Wall clock time and date at job start Mon Mar 30 2020 00:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46976 * 2 1 4 4 C 1.46503 * 119.99978 * 269.99924 * 3 2 1 5 5 C 1.50693 * 109.47112 * 269.99990 * 4 3 2 6 6 H 1.08004 * 120.00163 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00064 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99976 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00151 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47090 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46788 * 120.00098 * 9 7 5 12 12 H 1.48497 * 109.47044 * 240.00130 * 9 7 5 13 13 C 1.34777 * 120.00222 * 89.99747 * 3 2 1 14 14 O 1.21276 * 120.00408 * 179.97438 * 13 3 2 15 15 C 1.50702 * 119.99415 * 0.02562 * 13 3 2 16 16 N 1.46909 * 109.46606 * 180.02562 * 15 13 3 17 17 C 1.46839 * 110.99825 * 293.94693 * 16 15 13 18 18 C 1.50145 * 110.27883 * 287.54159 * 17 16 15 19 19 C 1.29827 * 123.28013 * 343.21205 * 18 17 16 20 20 C 1.50700 * 118.54758 * 180.11419 * 19 18 17 21 21 C 1.50297 * 122.89637 * 359.85931 * 19 18 17 22 22 C 1.47241 * 110.99841 * 171.02086 * 16 15 13 23 23 H 1.08990 * 109.47342 * 299.99882 * 1 2 3 24 24 H 1.08998 * 109.46753 * 60.00202 * 1 2 3 25 25 H 1.09001 * 109.46705 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47552 * 240.00178 * 2 1 3 27 27 H 1.09000 * 109.47263 * 119.99860 * 2 1 3 28 28 H 1.09003 * 109.46994 * 30.00302 * 4 3 2 29 29 H 1.09000 * 109.47052 * 149.99785 * 4 3 2 30 30 H 0.97000 * 119.99836 * 180.02562 * 8 7 5 31 31 H 1.08991 * 109.47401 * 59.99808 * 15 13 3 32 32 H 1.09000 * 109.47083 * 299.99207 * 15 13 3 33 33 H 1.08997 * 109.33724 * 167.29374 * 17 16 15 34 34 H 1.09004 * 109.20183 * 47.70309 * 17 16 15 35 35 H 1.08002 * 118.35654 * 162.92235 * 18 17 16 36 36 H 1.08993 * 109.47431 * 359.97438 * 20 19 18 37 37 H 1.09009 * 109.47115 * 119.99816 * 20 19 18 38 38 H 1.08996 * 109.46811 * 239.99130 * 20 19 18 39 39 H 1.08995 * 109.56219 * 223.76143 * 21 19 18 40 40 H 1.09003 * 109.24817 * 103.94561 * 21 19 18 41 41 H 1.09002 * 109.63743 * 174.27640 * 22 16 15 42 42 H 1.09004 * 109.63640 * 294.88353 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0957 7 6 4.1490 2.3897 -2.8780 8 7 3.3490 3.1258 -3.6181 9 14 5.9135 2.0968 -3.4169 10 1 6.6012 1.2417 -2.4163 11 1 5.9214 1.4172 -4.7372 12 1 6.6203 3.3983 -3.5257 13 6 2.2429 2.0167 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9922 1.3060 2.4722 16 7 2.3097 2.2064 3.5888 17 6 3.7456 2.5110 3.6272 18 6 4.5193 1.3131 4.0971 19 6 3.9724 0.3064 4.7077 20 6 4.8514 -0.8404 5.1356 21 6 2.5021 0.2368 5.0115 22 6 1.8781 1.6278 4.8722 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.5816 1.6878 -2.0284 29 1 2.0954 3.1411 -1.1384 30 1 3.6749 3.5157 -4.4444 31 1 2.6227 0.4188 2.5298 32 1 0.9443 1.0115 2.5302 33 1 3.9199 3.3433 4.3091 34 1 4.0803 2.7874 2.6274 35 1 5.5833 1.2856 3.9140 36 1 5.8823 -0.6355 4.8469 37 1 4.7934 -0.9586 6.2177 38 1 4.5142 -1.7569 4.6515 39 1 2.3564 -0.1257 6.0290 40 1 2.0225 -0.4474 4.3115 41 1 2.2134 2.2635 5.6918 42 1 0.7913 1.5453 4.8898 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270401706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:45 Heat of formation + Delta-G solvation = -15.261864 kcal Electronic energy + Delta-G solvation = -21254.768076 eV Core-core repulsion = 18235.121254 eV Total energy + Delta-G solvation = -3019.646822 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.05152 -38.29547 -35.23953 -33.96673 -32.75808 -30.83935 -30.06558 -29.19801 -27.25367 -25.95095 -23.54145 -23.02552 -22.79563 -21.47266 -18.56161 -17.22182 -16.73973 -16.34087 -15.63024 -15.31398 -15.04520 -14.60085 -14.30396 -14.03718 -13.87113 -13.39956 -13.24943 -13.10948 -12.64759 -12.57079 -12.14725 -12.00891 -11.88497 -11.82111 -11.55407 -11.46326 -11.15923 -11.01201 -10.86100 -10.70590 -10.63659 -10.49750 -10.08980 -9.57778 -8.85392 -8.67132 -8.41177 -8.05432 -7.58367 -6.01637 -4.06046 2.20043 3.30584 3.37969 3.41376 3.53167 3.76324 4.29853 4.47454 4.69811 4.86762 5.03043 5.11120 5.20752 5.32403 5.33340 5.43195 5.48336 5.48722 5.53234 5.64032 5.65852 5.69313 5.78576 5.83898 5.87676 5.90998 5.94340 6.06473 6.24396 6.27263 6.51162 6.56843 6.91549 7.06155 7.22394 7.23806 7.50839 7.62131 7.95768 8.27620 8.50810 8.94780 9.20301 9.59178 11.06381 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019330 B = 0.005728 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.211276 B = 4887.062566 C = 5463.625685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.247 3.753 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.508 3.492 14 O -0.526 6.526 15 C 0.033 3.967 16 N -0.509 5.509 17 C 0.072 3.928 18 C -0.178 4.178 19 C -0.143 4.143 20 C -0.115 4.115 21 C -0.119 4.119 22 C 0.052 3.948 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.262 0.738 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.186 -9.106 16.023 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.333 5.333 4 C 0.128 3.872 5 C -0.562 4.562 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.293 3.707 14 O -0.402 6.402 15 C -0.098 4.098 16 N -0.230 5.230 17 C -0.055 4.055 18 C -0.198 4.198 19 C -0.143 4.143 20 C -0.172 4.172 21 C -0.158 4.158 22 C -0.076 4.076 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.244 -7.919 15.743 17.919 hybrid contribution 1.481 -1.133 -0.308 1.890 sum -1.763 -9.052 15.435 17.980 Atomic orbital electron populations 1.22223 0.96837 1.01299 1.02381 1.21388 0.93482 0.84413 1.02443 1.48251 1.64170 1.13122 1.07710 1.19245 0.96127 0.93686 0.78158 1.21472 0.96967 1.31669 1.06112 0.92559 1.24931 0.97745 0.94987 0.96446 1.69945 1.35547 1.33577 1.14311 0.86473 0.84808 0.78031 0.78282 1.19887 1.21000 1.20873 1.20148 0.78719 0.87027 0.84761 1.90630 1.44991 1.17774 1.86838 1.22109 1.02016 0.94893 0.90824 1.62393 1.16513 1.42543 1.01597 1.21311 0.85461 0.94722 1.04039 1.22988 1.00768 0.96947 0.99101 1.20884 0.95588 0.96866 1.00963 1.20872 0.98534 0.96875 1.00888 1.21028 0.93072 0.99594 1.02072 1.22312 1.00002 0.93123 0.92159 0.93052 0.91992 0.92278 0.90053 0.92074 0.95130 0.93873 0.92820 0.92033 0.88885 0.89719 0.87323 0.87567 0.92224 0.92074 0.92015 0.90781 0.90918 0.90362 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.24 37.16 0.38 -1.91 16 2 C 0.11 1.75 5.93 -4.04 -0.02 1.72 16 3 N -0.60 -12.83 2.46 -175.05 -0.43 -13.26 16 4 C 0.25 6.52 5.16 -5.20 -0.03 6.50 16 5 C -0.52 -14.94 9.39 -34.44 -0.32 -15.26 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 9 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 10 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.51 10.77 7.28 -10.98 -0.08 10.69 16 14 O -0.53 -13.37 13.99 5.56 0.08 -13.29 16 15 C 0.03 0.52 3.10 -4.97 -0.02 0.50 16 16 N -0.51 -7.86 4.77 -237.55 -1.13 -8.99 16 17 C 0.07 1.14 5.57 -5.28 -0.03 1.11 16 18 C -0.18 -2.45 8.99 -35.96 -0.32 -2.77 16 19 C -0.14 -1.70 5.23 -100.93 -0.53 -2.23 16 20 C -0.11 -1.14 10.02 36.01 0.36 -0.78 16 21 C -0.12 -1.24 5.27 -28.03 -0.15 -1.39 16 22 C 0.05 0.60 6.03 -3.59 -0.02 0.58 16 23 H 0.05 0.66 7.22 -51.93 -0.38 0.29 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 27 H 0.06 0.85 6.44 -51.93 -0.33 0.51 16 28 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 29 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.06 0.94 5.26 -51.93 -0.27 0.67 16 32 H 0.09 1.28 7.14 -51.93 -0.37 0.91 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.11 2.13 5.76 -51.93 -0.30 1.83 16 35 H 0.11 1.41 7.63 -52.49 -0.40 1.01 16 36 H 0.06 0.59 7.62 -51.93 -0.40 0.19 16 37 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.74 7.13 -51.93 -0.37 0.37 16 41 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 331.99 15.07 5.00 5.00 Total: -1.00 -32.63 331.99 -8.61 -41.24 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.97 Total: -0.06 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -0.88 Total: -1.59 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.83 Total: -48.32 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.63 -8.61 -41.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270401706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.981 kcal (2) G-P(sol) polarization free energy of solvation -32.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds