Wall clock time and date at job start Mon Mar 30 2020 00:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46976 * 2 1 4 4 C 1.46503 * 119.99978 * 269.99924 * 3 2 1 5 5 C 1.50693 * 109.47112 * 269.99990 * 4 3 2 6 6 H 1.08004 * 120.00163 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00064 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99976 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00151 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47090 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46788 * 120.00098 * 9 7 5 12 12 H 1.48497 * 109.47044 * 240.00130 * 9 7 5 13 13 C 1.34777 * 120.00222 * 89.99747 * 3 2 1 14 14 O 1.21276 * 120.00408 * 179.97438 * 13 3 2 15 15 C 1.50702 * 119.99415 * 0.02562 * 13 3 2 16 16 N 1.46909 * 109.46606 * 180.02562 * 15 13 3 17 17 C 1.46839 * 110.99825 * 293.94693 * 16 15 13 18 18 C 1.50145 * 110.27883 * 287.54159 * 17 16 15 19 19 C 1.29827 * 123.28013 * 343.21205 * 18 17 16 20 20 C 1.50700 * 118.54758 * 180.11419 * 19 18 17 21 21 C 1.50297 * 122.89637 * 359.85931 * 19 18 17 22 22 C 1.47241 * 110.99841 * 171.02086 * 16 15 13 23 23 H 1.08990 * 109.47342 * 299.99882 * 1 2 3 24 24 H 1.08998 * 109.46753 * 60.00202 * 1 2 3 25 25 H 1.09001 * 109.46705 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47552 * 240.00178 * 2 1 3 27 27 H 1.09000 * 109.47263 * 119.99860 * 2 1 3 28 28 H 1.09003 * 109.46994 * 30.00302 * 4 3 2 29 29 H 1.09000 * 109.47052 * 149.99785 * 4 3 2 30 30 H 0.97000 * 119.99836 * 180.02562 * 8 7 5 31 31 H 1.08991 * 109.47401 * 59.99808 * 15 13 3 32 32 H 1.09000 * 109.47083 * 299.99207 * 15 13 3 33 33 H 1.08997 * 109.33724 * 167.29374 * 17 16 15 34 34 H 1.09004 * 109.20183 * 47.70309 * 17 16 15 35 35 H 1.08002 * 118.35654 * 162.92235 * 18 17 16 36 36 H 1.08993 * 109.47431 * 359.97438 * 20 19 18 37 37 H 1.09009 * 109.47115 * 119.99816 * 20 19 18 38 38 H 1.08996 * 109.46811 * 239.99130 * 20 19 18 39 39 H 1.08995 * 109.56219 * 223.76143 * 21 19 18 40 40 H 1.09003 * 109.24817 * 103.94561 * 21 19 18 41 41 H 1.09002 * 109.63743 * 174.27640 * 22 16 15 42 42 H 1.09004 * 109.63640 * 294.88353 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0957 7 6 4.1490 2.3897 -2.8780 8 7 3.3490 3.1258 -3.6181 9 14 5.9135 2.0968 -3.4169 10 1 6.6012 1.2417 -2.4163 11 1 5.9214 1.4172 -4.7372 12 1 6.6203 3.3983 -3.5257 13 6 2.2429 2.0167 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9922 1.3060 2.4722 16 7 2.3097 2.2064 3.5888 17 6 3.7456 2.5110 3.6272 18 6 4.5193 1.3131 4.0971 19 6 3.9724 0.3064 4.7077 20 6 4.8514 -0.8404 5.1356 21 6 2.5021 0.2368 5.0115 22 6 1.8781 1.6278 4.8722 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.5816 1.6878 -2.0284 29 1 2.0954 3.1411 -1.1384 30 1 3.6749 3.5157 -4.4444 31 1 2.6227 0.4188 2.5298 32 1 0.9443 1.0115 2.5302 33 1 3.9199 3.3433 4.3091 34 1 4.0803 2.7874 2.6274 35 1 5.5833 1.2856 3.9140 36 1 5.8823 -0.6355 4.8469 37 1 4.7934 -0.9586 6.2177 38 1 4.5142 -1.7569 4.6515 39 1 2.3564 -0.1257 6.0290 40 1 2.0225 -0.4474 4.3115 41 1 2.2134 2.2635 5.6918 42 1 0.7913 1.5453 4.8898 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270401706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:45 Heat of formation + Delta-G solvation = -37.137558 kcal Electronic energy + Delta-G solvation = -21255.716677 eV Core-core repulsion = 18235.121254 eV Total energy + Delta-G solvation = -3020.595423 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.34869 -39.72543 -36.91552 -35.11183 -34.80791 -31.82487 -31.63766 -30.51451 -28.80802 -27.29797 -24.94457 -24.49122 -24.13032 -22.69689 -20.06479 -18.66008 -18.38046 -18.09373 -17.07415 -16.75000 -16.37206 -16.16233 -15.53008 -15.33329 -15.10029 -14.67149 -14.51637 -14.38057 -14.15896 -13.61189 -13.52085 -13.46627 -13.23294 -13.09127 -12.93958 -12.71984 -12.67229 -12.51620 -12.42847 -12.18675 -12.11708 -11.80632 -11.67134 -11.60254 -10.65601 -10.48614 -9.70438 -9.39407 -9.19762 -8.22756 -6.37613 1.22348 1.33935 1.36572 1.48125 1.89206 2.25574 2.41123 3.05869 3.07600 3.71237 3.84619 3.91851 4.08152 4.17321 4.23877 4.30162 4.36911 4.45884 4.59374 4.63861 4.66773 4.75838 4.79575 4.83797 4.94468 4.95656 4.99229 5.03294 5.04883 5.06244 5.16542 5.22975 5.40153 5.58619 5.63164 5.85552 5.92949 6.07242 6.09252 6.14176 6.70929 6.85278 7.28855 7.56061 8.84343 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019330 B = 0.005728 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.211276 B = 4887.062566 C = 5463.625685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.264 3.736 5 C -0.539 4.539 6 H 0.050 0.950 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.268 1.268 11 H -0.267 1.267 12 H -0.282 1.282 13 C 0.496 3.504 14 O -0.581 6.581 15 C 0.053 3.947 16 N -0.531 5.531 17 C 0.080 3.920 18 C -0.210 4.210 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.118 4.118 22 C 0.052 3.948 23 H 0.061 0.939 24 H 0.038 0.962 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.021 0.979 29 H -0.006 1.006 30 H 0.267 0.733 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.526 -12.100 18.052 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.338 5.338 4 C 0.142 3.858 5 C -0.578 4.578 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.791 3.209 10 H -0.193 1.193 11 H -0.192 1.192 12 H -0.207 1.207 13 C 0.284 3.716 14 O -0.461 6.461 15 C -0.078 4.078 16 N -0.253 5.253 17 C -0.048 4.048 18 C -0.230 4.230 19 C -0.123 4.123 20 C -0.173 4.173 21 C -0.156 4.156 22 C -0.075 4.075 23 H 0.080 0.920 24 H 0.057 0.943 25 H 0.115 0.885 26 H 0.089 0.911 27 H 0.113 0.887 28 H 0.039 0.961 29 H 0.013 0.987 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.142 0.858 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.118 0.882 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.121 0.879 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.608 -10.964 17.796 21.211 hybrid contribution 1.540 -0.195 -0.891 1.790 sum -2.068 -11.159 16.905 20.361 Atomic orbital electron populations 1.22151 0.94359 1.03555 1.01754 1.21721 0.95482 0.81424 1.03579 1.48291 1.64311 1.15036 1.06179 1.18664 0.95188 0.91449 0.80475 1.21710 0.97863 1.31831 1.06390 0.93187 1.25851 1.02332 0.94494 0.96449 1.70063 1.37678 1.34283 1.14800 0.85388 0.79098 0.78009 0.78432 1.19272 1.19236 1.20740 1.21226 0.77314 0.86684 0.86363 1.90603 1.47220 1.20473 1.87770 1.21965 1.03888 0.94172 0.87742 1.62344 1.16102 1.43602 1.03274 1.21001 0.86458 0.96028 1.01303 1.22786 1.00466 0.97508 1.02232 1.21275 0.96929 0.96069 0.98062 1.20929 0.97842 0.96240 1.02258 1.21107 0.91491 0.98919 1.04129 1.22452 1.01283 0.93831 0.89968 0.92020 0.94317 0.88470 0.91108 0.88711 0.96088 0.98744 0.92418 0.90740 0.85782 0.89820 0.92211 0.88187 0.92765 0.90049 0.90818 0.87889 0.89669 0.89923 0.88240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 10.24 71.98 0.74 -3.23 16 2 C 0.10 3.12 5.93 86.38 0.51 3.64 16 3 N -0.61 -26.53 2.46 -826.14 -2.03 -28.56 16 4 C 0.26 14.70 5.16 85.63 0.44 15.14 16 5 C -0.54 -31.95 9.39 25.60 0.24 -31.71 16 6 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 7 C 0.01 0.45 5.46 84.65 0.46 0.91 16 8 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 9 Si 0.97 45.91 29.54 68.60 2.03 47.93 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 13 C 0.50 21.56 7.28 87.66 0.64 22.20 16 14 O -0.58 -31.42 13.99 -3.02 -0.04 -31.46 16 15 C 0.05 1.59 3.10 85.56 0.27 1.86 16 16 N -0.53 -15.89 4.77 -905.46 -4.32 -20.21 16 17 C 0.08 2.61 5.57 85.39 0.48 3.09 16 18 C -0.21 -5.68 8.99 26.68 0.24 -5.44 16 19 C -0.12 -2.57 5.23 -15.41 -0.08 -2.66 16 20 C -0.12 -1.89 10.02 71.24 0.71 -1.18 16 21 C -0.12 -1.93 5.27 29.75 0.16 -1.77 16 22 C 0.05 1.03 6.03 86.27 0.52 1.55 16 23 H 0.06 1.41 7.22 -2.39 -0.02 1.39 16 24 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 27 H 0.09 2.32 6.44 -2.39 -0.02 2.30 16 28 H 0.02 1.19 8.07 -2.39 -0.02 1.17 16 29 H -0.01 -0.36 7.42 -2.39 -0.02 -0.38 16 30 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 31 H 0.07 2.06 5.26 -2.39 -0.01 2.05 16 32 H 0.12 2.95 7.14 -2.39 -0.02 2.93 16 33 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.06 2.53 5.76 -2.39 -0.01 2.52 16 35 H 0.10 2.73 7.63 -2.91 -0.02 2.71 16 36 H 0.05 0.95 7.62 -2.39 -0.02 0.93 16 37 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.09 1.26 7.13 -2.39 -0.02 1.25 16 41 H 0.08 1.58 8.08 -2.39 -0.02 1.56 16 42 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -76.18 331.99 2.23 -73.95 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.98 Total: 13.00 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 5.32 Total: 2.40 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -6.06 Total: -105.83 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.04 Total: -31.46 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -76.18 2.23 -73.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270401706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.813 kcal (2) G-P(sol) polarization free energy of solvation -76.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds