Wall clock time and date at job start Mon Mar 30 2020 01:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99871 * 2 1 4 4 N 1.46501 * 109.47095 * 125.00202 * 3 2 1 5 5 C 1.46767 * 124.34784 * 89.99792 * 4 3 2 6 6 C 1.54477 * 105.55064 * 197.07831 * 5 4 3 7 7 C 1.54633 * 101.76282 * 334.54250 * 6 5 4 8 8 H 1.09007 * 110.48157 * 143.47679 * 7 6 5 9 9 N 1.46895 * 110.48709 * 265.98154 * 7 6 5 10 10 C 1.46902 * 111.00481 * 297.50454 * 9 7 6 11 11 C 1.46905 * 111.00310 * 173.54151 * 9 7 6 12 12 C 1.52998 * 109.47221 * 190.00312 * 11 9 7 13 13 C 1.53000 * 109.46816 * 179.97438 * 12 11 9 14 14 C 1.50701 * 109.47073 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99851 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99913 * 180.02562 * 14 13 12 17 17 N 1.31521 * 120.00021 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 120.00089 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46953 * 90.00451 * 18 16 14 20 20 H 1.48500 * 109.46909 * 210.00244 * 18 16 14 21 21 H 1.48493 * 109.47156 * 330.00220 * 18 16 14 22 22 C 1.34621 * 124.46779 * 270.02816 * 4 3 2 23 23 O 1.21277 * 124.91037 * 359.54971 * 22 4 3 24 24 H 1.07994 * 120.00179 * 359.97438 * 1 2 3 25 25 H 1.08007 * 119.99641 * 180.02562 * 1 2 3 26 26 H 1.07997 * 119.99729 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47264 * 5.00545 * 3 2 1 28 28 H 1.08998 * 109.47242 * 245.00454 * 3 2 1 29 29 H 1.09004 * 110.24232 * 78.03896 * 5 4 3 30 30 H 1.08996 * 110.24437 * 316.12673 * 5 4 3 31 31 H 1.09000 * 110.96897 * 92.66008 * 6 5 4 32 32 H 1.08995 * 110.97198 * 216.38685 * 6 5 4 33 33 H 1.08989 * 109.47097 * 65.58472 * 10 9 7 34 34 H 1.08997 * 109.47006 * 185.59206 * 10 9 7 35 35 H 1.09000 * 109.46345 * 305.58261 * 10 9 7 36 36 H 1.08998 * 109.46798 * 310.00936 * 11 9 7 37 37 H 1.09004 * 109.46542 * 70.00654 * 11 9 7 38 38 H 1.08994 * 109.47065 * 300.00284 * 12 11 9 39 39 H 1.08997 * 109.46716 * 60.00784 * 12 11 9 40 40 H 1.08997 * 109.47523 * 300.00535 * 13 12 11 41 41 H 1.09004 * 109.46743 * 60.00467 * 13 12 11 42 42 H 0.97000 * 119.99786 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3792 0.8507 1.0759 6 6 4.8130 0.6665 2.5470 7 6 3.8829 1.6631 3.2770 8 1 3.5756 1.2610 4.2425 9 7 4.5529 2.9588 3.4509 10 6 5.7493 2.8241 4.2926 11 6 3.6298 3.9589 4.0039 12 6 4.2786 5.3430 3.9386 13 6 3.3169 6.3845 4.5140 14 6 3.9556 7.7480 4.4492 15 1 4.9480 7.8603 4.0382 16 6 3.2730 8.8518 4.9144 17 7 3.8306 10.0417 4.8583 18 14 1.5562 8.6575 5.6246 19 1 1.6501 8.4090 7.0856 20 1 0.7771 9.8983 5.3826 21 1 0.8766 7.5108 4.9701 22 6 2.6901 1.7999 2.3566 23 8 1.6159 2.2635 2.6758 24 1 -0.5400 0.9352 0.0004 25 1 -0.5400 -0.9354 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0897 28 1 2.6212 1.4027 -0.9314 29 1 5.0149 1.5874 0.5847 30 1 4.4271 -0.1009 0.5465 31 1 4.6308 -0.3544 2.8825 32 1 5.8598 0.9384 2.6821 33 1 6.4879 2.2093 3.7785 34 1 6.1696 3.8108 4.4870 35 1 5.4777 2.3525 5.2370 36 1 2.7073 3.9621 3.4233 37 1 3.4053 3.7114 5.0415 38 1 5.2010 5.3396 4.5192 39 1 4.5031 5.5903 2.9011 40 1 2.3946 6.3877 3.9331 41 1 3.0919 6.1373 5.5515 42 1 3.3502 10.8183 5.1853 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281386098.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:20 Heat of formation + Delta-G solvation = -6.551738 kcal Electronic energy + Delta-G solvation = -20555.097115 eV Core-core repulsion = 17535.827993 eV Total energy + Delta-G solvation = -3019.269122 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.73076 -37.26466 -36.54006 -34.79183 -33.46526 -31.72754 -30.51853 -27.84862 -27.29898 -26.19674 -24.75265 -22.01947 -21.27487 -20.20366 -19.84774 -19.39257 -17.04311 -16.79507 -16.56654 -16.00701 -15.16903 -14.69177 -14.48503 -14.17759 -14.03546 -13.99140 -13.52738 -13.27818 -13.02280 -12.93712 -12.52752 -12.07826 -11.89335 -11.75660 -11.60784 -11.54296 -11.36871 -11.23796 -10.87711 -10.64234 -9.95857 -9.86620 -9.63356 -9.52900 -9.44982 -9.08986 -8.80851 -8.46290 -8.25003 -5.97504 -3.94709 1.88637 2.49487 3.03799 3.37310 3.44404 3.51830 4.05643 4.17810 4.34669 4.53036 4.62469 4.76034 4.84593 5.03033 5.07872 5.24496 5.32689 5.36990 5.42999 5.48437 5.52144 5.58618 5.62428 5.72633 5.79064 5.95402 6.06145 6.28865 6.30474 6.37278 6.48588 6.58790 6.65691 6.94427 7.01880 7.17935 7.21479 7.43877 7.55242 7.87846 8.16064 8.61952 9.07757 9.65912 11.16009 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021478 B = 0.004403 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.322546 B = 6357.360349 C = 7184.740191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.180 4.180 3 C 0.153 3.847 4 N -0.613 5.613 5 C 0.111 3.889 6 C -0.129 4.129 7 C 0.049 3.951 8 H 0.072 0.928 9 N -0.522 5.522 10 C 0.020 3.980 11 C 0.042 3.958 12 C -0.094 4.094 13 C -0.013 4.013 14 C -0.516 4.516 15 H 0.071 0.929 16 C 0.065 3.935 17 N -0.906 5.906 18 Si 0.878 3.122 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.264 1.264 22 C 0.532 3.468 23 O -0.521 6.521 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.025 0.975 36 H 0.084 0.916 37 H 0.031 0.969 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.016 0.984 41 H 0.009 0.991 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.041 -24.602 -8.711 26.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.199 4.199 3 C 0.032 3.968 4 N -0.347 5.347 5 C -0.012 4.012 6 C -0.167 4.167 7 C -0.063 4.063 8 H 0.090 0.910 9 N -0.248 5.248 10 C -0.128 4.128 11 C -0.085 4.085 12 C -0.131 4.131 13 C -0.051 4.051 14 C -0.554 4.554 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.545 5.545 18 Si 0.705 3.295 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.189 1.189 22 C 0.319 3.681 23 O -0.395 6.395 24 H 0.118 0.882 25 H 0.117 0.883 26 H 0.126 0.874 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.044 0.956 36 H 0.102 0.898 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.034 0.966 41 H 0.027 0.973 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.532 -23.996 -9.028 25.644 hybrid contribution -1.125 -0.334 1.195 1.675 sum -0.593 -24.330 -7.833 25.567 Atomic orbital electron populations 1.23928 0.95916 1.02191 0.98673 1.23273 0.96344 0.98737 1.01532 1.20448 0.91997 0.95907 0.88491 1.48211 1.12839 1.62804 1.10895 1.22014 0.82042 0.99607 0.97576 1.22737 1.01183 0.98618 0.94189 1.22360 0.93575 0.92406 0.97996 0.91004 1.62075 1.07547 1.04730 1.50496 1.22518 0.92525 1.03196 0.94527 1.22551 0.96022 0.92247 0.97671 1.21458 0.98907 0.91400 1.01381 1.19548 0.95464 0.94754 0.95378 1.21145 1.03608 0.89955 1.40723 0.91042 1.25023 0.97850 0.95194 0.95448 1.69924 1.38102 0.98711 1.47809 0.86795 0.85191 0.77718 0.79755 1.20348 1.21411 1.18877 1.20684 0.88400 0.76166 0.82898 1.90725 1.26339 1.44397 1.78022 0.88154 0.88346 0.87361 0.89478 0.89457 0.90481 0.90826 0.90024 0.88275 0.91471 0.89833 0.95622 0.89760 0.95076 0.92847 0.92159 0.96569 0.97274 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 14.32 29.01 0.42 -1.10 16 2 C -0.18 -1.62 9.85 -36.03 -0.35 -1.97 16 3 C 0.15 1.54 6.38 -5.19 -0.03 1.51 16 4 N -0.61 -7.08 2.92 -173.73 -0.51 -7.58 16 5 C 0.11 0.91 7.34 -3.12 -0.02 0.89 16 6 C -0.13 -1.06 6.67 -25.10 -0.17 -1.23 16 7 C 0.05 0.62 2.64 -67.72 -0.18 0.44 16 8 H 0.07 0.92 8.14 -51.92 -0.42 0.49 16 9 N -0.52 -7.65 4.64 -234.90 -1.09 -8.74 16 10 C 0.02 0.24 9.16 60.07 0.55 0.79 16 11 C 0.04 0.77 4.77 -3.82 -0.02 0.75 16 12 C -0.09 -1.98 5.10 -26.73 -0.14 -2.12 16 13 C -0.01 -0.34 4.04 -27.88 -0.11 -0.46 16 14 C -0.52 -15.36 9.66 -34.44 -0.33 -15.69 16 15 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.91 -28.79 13.96 55.43 0.77 -28.02 16 18 Si 0.88 22.81 27.47 -169.99 -4.67 18.14 16 19 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.26 -6.74 6.54 56.52 0.37 -6.37 16 22 C 0.53 7.99 6.87 -10.77 -0.07 7.92 16 23 O -0.52 -9.95 15.92 5.56 0.09 -9.87 16 24 H 0.10 0.94 7.84 -52.49 -0.41 0.53 16 25 H 0.10 0.73 8.06 -52.48 -0.42 0.30 16 26 H 0.11 0.83 8.06 -52.49 -0.42 0.41 16 27 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.71 6.04 -51.93 -0.31 0.40 16 33 H 0.07 0.63 6.33 -51.94 -0.33 0.30 16 34 H 0.08 1.13 6.10 -51.93 -0.32 0.81 16 35 H 0.03 0.29 8.13 -51.93 -0.42 -0.13 16 36 H 0.08 1.73 5.68 -51.93 -0.30 1.44 16 37 H 0.03 0.57 8.12 -51.93 -0.42 0.15 16 38 H 0.05 1.09 6.37 -51.93 -0.33 0.76 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 41 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 42 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 336.15 15.07 5.07 5.07 Total: -1.00 -34.74 336.15 -7.87 -42.62 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -6.97 Total: -3.23 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -0.56 Total: -8.39 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: -0.82 Total: -44.35 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.67 Total: 18.14 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.74 -7.87 -42.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281386098.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.064 kcal (2) G-P(sol) polarization free energy of solvation -34.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds