Wall clock time and date at job start Mon Mar 30 2020 01:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 110.99552 * 2 1 4 4 C 1.46891 * 111.00193 * 123.95419 * 2 1 3 5 5 C 1.50697 * 109.47243 * 170.00095 * 4 2 1 6 6 C 1.32999 * 120.00291 * 125.00136 * 5 4 2 7 7 C 1.47095 * 120.00200 * 180.02562 * 6 5 4 8 8 O 1.21616 * 120.00010 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99891 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99848 * 179.97438 * 9 7 6 11 11 C 1.50704 * 109.46835 * 270.00022 * 10 9 7 12 12 H 1.08001 * 119.99793 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99943 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99771 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00044 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47187 * 89.99872 * 15 13 11 17 17 H 1.48502 * 109.47147 * 209.99653 * 15 13 11 18 18 H 1.48499 * 109.47353 * 330.00044 * 15 13 11 19 19 C 1.46495 * 120.00190 * 359.97438 * 9 7 6 20 20 C 1.52996 * 109.47343 * 89.99786 * 19 9 7 21 21 C 1.53002 * 117.49888 * 116.25574 * 20 19 9 22 22 C 1.53000 * 117.50107 * 184.91336 * 20 19 9 23 23 H 1.08997 * 109.47188 * 296.03813 * 1 2 3 24 24 H 1.08994 * 109.47456 * 56.04900 * 1 2 3 25 25 H 1.09010 * 109.47076 * 176.04675 * 1 2 3 26 26 H 1.09000 * 109.47434 * 183.95513 * 3 2 1 27 27 H 1.08999 * 109.47460 * 303.95381 * 3 2 1 28 28 H 1.09006 * 109.47461 * 63.95649 * 3 2 1 29 29 H 1.09008 * 109.47447 * 50.00240 * 4 2 1 30 30 H 1.09001 * 109.47517 * 290.00378 * 4 2 1 31 31 H 1.08003 * 120.00267 * 305.00429 * 5 4 2 32 32 H 1.07997 * 119.99330 * 359.97438 * 6 5 4 33 33 H 1.08997 * 109.47257 * 29.99742 * 10 9 7 34 34 H 1.08997 * 109.47145 * 150.00052 * 10 9 7 35 35 H 0.97000 * 119.99567 * 180.02562 * 14 13 11 36 36 H 1.09002 * 109.47043 * 329.99683 * 19 9 7 37 37 H 1.09004 * 109.47109 * 210.00237 * 19 9 7 38 38 H 1.09002 * 115.54951 * 330.58548 * 20 19 9 39 39 H 1.09000 * 117.49996 * 215.00804 * 21 20 19 40 40 H 1.08999 * 117.49664 * 0.02562 * 21 20 19 41 41 H 1.09008 * 117.49673 * 359.97438 * 22 20 19 42 42 H 1.08999 * 117.49959 * 144.99502 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7659 1.1375 5 6 3.4817 -0.9524 0.9728 6 6 4.3114 -0.5677 1.9385 7 6 5.7622 -0.7492 1.7774 8 8 6.2030 -1.2515 0.7614 9 7 6.6029 -0.3588 2.7559 10 6 8.0478 -0.5401 2.5957 11 6 8.4477 -1.8889 3.1361 12 1 7.7004 -2.5452 3.5571 13 6 9.7678 -2.2847 3.0939 14 7 10.6779 -1.4852 2.5817 15 14 10.2637 -3.9561 3.7644 16 1 10.1843 -4.9677 2.6802 17 1 11.6551 -3.8902 4.2789 18 1 9.3458 -4.3393 4.8671 19 6 6.0718 0.2467 3.9796 20 6 5.7900 -0.8486 5.0099 21 6 6.5995 -0.8226 6.3080 22 6 5.1200 -0.4303 6.3203 23 1 -0.3633 0.4511 0.9233 24 1 -0.3634 0.5739 -0.8524 25 1 -0.3634 -1.0253 -0.0709 26 1 3.0826 1.3434 -0.0709 27 1 1.5897 1.9163 -0.8524 28 1 1.7043 1.8724 0.9233 29 1 1.5090 -1.7407 1.1756 30 1 1.7975 -0.2248 2.0628 31 1 3.8733 -1.3984 0.0704 32 1 3.9198 -0.1213 2.8405 33 1 8.3064 -0.4811 1.5385 34 1 8.5749 0.2414 3.1429 35 1 11.6065 -1.7638 2.5517 36 1 5.1474 0.7770 3.7509 37 1 6.8020 0.9475 4.3846 38 1 5.5280 -1.8238 4.5996 39 1 6.8702 -1.7807 6.7516 40 1 7.3326 -0.0249 6.4280 41 1 4.8804 0.6253 6.4485 42 1 4.4172 -1.1304 6.7720 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265606218.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:43 Heat of formation + Delta-G solvation = -6.103672 kcal Electronic energy + Delta-G solvation = -20420.519964 eV Core-core repulsion = 17401.270271 eV Total energy + Delta-G solvation = -3019.249693 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.80349 -38.65244 -38.27641 -36.09371 -34.67785 -34.16017 -30.13982 -28.46899 -28.31404 -27.46009 -25.25252 -23.21324 -23.09613 -21.89700 -21.24849 -19.67126 -18.63569 -18.21064 -17.33047 -16.47275 -16.29761 -16.25941 -15.87825 -15.69714 -15.62770 -14.79102 -14.54679 -14.22310 -13.97500 -13.60354 -13.31202 -13.27001 -13.01618 -12.76769 -12.72786 -12.60321 -12.58217 -12.54207 -12.42539 -12.25369 -12.20614 -11.63028 -11.21860 -10.82823 -10.64067 -10.56956 -10.40672 -9.42940 -9.31240 -8.20066 -6.32184 0.44385 1.34365 1.37521 1.46792 2.25597 2.43957 2.47402 3.03534 3.09575 3.12691 3.63842 3.93897 4.03287 4.08619 4.19984 4.26594 4.30420 4.43795 4.48417 4.57644 4.61275 4.65655 4.76821 4.80640 4.82512 4.88646 5.00959 5.05669 5.07441 5.13412 5.21497 5.33368 5.36331 5.38076 5.51123 5.61429 5.88272 6.05095 6.09598 6.10409 6.73237 6.80718 7.30781 7.48874 8.87605 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019957 B = 0.004810 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.664866 B = 5819.620953 C = 6555.463303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.566 5.566 3 C 0.023 3.977 4 C 0.086 3.914 5 C -0.055 4.055 6 C -0.205 4.205 7 C 0.524 3.476 8 O -0.606 6.606 9 N -0.594 5.594 10 C 0.262 3.738 11 C -0.524 4.524 12 H 0.052 0.948 13 C 0.007 3.993 14 N -0.931 5.931 15 Si 0.961 3.039 16 H -0.282 1.282 17 H -0.275 1.275 18 H -0.263 1.263 19 C 0.143 3.857 20 C -0.175 4.175 21 C -0.186 4.186 22 C -0.142 4.142 23 H 0.037 0.963 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.039 0.961 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.159 0.841 33 H -0.005 1.005 34 H 0.022 0.978 35 H 0.265 0.735 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.117 0.883 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.239 6.007 4.945 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.290 5.290 3 C -0.125 4.125 4 C -0.041 4.041 5 C -0.076 4.076 6 C -0.226 4.226 7 C 0.316 3.684 8 O -0.489 6.489 9 N -0.323 5.323 10 C 0.140 3.860 11 C -0.562 4.562 12 H 0.070 0.930 13 C -0.191 4.191 14 N -0.572 5.572 15 Si 0.786 3.214 16 H -0.208 1.208 17 H -0.200 1.200 18 H -0.187 1.187 19 C 0.021 3.979 20 C -0.194 4.194 21 C -0.224 4.224 22 C -0.180 4.180 23 H 0.055 0.945 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.070 0.930 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.123 0.877 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.176 0.824 33 H 0.013 0.987 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.127 0.873 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.135 0.865 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -20.649 5.575 3.990 21.758 hybrid contribution 1.044 -0.658 0.641 1.391 sum -19.605 4.917 4.630 20.736 Atomic orbital electron populations 1.22439 0.85212 1.03139 1.01437 1.61886 1.09547 1.14606 1.42992 1.22420 1.00228 0.88400 1.01501 1.21272 0.89932 1.00166 0.92735 1.23638 0.95698 0.91550 0.96687 1.22756 0.90157 1.06974 1.02714 1.19342 0.88780 0.77775 0.82546 1.90716 1.79882 1.46846 1.31499 1.48088 1.07601 1.59272 1.17326 1.18750 0.76093 0.95959 0.95155 1.21596 0.93163 1.02285 1.39189 0.92975 1.25792 0.96470 1.01141 0.95738 1.70053 1.02147 1.38331 1.46621 0.85507 0.77840 0.79437 0.78605 1.20839 1.19990 1.18709 1.21329 0.99943 0.93718 0.82927 1.22587 1.06690 0.99982 0.90155 1.22937 0.95471 1.02679 1.01275 1.23073 0.94119 1.03304 0.97469 0.94484 0.90543 0.90573 0.93028 0.90363 0.94205 0.87738 0.91789 0.88182 0.82402 0.98707 0.96016 0.92578 0.87327 0.90620 0.90205 0.90205 0.89189 0.86486 0.87553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.57 127.69 1.22 1.55 16 2 N -0.57 -10.90 5.01 -953.49 -4.78 -15.68 16 3 C 0.02 0.41 9.37 127.69 1.20 1.61 16 4 C 0.09 1.64 5.41 85.56 0.46 2.10 16 5 C -0.06 -1.54 8.20 24.52 0.20 -1.34 16 6 C -0.20 -6.26 8.82 23.43 0.21 -6.05 16 7 C 0.52 23.28 7.62 86.57 0.66 23.94 16 8 O -0.61 -33.58 15.80 -4.08 -0.06 -33.65 16 9 N -0.59 -26.26 2.46 -830.43 -2.04 -28.30 16 10 C 0.26 14.59 5.20 85.63 0.45 15.04 16 11 C -0.52 -30.82 9.39 25.60 0.24 -30.58 16 12 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 13 C 0.01 0.41 5.46 84.65 0.46 0.87 16 14 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 15 Si 0.96 46.21 29.54 68.60 2.03 48.24 16 16 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 17 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 19 C 0.14 4.55 5.45 86.38 0.47 5.02 16 20 C -0.17 -5.31 6.01 -10.79 -0.06 -5.37 16 21 C -0.19 -5.46 10.18 30.62 0.31 -5.15 16 22 C -0.14 -2.99 10.25 30.62 0.31 -2.68 16 23 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 24 H 0.08 0.89 8.12 -2.39 -0.02 0.87 16 25 H 0.08 0.89 8.12 -2.38 -0.02 0.87 16 26 H 0.05 1.18 7.29 -2.39 -0.02 1.16 16 27 H 0.08 1.24 8.12 -2.39 -0.02 1.22 16 28 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.10 1.72 8.06 -2.38 -0.02 1.70 16 30 H 0.06 0.99 7.80 -2.39 -0.02 0.97 16 31 H 0.10 3.45 7.49 -2.91 -0.02 3.43 16 32 H 0.16 3.57 6.04 -2.91 -0.02 3.55 16 33 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 34 H 0.02 1.23 7.89 -2.39 -0.02 1.21 16 35 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 36 H 0.11 2.56 6.10 -2.39 -0.01 2.54 16 37 H 0.08 2.39 7.63 -2.38 -0.02 2.37 16 38 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 39 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.09 2.67 8.03 -2.39 -0.02 2.65 16 41 H 0.12 1.88 8.14 -2.38 -0.02 1.86 16 42 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -76.56 351.42 2.53 -74.03 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.97 Total: 13.73 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 6.13 Total: -1.03 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -6.53 Total: -101.32 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -0.06 Total: -33.65 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -76.56 2.53 -74.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265606218.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.923 kcal (2) G-P(sol) polarization free energy of solvation -76.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds