Wall clock time and date at job start Mon Mar 30 2020 00:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99567 * 2 1 4 4 C 1.50695 * 119.99974 * 179.97438 * 2 1 3 5 5 N 1.46497 * 109.47046 * 95.00271 * 4 2 1 6 6 C 1.46503 * 120.00253 * 270.00056 * 5 4 2 7 7 C 1.53004 * 109.46627 * 269.99763 * 6 5 4 8 8 C 1.34786 * 120.00111 * 89.99674 * 5 4 2 9 9 O 1.21276 * 119.99637 * 0.02562 * 8 5 4 10 10 C 1.50702 * 119.99785 * 180.02562 * 8 5 4 11 11 N 1.46497 * 109.46627 * 180.02562 * 10 8 5 12 12 C 1.36948 * 120.00084 * 269.99705 * 11 10 8 13 13 H 1.07999 * 119.99857 * 140.84298 * 12 11 10 14 14 C 1.38806 * 119.99383 * 320.84777 * 12 11 10 15 15 N 1.31620 * 119.99559 * 156.85788 * 14 12 11 16 16 Si 1.86797 * 120.00569 * 336.85393 * 14 12 11 17 17 H 1.48499 * 109.47120 * 92.10413 * 16 14 12 18 18 H 1.48503 * 109.47126 * 212.11042 * 16 14 12 19 19 H 1.48498 * 109.46953 * 332.10661 * 16 14 12 20 20 C 1.46503 * 120.00371 * 90.00048 * 11 10 8 21 21 C 1.52996 * 117.49936 * 183.97579 * 20 11 10 22 22 C 1.52994 * 117.50031 * 115.35153 * 20 11 10 23 23 H 1.07999 * 120.00272 * 0.02562 * 1 2 3 24 24 H 1.08006 * 119.99755 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46749 * 239.99578 * 3 2 1 26 26 H 1.09002 * 109.47414 * 359.97438 * 3 2 1 27 27 H 1.08996 * 109.47148 * 120.00169 * 3 2 1 28 28 H 1.08992 * 109.47548 * 334.99867 * 4 2 1 29 29 H 1.09007 * 109.47042 * 214.99706 * 4 2 1 30 30 H 1.08997 * 109.46760 * 29.99503 * 6 5 4 31 31 H 1.08998 * 109.47241 * 149.99833 * 6 5 4 32 32 H 1.09004 * 109.46836 * 179.97438 * 7 6 5 33 33 H 1.08994 * 109.47578 * 299.99845 * 7 6 5 34 34 H 1.08998 * 109.47253 * 60.00078 * 7 6 5 35 35 H 1.08990 * 109.47325 * 59.99967 * 10 8 5 36 36 H 1.09000 * 109.47202 * 299.99734 * 10 8 5 37 37 H 0.97006 * 120.00233 * 179.97438 * 15 14 12 38 38 H 1.09001 * 115.54771 * 329.68493 * 20 11 10 39 39 H 1.09001 * 117.50374 * 0.02562 * 21 20 11 40 40 H 1.09001 * 117.49902 * 145.01814 * 21 20 11 41 41 H 1.09003 * 117.50402 * 214.97982 * 22 20 11 42 42 H 1.09001 * 117.49812 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4119 -1.6683 -1.3752 6 6 1.4916 -2.4820 -2.1735 7 6 1.8151 -3.9638 -1.9719 8 6 3.5793 -1.2540 -1.9066 9 8 4.3413 -0.5808 -1.2456 10 6 3.9374 -1.6272 -3.3221 11 7 5.2454 -1.0608 -3.6603 12 6 5.3281 0.1898 -4.2122 13 1 6.1207 0.8602 -3.9142 14 6 4.3931 0.5957 -5.1544 15 7 4.1708 1.8780 -5.3508 16 14 3.4505 -0.6779 -6.1437 17 1 2.1778 -1.0007 -5.4501 18 1 3.1547 -0.1358 -7.4943 19 1 4.2698 -1.9096 -6.2734 20 6 6.4651 -1.8323 -3.4082 21 6 7.8043 -1.1506 -3.6960 22 6 7.2951 -2.2579 -4.6209 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9354 0.0004 25 1 2.6901 1.3629 -0.8900 26 1 1.3551 2.1336 -0.0005 27 1 2.6901 1.3629 0.8899 28 1 1.4387 -2.0852 0.4352 29 1 2.9743 -1.1985 0.5900 30 1 0.4669 -2.2874 -1.8571 31 1 1.6013 -2.2263 -3.2274 32 1 1.1300 -4.5692 -2.5655 33 1 2.8398 -4.1584 -2.2882 34 1 1.7054 -4.2195 -0.9180 35 1 3.1834 -1.2335 -4.0035 36 1 3.9775 -2.7127 -3.4125 37 1 3.5177 2.1618 -6.0095 38 1 6.4209 -2.5187 -2.5626 39 1 7.7779 -0.1280 -4.0725 40 1 8.6414 -1.3884 -3.0396 41 1 7.7973 -3.2242 -4.5731 42 1 6.9335 -1.9644 -5.6064 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264198812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:31 Heat of formation + Delta-G solvation = 21.053506 kcal Electronic energy + Delta-G solvation = -21621.461231 eV Core-core repulsion = 18603.389162 eV Total energy + Delta-G solvation = -3018.072069 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.95393 -38.77458 -37.38015 -35.78796 -35.18428 -33.29557 -31.30592 -29.38944 -28.21172 -26.89276 -25.64141 -24.11012 -23.07113 -21.55509 -20.75272 -19.28267 -18.52590 -18.14622 -17.49650 -16.90620 -16.71753 -16.32995 -15.53559 -15.34964 -14.82547 -14.74248 -14.63051 -14.46419 -14.11908 -14.03989 -13.80262 -13.41993 -13.03169 -12.81265 -12.69458 -12.59525 -12.45995 -12.18737 -12.16101 -12.00149 -11.89551 -11.82033 -11.50553 -11.03724 -10.72606 -10.59245 -10.07752 -9.54960 -8.66035 -8.22750 -5.63266 1.16554 1.21521 1.38406 1.50837 1.86963 2.28741 2.37771 2.95511 3.16117 3.31887 3.76879 3.91884 4.03604 4.08282 4.23385 4.26188 4.33803 4.40416 4.43324 4.52179 4.59087 4.61379 4.66673 4.67819 4.77590 4.91289 4.94409 4.96473 5.00813 5.04005 5.08367 5.27971 5.39944 5.52242 5.64794 5.71540 5.89646 5.93344 6.18917 6.49484 6.90970 7.41353 7.59270 7.96364 8.96853 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.016588 B = 0.007599 C = 0.007173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.522086 B = 3683.628244 C = 3902.446224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.160 4.160 3 C -0.111 4.111 4 C 0.151 3.849 5 N -0.614 5.614 6 C 0.095 3.905 7 C -0.163 4.163 8 C 0.486 3.514 9 O -0.561 6.561 10 C 0.118 3.882 11 N -0.563 5.563 12 C -0.250 4.250 13 H 0.029 0.971 14 C -0.022 4.022 15 N -0.946 5.946 16 Si 0.934 3.066 17 H -0.257 1.257 18 H -0.304 1.304 19 H -0.247 1.247 20 C 0.104 3.896 21 C -0.192 4.192 22 C -0.195 4.195 23 H 0.102 0.898 24 H 0.124 0.876 25 H 0.025 0.975 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.115 0.885 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.264 0.736 38 H 0.113 0.887 39 H 0.065 0.935 40 H 0.108 0.892 41 H 0.117 0.883 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.015 -14.258 8.030 18.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C -0.167 4.167 4 C 0.028 3.972 5 N -0.349 5.349 6 C -0.027 4.027 7 C -0.221 4.221 8 C 0.272 3.728 9 O -0.438 6.438 10 C -0.011 4.011 11 N -0.281 5.281 12 C -0.380 4.380 13 H 0.047 0.953 14 C -0.218 4.218 15 N -0.589 5.589 16 Si 0.760 3.240 17 H -0.183 1.183 18 H -0.233 1.233 19 H -0.170 1.170 20 C -0.003 4.003 21 C -0.230 4.230 22 C -0.235 4.235 23 H 0.120 0.880 24 H 0.142 0.858 25 H 0.044 0.956 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.133 0.867 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.124 0.876 37 H 0.073 0.927 38 H 0.130 0.870 39 H 0.084 0.916 40 H 0.126 0.874 41 H 0.135 0.865 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.664 -13.780 8.285 18.265 hybrid contribution -0.104 0.740 -0.726 1.042 sum -8.768 -13.041 7.559 17.438 Atomic orbital electron populations 1.23923 0.93983 1.03199 0.99221 1.22155 0.96384 0.95823 1.01751 1.20728 0.99715 0.95656 1.00649 1.20444 0.99404 0.94067 0.83240 1.48366 1.19120 1.53014 1.14378 1.21804 0.94133 0.91451 0.95313 1.22168 1.02339 0.94331 1.03270 1.22548 0.80840 0.78752 0.90623 1.90595 1.51635 1.38657 1.62920 1.21484 0.88707 0.99468 0.91394 1.43286 1.00341 1.15498 1.68974 1.18426 1.13513 0.89376 1.16702 0.95283 1.26177 0.99887 0.97357 0.98426 1.70049 1.36239 1.16624 1.35997 0.86017 0.79284 0.80840 0.77843 1.18339 1.23254 1.17026 1.21344 0.84168 0.97602 0.97195 1.23005 0.97906 0.97586 1.04528 1.23358 1.05577 0.98715 0.95836 0.87994 0.85815 0.95623 0.91472 0.92033 0.86700 0.91970 0.88156 0.91809 0.89234 0.93292 0.91327 0.91107 0.87600 0.92749 0.86983 0.91647 0.87394 0.86468 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.58 13.90 67.78 0.94 -2.64 16 2 C -0.16 -4.53 5.63 -16.49 -0.09 -4.62 16 3 C -0.11 -3.81 10.08 71.24 0.72 -3.09 16 4 C 0.15 4.12 5.57 85.63 0.48 4.59 16 5 N -0.61 -19.14 2.46 -826.15 -2.03 -21.17 16 6 C 0.10 2.17 5.93 86.38 0.51 2.68 16 7 C -0.16 -2.76 10.24 71.98 0.74 -2.03 16 8 C 0.49 20.31 7.74 87.66 0.68 20.99 16 9 O -0.56 -28.49 15.37 -3.02 -0.05 -28.53 16 10 C 0.12 4.97 3.59 85.63 0.31 5.28 16 11 N -0.56 -27.62 1.87 -682.36 -1.27 -28.90 16 12 C -0.25 -14.84 8.93 84.03 0.75 -14.09 16 13 H 0.03 1.99 6.86 -2.91 -0.02 1.97 16 14 C -0.02 -1.31 5.28 84.86 0.45 -0.86 16 15 N -0.95 -60.60 13.97 21.65 0.30 -60.30 16 16 Si 0.93 44.18 25.31 68.60 1.74 45.91 16 17 H -0.26 -10.89 6.52 99.48 0.65 -10.24 16 18 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 19 H -0.25 -10.93 7.11 99.48 0.71 -10.23 16 20 C 0.10 4.33 6.57 44.99 0.30 4.63 16 21 C -0.19 -7.78 9.80 30.59 0.30 -7.48 16 22 C -0.19 -7.15 10.35 30.59 0.32 -6.83 16 23 H 0.10 2.09 7.83 -2.91 -0.02 2.07 16 24 H 0.12 1.94 7.99 -2.91 -0.02 1.92 16 25 H 0.02 1.13 7.53 -2.39 -0.02 1.12 16 26 H 0.07 2.02 7.78 -2.39 -0.02 2.00 16 27 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.11 2.16 7.92 -2.39 -0.02 2.14 16 29 H 0.06 1.99 7.42 -2.38 -0.02 1.97 16 30 H 0.10 1.76 8.07 -2.39 -0.02 1.75 16 31 H 0.06 1.66 6.44 -2.39 -0.02 1.64 16 32 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.05 0.95 7.22 -2.39 -0.02 0.94 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 3.16 2.72 -2.39 -0.01 3.15 16 36 H 0.11 3.60 7.12 -2.39 -0.02 3.58 16 37 H 0.26 15.86 8.31 -92.70 -0.77 15.09 16 38 H 0.11 4.14 8.14 -2.39 -0.02 4.12 16 39 H 0.06 3.16 6.44 -2.39 -0.02 3.14 16 40 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 41 H 0.12 3.33 8.14 -2.39 -0.02 3.32 16 42 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -76.48 339.97 6.01 -70.48 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.93 Total: 25.97 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 6.39 Total: -3.47 kcal Atomic # 7 Polarization: -107.36 SS G_CDS: -3.00 Total: -110.36 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.05 Total: -28.53 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.74 Total: 45.91 kcal Total: -76.48 6.01 -70.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264198812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.530 kcal (2) G-P(sol) polarization free energy of solvation -76.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds