Wall clock time and date at job start Mon Mar 30 2020 01:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.47902 * 110.99971 * 2 1 4 4 C 1.53991 * 107.05858 * 214.15451 * 3 2 1 5 5 C 1.54594 * 105.13855 * 1.22997 * 4 3 2 6 6 C 1.48527 * 110.99707 * 242.60543 * 2 1 3 7 7 H 1.09004 * 110.81530 * 41.21999 * 6 2 1 8 8 C 1.50701 * 110.66915 * 278.15555 * 6 2 1 9 9 O 1.21276 * 119.99842 * 346.19682 * 8 6 2 10 10 N 1.34781 * 119.99890 * 166.19092 * 8 6 2 11 11 C 1.46924 * 120.63309 * 359.72325 * 10 8 6 12 12 C 1.52753 * 109.00838 * 233.58051 * 11 10 8 13 13 C 1.53043 * 109.38596 * 305.58674 * 12 11 10 14 14 C 1.50699 * 109.45880 * 181.26226 * 13 12 11 15 15 H 1.07998 * 119.99471 * 245.37911 * 14 13 12 16 16 C 1.37875 * 119.99999 * 65.38527 * 14 13 12 17 17 N 1.31511 * 120.00296 * 9.57370 * 16 14 13 18 18 Si 1.86800 * 119.99609 * 189.57568 * 16 14 13 19 19 H 1.48496 * 109.47264 * 94.98986 * 18 16 14 20 20 H 1.48501 * 109.47158 * 214.98966 * 18 16 14 21 21 H 1.48504 * 109.47635 * 334.99141 * 18 16 14 22 22 C 1.53038 * 109.53671 * 61.23951 * 13 12 11 23 23 C 1.46925 * 120.62980 * 179.97438 * 10 8 6 24 24 H 1.09001 * 109.46756 * 59.86947 * 1 2 3 25 25 H 1.08996 * 109.47041 * 179.87304 * 1 2 3 26 26 H 1.09005 * 109.46764 * 299.86928 * 1 2 3 27 27 H 1.09003 * 109.91091 * 94.80352 * 3 2 1 28 28 H 1.08996 * 109.91556 * 333.51718 * 3 2 1 29 29 H 1.09002 * 110.30746 * 120.14281 * 4 3 2 30 30 H 1.08997 * 110.30941 * 242.21610 * 4 3 2 31 31 H 1.09004 * 110.72687 * 140.31292 * 5 4 3 32 32 H 1.08999 * 110.72428 * 263.59793 * 5 4 3 33 33 H 1.09005 * 109.58579 * 353.41761 * 11 10 8 34 34 H 1.09006 * 109.58872 * 113.83773 * 11 10 8 35 35 H 1.09011 * 109.56469 * 185.55343 * 12 11 10 36 36 H 1.09002 * 109.35972 * 65.50358 * 12 11 10 37 37 H 1.09002 * 109.44788 * 301.22980 * 13 12 11 38 38 H 0.97001 * 119.99603 * 180.02562 * 17 16 14 39 39 H 1.08994 * 109.49682 * 178.68544 * 22 13 12 40 40 H 1.09001 * 109.52159 * 58.60248 * 22 13 12 41 41 H 1.08997 * 109.59456 * 246.16120 * 23 10 8 42 42 H 1.09007 * 109.58749 * 6.59005 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2983 1.3659 -0.8265 5 6 3.4492 -0.0929 -1.3154 6 6 2.0013 -0.6380 -1.2311 7 1 1.4246 -0.3347 -2.1050 8 6 2.0051 -2.1387 -1.0935 9 8 1.8487 -2.6481 -0.0041 10 7 2.1824 -2.9147 -2.1811 11 6 2.3671 -2.3125 -3.5085 12 6 1.3475 -2.9139 -4.4739 13 6 1.4670 -4.4395 -4.4535 14 6 0.4831 -5.0332 -5.4284 15 1 -0.3336 -5.6414 -5.0684 16 6 0.6256 -4.8002 -6.7798 17 7 1.7156 -4.2231 -7.2362 18 14 -0.7298 -5.3041 -7.9624 19 1 -1.6216 -4.1442 -8.2165 20 1 -0.1273 -5.7550 -9.2426 21 1 -1.5180 -6.4136 -7.3683 22 6 1.1655 -4.9576 -3.0454 23 6 2.1892 -4.3792 -2.0628 24 1 -0.3633 0.5159 -0.8888 25 1 -0.3633 -1.0276 -0.0023 26 1 -0.3633 0.5118 0.8912 27 1 2.2123 1.6966 1.0213 28 1 1.2758 2.0561 -0.4570 29 1 3.2137 2.0430 -1.6766 30 1 4.1468 1.6471 -0.2027 31 1 3.8123 -0.1198 -2.3429 32 1 4.1115 -0.6541 -0.6563 33 1 2.2166 -1.2347 -3.4449 34 1 3.3746 -2.5222 -3.8680 35 1 1.5395 -2.5474 -5.4825 36 1 0.3431 -2.6234 -4.1659 37 1 2.4790 -4.7281 -4.7376 38 1 1.8156 -4.0588 -8.1870 39 1 1.2279 -6.0458 -3.0371 40 1 0.1627 -4.6484 -2.7504 41 1 3.1817 -4.7607 -2.3021 42 1 1.9212 -4.6649 -1.0455 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260087056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:30 Heat of formation + Delta-G solvation = -35.378838 kcal Electronic energy + Delta-G solvation = -21359.008990 eV Core-core repulsion = 18338.489831 eV Total energy + Delta-G solvation = -3020.519159 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.19054 -38.20840 -36.55372 -33.51089 -32.26446 -31.40946 -30.33271 -29.12877 -26.20342 -25.63633 -23.42240 -22.48329 -21.65652 -20.97023 -19.59252 -18.30330 -17.24809 -16.27202 -15.96546 -15.55355 -14.76862 -14.54609 -14.40064 -14.14315 -13.69051 -13.27624 -13.12746 -12.86502 -12.64149 -12.46069 -12.31286 -12.04761 -11.67962 -11.52977 -11.41085 -11.38349 -11.14946 -10.93950 -10.76690 -10.65663 -10.40887 -10.21501 -9.67543 -9.33490 -9.10005 -9.01254 -8.40665 -8.37002 -7.99409 -6.08388 -4.09707 2.99504 3.26351 3.32019 3.34368 3.37848 4.07807 4.39795 4.51570 4.54636 4.82345 4.99374 5.07953 5.23206 5.30785 5.36512 5.42514 5.56189 5.58656 5.69384 5.72637 5.81475 5.90011 5.93099 5.97490 6.04400 6.06023 6.16220 6.23190 6.44367 6.61319 6.70970 6.89168 6.93474 7.01297 7.10165 7.17980 7.61770 7.86530 7.92921 7.95315 8.37670 8.65257 8.94026 9.54233 11.00338 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028449 B = 0.004800 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.981127 B = 5832.488135 C = 6039.350460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.498 5.498 3 C 0.036 3.964 4 C -0.129 4.129 5 C -0.111 4.111 6 C 0.045 3.955 7 H 0.077 0.923 8 C 0.521 3.479 9 O -0.537 6.537 10 N -0.601 5.601 11 C 0.104 3.896 12 C -0.119 4.119 13 C 0.047 3.953 14 C -0.515 4.515 15 H 0.055 0.945 16 C 0.064 3.936 17 N -0.889 5.889 18 Si 0.886 3.114 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.122 4.122 23 C 0.113 3.887 24 H 0.027 0.973 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.040 0.960 37 H 0.035 0.965 38 H 0.260 0.740 39 H 0.061 0.939 40 H 0.050 0.950 41 H 0.060 0.940 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.537 10.932 9.331 14.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.222 5.222 3 C -0.092 4.092 4 C -0.167 4.167 5 C -0.149 4.149 6 C -0.067 4.067 7 H 0.094 0.906 8 C 0.308 3.692 9 O -0.413 6.413 10 N -0.335 5.335 11 C -0.019 4.019 12 C -0.157 4.157 13 C 0.029 3.971 14 C -0.553 4.553 15 H 0.073 0.927 16 C -0.137 4.137 17 N -0.528 5.528 18 Si 0.714 3.286 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.161 4.161 23 C -0.010 4.010 24 H 0.045 0.955 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.687 10.426 10.217 14.843 hybrid contribution -1.134 0.258 -1.666 2.032 sum 1.553 10.684 8.552 13.773 Atomic orbital electron populations 1.22526 0.87319 1.02788 1.00412 1.64410 1.08443 1.13940 1.35444 1.22899 0.95853 0.89636 1.00835 1.22396 0.97921 0.96708 0.99708 1.22435 0.94493 0.95648 1.02323 1.22777 0.97705 0.93122 0.93061 0.90551 1.20094 0.76856 0.88202 0.84060 1.90635 1.49530 1.74946 1.26213 1.48200 1.70728 1.07071 1.07503 1.21934 1.00970 0.96525 0.82433 1.21875 0.95647 0.99875 0.98337 1.18640 0.98000 0.90689 0.89794 1.21178 1.11675 1.31347 0.91095 0.92694 1.24943 0.95254 0.95289 0.98217 1.69950 1.25125 1.43698 1.13985 0.86675 0.82496 0.78810 0.80623 1.20763 1.21298 1.19893 1.22007 0.97323 0.99613 0.97121 1.21697 0.99858 0.78657 1.00742 0.95464 0.90879 0.91162 0.90103 0.93645 0.91147 0.90640 0.90021 0.90206 0.91667 0.91750 0.89644 0.94126 0.94688 0.93017 0.92030 0.93124 0.92185 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.30 60.07 0.56 0.79 16 2 N -0.50 -6.95 4.82 -232.20 -1.12 -8.07 16 3 C 0.04 0.38 6.70 -2.76 -0.02 0.36 16 4 C -0.13 -1.23 6.93 -25.38 -0.18 -1.40 16 5 C -0.11 -1.31 6.23 -24.87 -0.15 -1.46 16 6 C 0.04 0.64 1.68 -66.94 -0.11 0.53 16 7 H 0.08 1.06 6.59 -51.93 -0.34 0.72 16 8 C 0.52 9.31 6.76 -10.98 -0.07 9.23 16 9 O -0.54 -11.24 15.98 5.56 0.09 -11.15 16 10 N -0.60 -10.77 2.98 -173.01 -0.52 -11.29 16 11 C 0.10 1.79 6.11 -3.94 -0.02 1.77 16 12 C -0.12 -2.53 5.19 -26.84 -0.14 -2.67 16 13 C 0.05 1.11 1.93 -91.73 -0.18 0.93 16 14 C -0.51 -13.63 8.48 -34.44 -0.29 -13.92 16 15 H 0.05 1.46 7.77 -52.49 -0.41 1.06 16 16 C 0.06 1.72 5.19 -17.82 -0.09 1.63 16 17 N -0.89 -24.36 12.16 55.43 0.67 -23.69 16 18 Si 0.89 20.71 29.55 -169.99 -5.02 15.68 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 C -0.12 -2.51 5.30 -26.59 -0.14 -2.65 16 23 C 0.11 2.08 6.44 -3.69 -0.02 2.05 16 24 H 0.03 0.32 8.01 -51.93 -0.42 -0.10 16 25 H 0.07 1.08 8.00 -51.93 -0.42 0.66 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.43 7.73 -51.93 -0.40 0.03 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.87 7.64 -51.93 -0.40 0.47 16 32 H 0.08 1.03 8.05 -51.93 -0.42 0.61 16 33 H 0.07 0.96 5.09 -51.93 -0.26 0.70 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.09 2.00 6.87 -51.92 -0.36 1.65 16 36 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.03 0.90 8.09 -51.93 -0.42 0.48 16 38 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.08 1.46 7.01 -51.93 -0.36 1.09 16 LS Contribution 325.47 15.07 4.90 4.90 Total: -1.00 -29.68 325.47 -9.00 -38.68 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -7.14 Total: -0.27 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -0.87 Total: -4.80 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: -0.96 Total: -43.04 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.68 -9.00 -38.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260087056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.304 kcal (2) G-P(sol) polarization free energy of solvation -29.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds