Wall clock time and date at job start Mon Mar 30 2020 00:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99567 * 2 1 4 4 C 1.50695 * 119.99974 * 179.97438 * 2 1 3 5 5 N 1.46497 * 109.47046 * 95.00271 * 4 2 1 6 6 C 1.46503 * 120.00253 * 270.00056 * 5 4 2 7 7 C 1.53004 * 109.46627 * 269.99763 * 6 5 4 8 8 C 1.34786 * 120.00111 * 89.99674 * 5 4 2 9 9 O 1.21276 * 119.99637 * 0.02562 * 8 5 4 10 10 C 1.50702 * 119.99785 * 180.02562 * 8 5 4 11 11 N 1.46497 * 109.46627 * 180.02562 * 10 8 5 12 12 C 1.36948 * 120.00084 * 269.99705 * 11 10 8 13 13 H 1.07999 * 119.99857 * 140.84298 * 12 11 10 14 14 C 1.38806 * 119.99383 * 320.84777 * 12 11 10 15 15 N 1.31620 * 119.99559 * 156.85788 * 14 12 11 16 16 Si 1.86797 * 120.00569 * 336.85393 * 14 12 11 17 17 H 1.48499 * 109.47120 * 92.10413 * 16 14 12 18 18 H 1.48503 * 109.47126 * 212.11042 * 16 14 12 19 19 H 1.48498 * 109.46953 * 332.10661 * 16 14 12 20 20 C 1.46503 * 120.00371 * 90.00048 * 11 10 8 21 21 C 1.52996 * 117.49936 * 183.97579 * 20 11 10 22 22 C 1.52994 * 117.50031 * 115.35153 * 20 11 10 23 23 H 1.07999 * 120.00272 * 0.02562 * 1 2 3 24 24 H 1.08006 * 119.99755 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46749 * 239.99578 * 3 2 1 26 26 H 1.09002 * 109.47414 * 359.97438 * 3 2 1 27 27 H 1.08996 * 109.47148 * 120.00169 * 3 2 1 28 28 H 1.08992 * 109.47548 * 334.99867 * 4 2 1 29 29 H 1.09007 * 109.47042 * 214.99706 * 4 2 1 30 30 H 1.08997 * 109.46760 * 29.99503 * 6 5 4 31 31 H 1.08998 * 109.47241 * 149.99833 * 6 5 4 32 32 H 1.09004 * 109.46836 * 179.97438 * 7 6 5 33 33 H 1.08994 * 109.47578 * 299.99845 * 7 6 5 34 34 H 1.08998 * 109.47253 * 60.00078 * 7 6 5 35 35 H 1.08990 * 109.47325 * 59.99967 * 10 8 5 36 36 H 1.09000 * 109.47202 * 299.99734 * 10 8 5 37 37 H 0.97006 * 120.00233 * 179.97438 * 15 14 12 38 38 H 1.09001 * 115.54771 * 329.68493 * 20 11 10 39 39 H 1.09001 * 117.50374 * 0.02562 * 21 20 11 40 40 H 1.09001 * 117.49902 * 145.01814 * 21 20 11 41 41 H 1.09003 * 117.50402 * 214.97982 * 22 20 11 42 42 H 1.09001 * 117.49812 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4119 -1.6683 -1.3752 6 6 1.4916 -2.4820 -2.1735 7 6 1.8151 -3.9638 -1.9719 8 6 3.5793 -1.2540 -1.9066 9 8 4.3413 -0.5808 -1.2456 10 6 3.9374 -1.6272 -3.3221 11 7 5.2454 -1.0608 -3.6603 12 6 5.3281 0.1898 -4.2122 13 1 6.1207 0.8602 -3.9142 14 6 4.3931 0.5957 -5.1544 15 7 4.1708 1.8780 -5.3508 16 14 3.4505 -0.6779 -6.1437 17 1 2.1778 -1.0007 -5.4501 18 1 3.1547 -0.1358 -7.4943 19 1 4.2698 -1.9096 -6.2734 20 6 6.4651 -1.8323 -3.4082 21 6 7.8043 -1.1506 -3.6960 22 6 7.2951 -2.2579 -4.6209 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9354 0.0004 25 1 2.6901 1.3629 -0.8900 26 1 1.3551 2.1336 -0.0005 27 1 2.6901 1.3629 0.8899 28 1 1.4387 -2.0852 0.4352 29 1 2.9743 -1.1985 0.5900 30 1 0.4669 -2.2874 -1.8571 31 1 1.6013 -2.2263 -3.2274 32 1 1.1300 -4.5692 -2.5655 33 1 2.8398 -4.1584 -2.2882 34 1 1.7054 -4.2195 -0.9180 35 1 3.1834 -1.2335 -4.0035 36 1 3.9775 -2.7127 -3.4125 37 1 3.5177 2.1618 -6.0095 38 1 6.4209 -2.5187 -2.5626 39 1 7.7779 -0.1280 -4.0725 40 1 8.6414 -1.3884 -3.0396 41 1 7.7973 -3.2242 -4.5731 42 1 6.9335 -1.9644 -5.6064 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264198812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:31 Heat of formation + Delta-G solvation = 40.595708 kcal Electronic energy + Delta-G solvation = -21620.613817 eV Core-core repulsion = 18603.389162 eV Total energy + Delta-G solvation = -3017.224656 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.46981 -37.12903 -35.94440 -34.55707 -33.33801 -31.28603 -30.23548 -27.77206 -26.92145 -25.38854 -23.86390 -22.97857 -21.46954 -19.81174 -19.26774 -18.02011 -16.79474 -16.56160 -15.83803 -15.29312 -15.16767 -14.90093 -14.00412 -13.78996 -13.62820 -13.58518 -13.14119 -12.79919 -12.61719 -12.33901 -12.26092 -11.92105 -11.83741 -11.42849 -11.31346 -11.15781 -11.06356 -10.91603 -10.79796 -10.46826 -10.10950 -10.05550 -9.56143 -9.42228 -9.16366 -8.82364 -8.51980 -8.23526 -6.74416 -6.04705 -3.46185 2.28405 3.16066 3.35370 3.42543 3.49026 3.59220 4.43141 4.74808 4.85888 4.97329 5.03056 5.06067 5.20830 5.32477 5.38398 5.49575 5.68603 5.76632 5.82759 5.83556 5.87489 5.94149 5.97960 6.01311 6.04438 6.10248 6.13741 6.21656 6.27776 6.44885 6.45585 6.51973 6.77066 6.92140 6.95334 7.08279 7.15368 7.85012 8.03084 8.40816 8.85578 9.03977 9.64117 10.02938 11.10188 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.016588 B = 0.007599 C = 0.007173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.522086 B = 3683.628244 C = 3902.446224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 C -0.117 4.117 4 C 0.149 3.851 5 N -0.622 5.622 6 C 0.105 3.895 7 C -0.170 4.170 8 C 0.490 3.510 9 O -0.511 6.511 10 C 0.121 3.879 11 N -0.548 5.548 12 C -0.259 4.259 13 H 0.083 0.917 14 C 0.038 3.962 15 N -0.890 5.890 16 Si 0.863 3.137 17 H -0.284 1.284 18 H -0.296 1.296 19 H -0.263 1.263 20 C 0.125 3.875 21 C -0.184 4.184 22 C -0.222 4.222 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.264 0.736 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.539 -10.314 7.485 14.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.125 4.125 3 C -0.174 4.174 4 C 0.026 3.974 5 N -0.359 5.359 6 C -0.019 4.019 7 C -0.229 4.229 8 C 0.276 3.724 9 O -0.384 6.384 10 C -0.009 4.009 11 N -0.265 5.265 12 C -0.388 4.388 13 H 0.101 0.899 14 C -0.163 4.163 15 N -0.530 5.530 16 Si 0.692 3.308 17 H -0.213 1.213 18 H -0.224 1.224 19 H -0.187 1.187 20 C 0.017 3.983 21 C -0.223 4.223 22 C -0.262 4.262 23 H 0.113 0.887 24 H 0.110 0.890 25 H 0.098 0.902 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.149 -9.768 7.716 13.884 hybrid contribution -0.848 -0.540 -0.690 1.219 sum -6.997 -10.307 7.026 14.303 Atomic orbital electron populations 1.23624 0.95054 1.01341 1.03853 1.22262 0.95508 0.96910 0.97837 1.20846 0.99925 0.93262 1.03330 1.20318 0.99614 0.92826 0.84678 1.48413 1.20230 1.53892 1.13372 1.21481 0.93580 0.90313 0.96499 1.22225 1.02399 0.96287 1.01941 1.22786 0.79695 0.79022 0.90880 1.90611 1.49557 1.36348 1.61853 1.21424 0.90466 0.97734 0.91294 1.43247 0.98276 1.16435 1.68533 1.18719 1.15062 0.88313 1.16691 0.89914 1.25503 0.98078 0.95381 0.97371 1.69891 1.34281 1.14101 1.34745 0.87178 0.79491 0.83663 0.80482 1.21278 1.22397 1.18714 1.21047 0.85037 0.96925 0.95321 1.23035 0.96966 0.99013 1.03249 1.23394 1.07268 0.97565 0.98011 0.88695 0.88961 0.90184 0.92806 0.91832 0.90915 0.89712 0.90867 0.90414 0.91765 0.92151 0.92552 0.89787 0.91247 0.92612 0.89239 0.87814 0.90465 0.90727 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.56 13.90 29.01 0.40 -2.16 16 2 C -0.12 -1.85 5.63 -101.07 -0.57 -2.42 16 3 C -0.12 -1.94 10.08 36.01 0.36 -1.58 16 4 C 0.15 2.18 5.57 -5.20 -0.03 2.15 16 5 N -0.62 -10.28 2.46 -175.06 -0.43 -10.71 16 6 C 0.10 1.40 5.93 -4.04 -0.02 1.38 16 7 C -0.17 -1.84 10.24 37.16 0.38 -1.46 16 8 C 0.49 10.23 7.74 -10.98 -0.09 10.15 16 9 O -0.51 -12.43 15.37 5.56 0.09 -12.35 16 10 C 0.12 2.59 3.59 -5.19 -0.02 2.57 16 11 N -0.55 -13.25 1.87 -167.03 -0.31 -13.56 16 12 C -0.26 -7.28 8.93 -15.06 -0.13 -7.41 16 13 H 0.08 2.56 6.86 -52.49 -0.36 2.20 16 14 C 0.04 1.07 5.28 -17.43 -0.09 0.98 16 15 N -0.89 -26.99 13.97 55.49 0.78 -26.21 16 16 Si 0.86 21.11 25.31 -169.99 -4.30 16.81 16 17 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 18 H -0.30 -7.42 7.11 56.52 0.40 -7.01 16 19 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 20 C 0.12 2.64 6.57 -67.93 -0.45 2.20 16 21 C -0.18 -3.70 9.80 -26.73 -0.26 -3.96 16 22 C -0.22 -4.27 10.35 -26.74 -0.28 -4.55 16 23 H 0.09 1.15 7.83 -52.49 -0.41 0.74 16 24 H 0.09 1.01 7.99 -52.48 -0.42 0.59 16 25 H 0.08 1.67 7.53 -51.93 -0.39 1.28 16 26 H 0.05 0.80 7.78 -51.93 -0.40 0.39 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 0.85 7.92 -51.93 -0.41 0.44 16 29 H 0.08 1.36 7.42 -51.93 -0.39 0.97 16 30 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 31 H 0.08 1.15 6.44 -51.93 -0.33 0.81 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.71 7.22 -51.93 -0.38 0.34 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.92 2.72 -51.93 -0.14 1.78 16 36 H 0.07 1.28 7.12 -51.93 -0.37 0.91 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 39 H 0.10 2.33 6.44 -51.93 -0.33 2.00 16 40 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 LS Contribution 339.97 15.07 5.12 5.12 Total: -1.00 -31.85 339.97 -6.73 -38.58 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.88 Total: 6.43 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -0.79 Total: -4.11 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.03 Total: -50.49 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.09 Total: -12.35 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.30 Total: 16.81 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.85 -6.73 -38.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264198812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.179 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds