 0.262 0.738 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.108 0.892 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.854 2.436 14.347 19.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.261 5.261 3 C -0.082 4.082 4 C -0.162 4.162 5 C -0.135 4.135 6 H 0.143 0.857 7 C 0.301 3.699 8 O -0.477 6.477 9 N -0.334 5.334 10 C -0.014 4.014 11 C -0.166 4.166 12 C -0.144 4.144 13 C 0.022 3.978 14 H 0.004 0.996 15 C -0.578 4.578 16 H 0.070 0.930 17 C -0.181 4.181 18 N -0.552 5.552 19 Si 0.780 3.220 20 H -0.206 1.206 21 H -0.205 1.205 22 H -0.192 1.192 23 C 0.006 3.994 24 C -0.069 4.069 25 H 0.041 0.959 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.130 0.870 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.126 0.874 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.581 2.573 14.446 19.328 hybrid contribution 0.509 0.335 -2.219 2.301 sum -12.072 2.908 12.227 17.427 Atomic orbital electron populations 1.22637 0.86417 1.02958 1.01139 1.63709 1.09195 1.14516 1.38634 1.22909 0.98015 0.89374 0.97856 1.22647 1.00780 0.94455 0.98336 1.22519 1.00892 0.99027 0.91083 0.85732 1.21041 0.76036 0.81793 0.91017 1.90629 1.55802 1.40548 1.60684 1.48365 1.65315 1.09562 1.10176 1.22094 0.97791 0.87009 0.94463 1.21921 0.96321 1.00920 0.97431 1.21425 1.01438 0.98151 0.93392 1.18944 0.90392 0.93511 0.94919 0.99633 1.21447 1.02606 1.40354 0.93410 0.93027 1.25681 0.95898 0.95309 1.01253 1.70005 1.08442 1.42903 1.33805 0.85608 0.78253 0.77665 0.80440 1.20625 1.20463 1.19160 1.21646 0.97636 0.99615 0.80475 1.23183 0.92775 0.99443 0.91512 0.95925 0.90413 0.89777 0.88732 0.91467 0.92343 0.89896 0.86953 0.89760 0.93712 0.89046 0.91929 0.94321 0.92907 0.91955 0.93082 0.87439 0.94151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.12 127.69 1.16 1.41 16 2 N -0.54 -9.90 5.44 -910.71 -4.96 -14.86 16 3 C 0.05 0.82 6.90 86.64 0.60 1.41 16 4 C -0.12 -2.91 6.05 31.77 0.19 -2.71 16 5 C -0.11 -2.85 2.40 -9.99 -0.02 -2.87 16 6 H 0.12 2.75 7.53 -2.39 -0.02 2.73 16 7 C 0.51 18.28 7.08 87.66 0.62 18.90 16 8 O -0.60 -26.46 15.13 -3.03 -0.05 -26.51 16 9 N -0.60 -21.80 2.97 -818.11 -2.43 -24.23 16 10 C 0.11 2.98 5.67 86.36 0.49 3.47 16 11 C -0.13 -4.26 6.08 30.67 0.19 -4.08 16 12 C -0.11 -4.74 4.96 30.62 0.15 -4.59 16 13 C 0.04 2.11 2.26 -11.33 -0.03 2.09 16 14 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 15 C -0.54 -30.15 8.57 25.60 0.22 -29.93 16 16 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 17 C 0.02 0.99 5.30 84.66 0.45 1.44 16 18 N -0.91 -52.36 11.31 21.45 0.24 -52.11 16 19 Si 0.95 43.78 29.54 68.60 2.03 45.80 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 23 C 0.13 5.73 5.68 86.50 0.49 6.22 16 24 C 0.06 1.21 5.54 86.94 0.48 1.70 16 25 H 0.02 0.36 8.11 -2.39 -0.02 0.34 16 26 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 1.07 7.58 -2.39 -0.02 1.05 16 30 H 0.06 1.65 7.39 -2.39 -0.02 1.63 16 31 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.11 2.31 4.61 -2.39 -0.01 2.30 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.06 3.23 6.04 -2.39 -0.01 3.22 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 39 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.05 2.51 7.00 -2.39 -0.02 2.50 16 41 H 0.11 1.84 6.56 -2.39 -0.02 1.83 16 42 H 0.04 0.93 7.68 -2.38 -0.02 0.92 16 Total: -1.00 -67.62 321.30 0.82 -66.80 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.98 Total: 12.66 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 5.00 Total: -7.55 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -7.14 Total: -91.20 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.05 Total: -26.51 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -67.62 0.82 -66.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260079633.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.168 kcal (2) G-P(sol) polarization free energy of solvation -67.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds