Wall clock time and date at job start Mon Mar 30 2020 01:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.47902 * 110.99971 * 2 1 4 4 C 1.53991 * 107.05858 * 214.15451 * 3 2 1 5 5 C 1.54594 * 105.13855 * 1.22997 * 4 3 2 6 6 C 1.48527 * 110.99707 * 242.60543 * 2 1 3 7 7 H 1.09004 * 110.81530 * 41.21999 * 6 2 1 8 8 C 1.50701 * 110.66915 * 278.15555 * 6 2 1 9 9 O 1.21276 * 119.99842 * 346.19682 * 8 6 2 10 10 N 1.34781 * 119.99890 * 166.19092 * 8 6 2 11 11 C 1.46924 * 120.63309 * 359.72325 * 10 8 6 12 12 C 1.52753 * 109.00838 * 233.58051 * 11 10 8 13 13 C 1.53043 * 109.38596 * 305.58674 * 12 11 10 14 14 C 1.50699 * 109.45880 * 181.26226 * 13 12 11 15 15 H 1.07998 * 119.99471 * 245.37911 * 14 13 12 16 16 C 1.37875 * 119.99999 * 65.38527 * 14 13 12 17 17 N 1.31511 * 120.00296 * 9.57370 * 16 14 13 18 18 Si 1.86800 * 119.99609 * 189.57568 * 16 14 13 19 19 H 1.48496 * 109.47264 * 94.98986 * 18 16 14 20 20 H 1.48501 * 109.47158 * 214.98966 * 18 16 14 21 21 H 1.48504 * 109.47635 * 334.99141 * 18 16 14 22 22 C 1.53038 * 109.53671 * 61.23951 * 13 12 11 23 23 C 1.46925 * 120.62980 * 179.97438 * 10 8 6 24 24 H 1.09001 * 109.46756 * 59.86947 * 1 2 3 25 25 H 1.08996 * 109.47041 * 179.87304 * 1 2 3 26 26 H 1.09005 * 109.46764 * 299.86928 * 1 2 3 27 27 H 1.09003 * 109.91091 * 94.80352 * 3 2 1 28 28 H 1.08996 * 109.91556 * 333.51718 * 3 2 1 29 29 H 1.09002 * 110.30746 * 120.14281 * 4 3 2 30 30 H 1.08997 * 110.30941 * 242.21610 * 4 3 2 31 31 H 1.09004 * 110.72687 * 140.31292 * 5 4 3 32 32 H 1.08999 * 110.72428 * 263.59793 * 5 4 3 33 33 H 1.09005 * 109.58579 * 353.41761 * 11 10 8 34 34 H 1.09006 * 109.58872 * 113.83773 * 11 10 8 35 35 H 1.09011 * 109.56469 * 185.55343 * 12 11 10 36 36 H 1.09002 * 109.35972 * 65.50358 * 12 11 10 37 37 H 1.09002 * 109.44788 * 301.22980 * 13 12 11 38 38 H 0.97001 * 119.99603 * 180.02562 * 17 16 14 39 39 H 1.08994 * 109.49682 * 178.68544 * 22 13 12 40 40 H 1.09001 * 109.52159 * 58.60248 * 22 13 12 41 41 H 1.08997 * 109.59456 * 246.16120 * 23 10 8 42 42 H 1.09007 * 109.58749 * 6.59005 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2983 1.3659 -0.8265 5 6 3.4492 -0.0929 -1.3154 6 6 2.0013 -0.6380 -1.2311 7 1 1.4246 -0.3347 -2.1050 8 6 2.0051 -2.1387 -1.0935 9 8 1.8487 -2.6481 -0.0041 10 7 2.1824 -2.9147 -2.1811 11 6 2.3671 -2.3125 -3.5085 12 6 1.3475 -2.9139 -4.4739 13 6 1.4670 -4.4395 -4.4535 14 6 0.4831 -5.0332 -5.4284 15 1 -0.3336 -5.6414 -5.0684 16 6 0.6256 -4.8002 -6.7798 17 7 1.7156 -4.2231 -7.2362 18 14 -0.7298 -5.3041 -7.9624 19 1 -1.6216 -4.1442 -8.2165 20 1 -0.1273 -5.7550 -9.2426 21 1 -1.5180 -6.4136 -7.3683 22 6 1.1655 -4.9576 -3.0454 23 6 2.1892 -4.3792 -2.0628 24 1 -0.3633 0.5159 -0.8888 25 1 -0.3633 -1.0276 -0.0023 26 1 -0.3633 0.5118 0.8912 27 1 2.2123 1.6966 1.0213 28 1 1.2758 2.0561 -0.4570 29 1 3.2137 2.0430 -1.6766 30 1 4.1468 1.6471 -0.2027 31 1 3.8123 -0.1198 -2.3429 32 1 4.1115 -0.6541 -0.6563 33 1 2.2166 -1.2347 -3.4449 34 1 3.3746 -2.5222 -3.8680 35 1 1.5395 -2.5474 -5.4825 36 1 0.3431 -2.6234 -4.1659 37 1 2.4790 -4.7281 -4.7376 38 1 1.8156 -4.0588 -8.1870 39 1 1.2279 -6.0458 -3.0371 40 1 0.1627 -4.6484 -2.7504 41 1 3.1817 -4.7607 -2.3021 42 1 1.9212 -4.6649 -1.0455 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260087056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:29 Heat of formation + Delta-G solvation = -53.814694 kcal Electronic energy + Delta-G solvation = -21359.808428 eV Core-core repulsion = 18338.489831 eV Total energy + Delta-G solvation = -3021.318598 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.48654 -39.41887 -38.09904 -35.31587 -33.41602 -32.90931 -31.93946 -30.26908 -27.95155 -26.62701 -25.01432 -24.05988 -23.00549 -21.81787 -21.13450 -19.73439 -18.72569 -18.11955 -17.12695 -16.79192 -16.47764 -16.00327 -15.61370 -15.25828 -14.87264 -14.73212 -14.59956 -14.54436 -14.09812 -13.89719 -13.46399 -13.25835 -13.19106 -13.00289 -12.77936 -12.54146 -12.44485 -12.36294 -12.19078 -12.08088 -11.97374 -11.54524 -11.49569 -10.98428 -10.91211 -10.62932 -10.40711 -9.54323 -9.39215 -8.12621 -6.20194 1.40122 1.43171 1.51805 1.62419 1.99464 2.44009 3.02630 3.17211 3.47601 3.62495 3.85577 3.94655 4.16577 4.18600 4.26171 4.36171 4.40896 4.43356 4.45506 4.53983 4.56570 4.69302 4.76911 4.85415 4.88603 4.93957 4.95606 4.99859 5.11049 5.17255 5.22864 5.28121 5.35536 5.50183 5.65581 5.80066 5.96443 6.01769 6.02594 6.37839 6.52683 6.89287 7.24101 7.46306 8.95007 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028449 B = 0.004800 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.981127 B = 5832.488135 C = 6039.350460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.523 5.523 3 C 0.034 3.966 4 C -0.122 4.122 5 C -0.109 4.109 6 C 0.046 3.954 7 H 0.085 0.915 8 C 0.519 3.481 9 O -0.572 6.572 10 N -0.604 5.604 11 C 0.115 3.885 12 C -0.109 4.109 13 C 0.045 3.955 14 C -0.537 4.537 15 H 0.045 0.955 16 C 0.023 3.977 17 N -0.911 5.911 18 Si 0.943 3.057 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.274 1.274 22 C -0.112 4.112 23 C 0.118 3.882 24 H 0.039 0.961 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.032 0.968 37 H 0.009 0.991 38 H 0.262 0.738 39 H 0.062 0.938 40 H 0.040 0.960 41 H 0.070 0.930 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.744 12.812 9.356 16.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.248 5.248 3 C -0.093 4.093 4 C -0.159 4.159 5 C -0.148 4.148 6 C -0.066 4.066 7 H 0.102 0.898 8 C 0.307 3.693 9 O -0.451 6.451 10 N -0.337 5.337 11 C -0.007 4.007 12 C -0.148 4.148 13 C 0.026 3.974 14 C -0.575 4.575 15 H 0.064 0.936 16 C -0.176 4.176 17 N -0.550 5.550 18 Si 0.770 3.230 19 H -0.202 1.202 20 H -0.209 1.209 21 H -0.198 1.198 22 C -0.150 4.150 23 C -0.005 4.005 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.028 0.972 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.896 12.320 10.240 16.280 hybrid contribution -1.212 -0.372 -1.641 2.074 sum 1.684 11.948 8.599 14.817 Atomic orbital electron populations 1.22491 0.87130 1.01347 1.01841 1.64370 1.08938 1.16164 1.35352 1.23001 0.96606 0.87905 1.01789 1.22412 0.97819 0.95274 1.00445 1.22479 0.92333 0.96903 1.03076 1.22786 0.99713 0.90341 0.93720 0.89775 1.20799 0.75455 0.89814 0.83218 1.90612 1.51043 1.75957 1.27504 1.48255 1.70700 1.06799 1.07923 1.21833 0.99807 0.97988 0.81038 1.21653 0.96497 0.98360 0.98293 1.18602 0.95757 0.92289 0.90707 1.21503 1.12091 1.31691 0.92229 0.93649 1.25577 0.97041 0.95431 0.99585 1.70035 1.26295 1.44372 1.14326 0.85775 0.80073 0.78526 0.78669 1.20165 1.20911 1.19842 1.21851 0.97405 0.99751 0.96042 1.21569 0.99609 0.79465 0.99849 0.94225 0.93727 0.89532 0.89409 0.92159 0.89148 0.89281 0.88554 0.91594 0.88416 0.91136 0.91823 0.94909 0.97244 0.92882 0.91946 0.94124 0.91156 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.30 127.69 1.19 1.68 16 2 N -0.52 -13.62 4.82 -888.56 -4.29 -17.91 16 3 C 0.03 0.61 6.70 86.45 0.58 1.19 16 4 C -0.12 -1.86 6.93 31.47 0.22 -1.64 16 5 C -0.11 -2.29 6.23 31.80 0.20 -2.09 16 6 C 0.05 1.23 1.68 44.52 0.07 1.30 16 7 H 0.08 2.11 6.59 -2.38 -0.02 2.10 16 8 C 0.52 18.10 6.76 87.66 0.59 18.69 16 9 O -0.57 -23.99 15.98 -3.02 -0.05 -24.04 16 10 N -0.60 -21.16 2.98 -819.66 -2.44 -23.60 16 11 C 0.12 3.83 6.11 86.22 0.53 4.36 16 12 C -0.11 -4.65 5.19 30.53 0.16 -4.49 16 13 C 0.05 2.15 1.93 -11.51 -0.02 2.13 16 14 C -0.54 -28.87 8.48 25.60 0.22 -28.65 16 15 H 0.05 2.46 7.77 -2.91 -0.02 2.44 16 16 C 0.02 1.24 5.19 84.65 0.44 1.68 16 17 N -0.91 -50.19 12.16 21.45 0.26 -49.93 16 18 Si 0.94 42.51 29.55 68.60 2.03 44.53 16 19 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 C -0.11 -4.66 5.30 30.68 0.16 -4.50 16 23 C 0.12 4.33 6.44 86.38 0.56 4.89 16 24 H 0.04 0.84 8.01 -2.39 -0.02 0.82 16 25 H 0.04 1.31 8.00 -2.39 -0.02 1.29 16 26 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 0.92 7.73 -2.39 -0.02 0.90 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.10 1.72 7.64 -2.38 -0.02 1.70 16 32 H 0.07 1.57 8.05 -2.39 -0.02 1.55 16 33 H 0.10 2.62 5.09 -2.38 -0.01 2.61 16 34 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 35 H 0.06 3.00 6.87 -2.38 -0.02 2.98 16 36 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.01 0.49 8.09 -2.39 -0.02 0.47 16 38 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 39 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.08 2.87 7.01 -2.38 -0.02 2.86 16 Total: -1.00 -64.18 325.47 1.38 -62.80 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.98 Total: 13.60 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 4.89 Total: -5.45 kcal Atomic # 7 Polarization: -84.98 SS G_CDS: -6.47 Total: -91.44 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.05 Total: -24.04 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -64.18 1.38 -62.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260087056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.987 kcal (2) G-P(sol) polarization free energy of solvation -64.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds