Wall clock time and date at job start Mon Mar 30 2020 01:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 110.99552 * 2 1 4 4 C 1.46891 * 111.00193 * 123.95419 * 2 1 3 5 5 C 1.50697 * 109.47243 * 170.00095 * 4 2 1 6 6 C 1.32999 * 120.00291 * 125.00136 * 5 4 2 7 7 C 1.47095 * 120.00200 * 180.02562 * 6 5 4 8 8 O 1.21616 * 120.00010 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99891 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99848 * 179.97438 * 9 7 6 11 11 C 1.50704 * 109.46835 * 270.00022 * 10 9 7 12 12 H 1.08001 * 119.99793 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99943 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99771 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00044 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47187 * 89.99872 * 15 13 11 17 17 H 1.48502 * 109.47147 * 209.99653 * 15 13 11 18 18 H 1.48499 * 109.47353 * 330.00044 * 15 13 11 19 19 C 1.46495 * 120.00190 * 359.97438 * 9 7 6 20 20 C 1.52996 * 109.47343 * 89.99786 * 19 9 7 21 21 C 1.53002 * 117.49888 * 116.25574 * 20 19 9 22 22 C 1.53000 * 117.50107 * 184.91336 * 20 19 9 23 23 H 1.08997 * 109.47188 * 296.03813 * 1 2 3 24 24 H 1.08994 * 109.47456 * 56.04900 * 1 2 3 25 25 H 1.09010 * 109.47076 * 176.04675 * 1 2 3 26 26 H 1.09000 * 109.47434 * 183.95513 * 3 2 1 27 27 H 1.08999 * 109.47460 * 303.95381 * 3 2 1 28 28 H 1.09006 * 109.47461 * 63.95649 * 3 2 1 29 29 H 1.09008 * 109.47447 * 50.00240 * 4 2 1 30 30 H 1.09001 * 109.47517 * 290.00378 * 4 2 1 31 31 H 1.08003 * 120.00267 * 305.00429 * 5 4 2 32 32 H 1.07997 * 119.99330 * 359.97438 * 6 5 4 33 33 H 1.08997 * 109.47257 * 29.99742 * 10 9 7 34 34 H 1.08997 * 109.47145 * 150.00052 * 10 9 7 35 35 H 0.97000 * 119.99567 * 180.02562 * 14 13 11 36 36 H 1.09002 * 109.47043 * 329.99683 * 19 9 7 37 37 H 1.09004 * 109.47109 * 210.00237 * 19 9 7 38 38 H 1.09002 * 115.54951 * 330.58548 * 20 19 9 39 39 H 1.09000 * 117.49996 * 215.00804 * 21 20 19 40 40 H 1.08999 * 117.49664 * 0.02562 * 21 20 19 41 41 H 1.09008 * 117.49673 * 359.97438 * 22 20 19 42 42 H 1.08999 * 117.49959 * 144.99502 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7659 1.1375 5 6 3.4817 -0.9524 0.9728 6 6 4.3114 -0.5677 1.9385 7 6 5.7622 -0.7492 1.7774 8 8 6.2030 -1.2515 0.7614 9 7 6.6029 -0.3588 2.7559 10 6 8.0478 -0.5401 2.5957 11 6 8.4477 -1.8889 3.1361 12 1 7.7004 -2.5452 3.5571 13 6 9.7678 -2.2847 3.0939 14 7 10.6779 -1.4852 2.5817 15 14 10.2637 -3.9561 3.7644 16 1 10.1843 -4.9677 2.6802 17 1 11.6551 -3.8902 4.2789 18 1 9.3458 -4.3393 4.8671 19 6 6.0718 0.2467 3.9796 20 6 5.7900 -0.8486 5.0099 21 6 6.5995 -0.8226 6.3080 22 6 5.1200 -0.4303 6.3203 23 1 -0.3633 0.4511 0.9233 24 1 -0.3634 0.5739 -0.8524 25 1 -0.3634 -1.0253 -0.0709 26 1 3.0826 1.3434 -0.0709 27 1 1.5897 1.9163 -0.8524 28 1 1.7043 1.8724 0.9233 29 1 1.5090 -1.7407 1.1756 30 1 1.7975 -0.2248 2.0628 31 1 3.8733 -1.3984 0.0704 32 1 3.9198 -0.1213 2.8405 33 1 8.3064 -0.4811 1.5385 34 1 8.5749 0.2414 3.1429 35 1 11.6065 -1.7638 2.5517 36 1 5.1474 0.7770 3.7509 37 1 6.8020 0.9475 4.3846 38 1 5.5280 -1.8238 4.5996 39 1 6.8702 -1.7807 6.7516 40 1 7.3326 -0.0249 6.4280 41 1 4.8804 0.6253 6.4485 42 1 4.4172 -1.1304 6.7720 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265606218.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:44 Heat of formation + Delta-G solvation = 15.361189 kcal Electronic energy + Delta-G solvation = -20419.589177 eV Core-core repulsion = 17401.270271 eV Total energy + Delta-G solvation = -3018.318906 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.17458 -37.74601 -36.97736 -34.34520 -33.11870 -32.40056 -28.35246 -27.72005 -27.13093 -25.89633 -23.49220 -22.03140 -22.01388 -20.57710 -20.01399 -18.21339 -16.77042 -16.41399 -15.76722 -15.52082 -15.21448 -14.77021 -14.69782 -14.31358 -14.22095 -13.36501 -12.99158 -12.81054 -12.54630 -12.30511 -12.16350 -11.97151 -11.87495 -11.77069 -11.39344 -11.28238 -11.18492 -11.14439 -10.87835 -10.57921 -10.25205 -9.92885 -9.56508 -9.51420 -9.17615 -8.89693 -8.56136 -8.37178 -7.61943 -5.98302 -4.01136 1.75262 3.34203 3.40302 3.42263 3.78569 3.87543 4.14973 4.23860 4.49878 4.82169 4.96505 5.05569 5.09925 5.16901 5.22434 5.26966 5.36250 5.37232 5.40718 5.49589 5.55042 5.62898 5.70601 5.81683 5.84754 5.85555 5.91933 6.08296 6.28585 6.43062 6.48518 6.60771 6.66992 6.82295 6.89895 7.15894 7.49420 7.60953 7.98660 8.30392 8.47274 8.97141 9.15759 9.62868 11.10195 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019957 B = 0.004810 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.664866 B = 5819.620953 C = 6555.463303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.545 5.545 3 C 0.022 3.978 4 C 0.080 3.920 5 C -0.080 4.080 6 C -0.198 4.198 7 C 0.535 3.465 8 O -0.543 6.543 9 N -0.590 5.590 10 C 0.246 3.754 11 C -0.514 4.514 12 H 0.058 0.942 13 C 0.060 3.940 14 N -0.897 5.897 15 Si 0.895 3.105 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.275 1.275 19 C 0.146 3.854 20 C -0.153 4.153 21 C -0.163 4.163 22 C -0.191 4.191 23 H 0.024 0.976 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.025 0.975 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.131 0.869 32 H 0.121 0.879 33 H 0.043 0.957 34 H 0.030 0.970 35 H 0.262 0.738 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.233 5.777 2.916 19.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.126 4.126 4 C -0.047 4.047 5 C -0.100 4.100 6 C -0.220 4.220 7 C 0.323 3.677 8 O -0.422 6.422 9 N -0.320 5.320 10 C 0.127 3.873 11 C -0.553 4.553 12 H 0.076 0.924 13 C -0.142 4.142 14 N -0.537 5.537 15 Si 0.723 3.277 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.200 1.200 19 C 0.022 3.978 20 C -0.173 4.173 21 C -0.200 4.200 22 C -0.229 4.229 23 H 0.043 0.957 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.044 0.956 29 H 0.107 0.893 30 H 0.060 0.940 31 H 0.148 0.852 32 H 0.138 0.862 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.122 0.878 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.604 5.319 1.916 18.490 hybrid contribution 0.149 -0.612 1.351 1.491 sum -17.455 4.707 3.267 18.371 Atomic orbital electron populations 1.22391 0.87201 1.02324 1.00467 1.61930 1.07705 1.14331 1.42877 1.22437 1.01667 0.88263 1.00248 1.21278 0.93042 0.98808 0.91608 1.23478 0.93366 0.94433 0.98752 1.22988 0.94126 1.04449 1.00437 1.18371 0.86383 0.79181 0.83741 1.90759 1.78400 1.43905 1.29124 1.48114 1.09521 1.59132 1.15265 1.19296 0.72651 0.96766 0.98552 1.21397 0.92990 1.01620 1.39290 0.92400 1.24910 0.96455 0.97257 0.95531 1.69935 1.01737 1.36382 1.45655 0.86550 0.77568 0.84465 0.79145 1.20658 1.21260 1.19995 1.21021 0.98496 0.93467 0.84854 1.22758 1.04078 1.01066 0.89363 1.22884 0.93037 1.02911 1.01173 1.22977 0.96399 1.01340 1.02191 0.95695 0.91282 0.91273 0.90691 0.91417 0.95603 0.89349 0.94003 0.85150 0.86169 0.93890 0.95165 0.92862 0.91314 0.90647 0.87827 0.89232 0.88775 0.89243 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.57 60.06 0.57 0.78 16 2 N -0.54 -5.94 5.01 -252.73 -1.27 -7.21 16 3 C 0.02 0.23 9.37 60.06 0.56 0.79 16 4 C 0.08 0.88 5.41 -4.98 -0.03 0.86 16 5 C -0.08 -1.16 8.20 -36.13 -0.30 -1.45 16 6 C -0.20 -3.14 8.82 -37.81 -0.33 -3.47 16 7 C 0.53 11.49 7.62 -12.67 -0.10 11.39 16 8 O -0.54 -14.12 15.80 5.26 0.08 -14.03 16 9 N -0.59 -12.66 2.46 -176.46 -0.43 -13.10 16 10 C 0.25 6.50 5.20 -5.19 -0.03 6.47 16 11 C -0.51 -14.57 9.39 -34.44 -0.32 -14.90 16 12 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 15 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 16 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 19 C 0.15 2.41 5.45 -4.05 -0.02 2.39 16 20 C -0.15 -2.44 6.01 -90.62 -0.54 -2.99 16 21 C -0.16 -2.49 10.18 -26.69 -0.27 -2.76 16 22 C -0.19 -2.39 10.25 -26.70 -0.27 -2.66 16 23 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 24 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 25 H 0.07 0.52 8.12 -51.92 -0.42 0.09 16 26 H 0.07 0.88 7.29 -51.93 -0.38 0.51 16 27 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 28 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.88 8.06 -51.92 -0.42 0.46 16 30 H 0.04 0.42 7.80 -51.93 -0.40 0.02 16 31 H 0.13 2.17 7.49 -52.48 -0.39 1.78 16 32 H 0.12 1.58 6.04 -52.49 -0.32 1.26 16 33 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 34 H 0.03 0.81 7.89 -51.93 -0.41 0.40 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.07 0.92 6.10 -51.93 -0.32 0.61 16 37 H 0.08 1.22 7.63 -51.93 -0.40 0.83 16 38 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 39 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 40 H 0.09 1.43 8.03 -51.93 -0.42 1.01 16 41 H 0.09 0.97 8.14 -51.92 -0.42 0.54 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 351.42 15.07 5.30 5.30 Total: -1.00 -32.88 351.42 -8.96 -41.85 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -7.18 Total: 0.17 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -1.18 Total: -3.94 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -0.96 Total: -46.48 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.08 Total: -14.03 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.88 -8.96 -41.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265606218.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.209 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds